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https://www.readbyqxmd.com/read/28212103/simulation-of-healing-threshold-in-strain-induced-inflammation-through-a-discrete-informatics-model
#1
Israr Ibrahim, Sanjay Venkata Oruganti, Ramana Pidaparti
Respiratory diseases such as asthma and acute respiratory distress syndrome as well as acute lung injury involve inflammation at the cellular level. The inflammation process is very complex and is characterized by the emergence of cytokines along with other changes in cellular processes. Due to the complexity of the various constituents that makes up the inflammation dynamics, it is necessary to develop models that can complement experiments to fully understand inflammatory diseases. In this study, we developed a discrete informatics model based on cellular automata (CA) approach to investigate the influence of elastic field (stretch/strain) on the dynamics of inflammation and account for probabilistic adaptation based on statistical interpretation of existing experimental data...
February 15, 2017: IEEE Journal of Biomedical and Health Informatics
https://www.readbyqxmd.com/read/28208435/mechanisms-of-jamming-in-the-nagel-schreckenberg-model-for-traffic-flow
#2
Henrik M Bette, Lars Habel, Thorsten Emig, Michael Schreckenberg
We study the Nagel-Schreckenberg cellular automata model for traffic flow by both simulations and analytical techniques. To better understand the nature of the jamming transition, we analyze the fraction of stopped cars P(v=0) as a function of the mean car density. We present a simple argument that yields an estimate for the free density where jamming occurs, and show satisfying agreement with simulation results. We demonstrate that the fraction of jammed cars P(v∈{0,1}) can be decomposed into the three factors (jamming rate, jam lifetime, and jam size) for which we derive, from random walk arguments, exponents that control their scaling close to the critical density...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28192427/comparing-individual-based-approaches-to-modelling-the-self-organization-of-multicellular-tissues
#3
James M Osborne, Alexander G Fletcher, Joe M Pitt-Francis, Philip K Maini, David J Gavaghan
The coordinated behaviour of populations of cells plays a central role in tissue growth and renewal. Cells react to their microenvironment by modulating processes such as movement, growth and proliferation, and signalling. Alongside experimental studies, computational models offer a useful means by which to investigate these processes. To this end a variety of cell-based modelling approaches have been developed, ranging from lattice-based cellular automata to lattice-free models that treat cells as point-like particles or extended shapes...
February 13, 2017: PLoS Computational Biology
https://www.readbyqxmd.com/read/28155706/a-methodological-approach-for-using-high-level-petri-nets-to-model-the-immune-system-response
#4
Marzio Pennisi, Salvatore Cavalieri, Santo Motta, Francesco Pappalardo
BACKGROUND: Mathematical and computational models showed to be a very important support tool for the comprehension of the immune system response against pathogens. Models and simulations allowed to study the immune system behavior, to test biological hypotheses about diseases and infection dynamics, and to improve and optimize novel and existing drugs and vaccines. Continuous models, mainly based on differential equations, usually allow to qualitatively study the system but lack in description; conversely discrete models, such as agent based models and cellular automata, permit to describe in detail entities properties at the cost of losing most qualitative analyses...
December 22, 2016: BMC Bioinformatics
https://www.readbyqxmd.com/read/28144874/tailoring-a-non-path-dependent-model-for-environmental-risk-management-and-polycentric-urban-land-use-planning
#5
Yousef Sakieh, Abdolrassoul Salmanmahiny, Seyed Hamed Mirkarimi
This study attempts to develop a non-path-dependent model for environmental risk management and polycentric urban land-use planning in Gorgan Township area, Iran. Applying three suitability layers of environmental risk (soil erosion, flood risk, fire risk, and land susceptibility), urbanization potential, and integrated surface (environmental risk plus urbanization potential layers), a non-path-dependent Cellular Automata-Markov Chain (CA-MC) model was configured to execute three scenarios of polycentric urban growth allocation...
February 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28137248/multidisciplinary-insight-into-clonal-expansion-of-htlv-1-infected-cells-in-adult-t-cell-leukemia-via-modeling-by-deterministic-finite-automata-coupled-with-high-throughput-sequencing
#6
Amir Farmanbar, Sanaz Firouzi, Sung-Joon Park, Kenta Nakai, Kaoru Uchimaru, Toshiki Watanabe
BACKGROUND: Clonal expansion of leukemic cells leads to onset of adult T-cell leukemia (ATL), an aggressive lymphoid malignancy with a very poor prognosis. Infection with human T-cell leukemia virus type-1 (HTLV-1) is the direct cause of ATL onset, and integration of HTLV-1 into the human genome is essential for clonal expansion of leukemic cells. Therefore, monitoring clonal expansion of HTLV-1-infected cells via isolation of integration sites assists in analyzing infected individuals from early infection to the final stage of ATL development...
January 31, 2017: BMC Medical Genomics
https://www.readbyqxmd.com/read/28127665/influence-of-nutrient-availability-and-quorum-sensing-on-the-formation-of-metabolically-inactive-microcolonies-within-structurally-heterogeneous-bacterial-biofilms-an-individual-based-3d-cellular-automata-model
#7
Lakshmi Machineni, Anil Rajapantul, Vandana Nandamuri, Parag D Pawar
The resistance of bacterial biofilms to antibiotic treatment has been attributed to the emergence of structurally heterogeneous microenvironments containing metabolically inactive cell populations. In this study, we use a three-dimensional individual-based cellular automata model to investigate the influence of nutrient availability and quorum sensing on microbial heterogeneity in growing biofilms. Mature biofilms exhibited at least three structurally distinct strata: a high-volume, homogeneous region sandwiched between two compact sections of high heterogeneity...
January 26, 2017: Bulletin of Mathematical Biology
https://www.readbyqxmd.com/read/28119551/lamb-s-problem-on-random-mass-density-fields-with-fractal-and-hurst-effects
#8
V V Nishawala, M Ostoja-Starzewski, M J Leamy, E Porcu
This paper reports on a generalization of Lamb's problem to a linear elastic, infinite half-space with random fields (RFs) of mass density, subject to a normal line load. Both, uncorrelated and correlated (with fractal and Hurst characteristics) RFs without any weak noise restrictions, are proposed. Cellular automata (CA) is used to simulate the wave propagation. CA is a local computational method which, for rectangular discretization of spatial domain, is equivalent to applying the finite difference method to the governing equations of classical elasticity...
December 2016: Proceedings. Mathematical, Physical, and Engineering Sciences
https://www.readbyqxmd.com/read/28113996/novel-discretized-weak-estimators-based-on-the-principles-of-the-stochastic-search-on-the-line-problem
#9
Anis Yazidi, Basantkumar John Oommen
Generally speaking, research in the field of estimation involves designing strong estimators, i.e., those which converge with probability 1, as the number of samples increases indefinitely. But when the underlying distribution is nonstationary, one should rather seek for weak estimators, i.e., those which can unlearn when the distribution has changed. One such estimator, the so-called stochastic learning weak estimator (SLWE) was based on the principles of continuous stochastic learning automata (LA). A problem that has been unsolved has been that of designing such weak estimators in the context of systems with finite memory, which is what we investigate here...
September 22, 2016: IEEE Transactions on Cybernetics
https://www.readbyqxmd.com/read/28113570/on-solving-the-problem-of-identifying-unreliable-sensors-without-a-knowledge-of-the-ground-truth-the-case-of-stochastic-environments
#10
Anis Yazidi, B John Oommen, Morten Goodwin
The purpose of this paper is to propose a solution to an extremely pertinent problem, namely, that of identifying unreliable sensors (in a domain of reliable and unreliable ones) without any knowledge of the ground truth. This fascinating paradox can be formulated in simple terms as trying to identify stochastic liars without any additional information about the truth. Though apparently impossible, we will show that it is feasible to solve the problem, a claim that is counter-intuitive in and of itself. One aspect of our contribution is to show how redundancy can be introduced, and how it can be effectively utilized in resolving this paradox...
April 28, 2016: IEEE Transactions on Cybernetics
https://www.readbyqxmd.com/read/28113244/stem-cell-plasticity-and-niche-dynamics-in-cancer-progression
#11
Noemi Picco, Robert A Gatenby, Alexander R A Anderson
OBJECTIVE: Cancer stem cells (CSCs) have been hypothesized to initiate and drive tumor growth and recurrence due to their self-renewal ability. If correct, this hypothesis implies that successful therapy must focus primarily on eradication of this CSC fraction. However, recent evidence suggests stemness is niche dependent and may represent one of many phenotypic states that can be accessed by many cancer genotypes when presented with specific environmental cues. A better understanding of the relationship of stemness to niche-related phenotypic plasticity could lead to alternative treatment strategies...
September 8, 2016: IEEE Transactions on Bio-medical Engineering
https://www.readbyqxmd.com/read/28076489/robotic-surgery-bioethical-aspects
#12
Rodrigo Siqueira-Batista, Camila Ribeiro Souza, Polyana Mendes Maia, Sávio Lana Siqueira
Introduction: The use of robots in surgery has been increasingly common today, allowing the emergence of numerous bioethical issues in this area. Objective: To present review of the ethical aspects of robot use in surgery. Method: Search in Pubmed, SciELO and Lilacs crossing the headings "bioethics", "surgery", "ethics", "laparoscopy" and "robotic". Results: Of the citations obtained, were selected 17 articles, which were used for the preparation of the article...
November 2016: Arquivos Brasileiros de Cirurgia Digestiva: ABCD, Brazilian Archives of Digestive Surgery
https://www.readbyqxmd.com/read/28070545/energy-dissipation-dataset-for-reversible-logic-gates-in-quantum-dot-cellular-automata
#13
Ali Newaz Bahar, Mohammad Maksudur Rahman, Nur Mohammad Nahid, Md Kamrul Hassan
This paper presents an energy dissipation dataset of different reversible logic gates in quantum-dot cellular automata. The proposed circuits have been designed and verified using QCADesigner simulator. Besides, the energy dissipation has been calculated under three different tunneling energy level at temperature T=2 K. For estimating the energy dissipation of proposed gates; QCAPro tool has been employed.
February 2017: Data in Brief
https://www.readbyqxmd.com/read/28017865/a-multi-scale-method-for-modeling-degradation-of-bioresorbable-polyesters
#14
Taohong Zhang, Shaonan Zhou, Xiaohao Gao, Zhiyong Yang, Leran Sun, Dezheng Zhang
: A multi-scale model using the cellular automata (CA) and kinetic Monte Carlo (KMC) methods is presented to simulate the degradation process of bioresorbable polyesters such as polylactide (PLA), polyglycolide (PGA) and their copolymers. The model considers the underlying chemical and physical events such as polymer chain scission, oligomer production, crystallization induced by polymer chain scissions, oligomer diffusion and microstructure evolution due to erosion of the small chains...
December 23, 2016: Acta Biomaterialia
https://www.readbyqxmd.com/read/28001076/simulation-of-vertical-surfactant-distributions-in-drying-latex-films
#15
A Gromer, F Thalmann, P Hébraud, Y Holl
Following our previous contribution ( Gromer, A. et al. Langmuir 2015 , 31 , 10983 - 10994 ) presenting a new simulation tool devoted to particle distributions in drying latex films, this Article describes the prediction of surfactant concentration profiles in the vertical direction during the complete film formation process. The simulation is inspired by cellular automata and equations by Routh and co-workers. It includes effects that were not considered before: surfactant convection by water and surfactant desorption upon particle deformation...
January 5, 2017: Langmuir: the ACS Journal of Surfaces and Colloids
https://www.readbyqxmd.com/read/27983633/urban-growth-modeling-using-cellular-automata-with-multi-temporal-remote-sensing-images-calibrated-by-the-artificial-bee-colony-optimization-algorithm
#16
Fereydoun Naghibi, Mahmoud Reza Delavar, Bryan Pijanowski
Cellular Automata (CA) is one of the most common techniques used to simulate the urbanization process. CA-based urban models use transition rules to deliver spatial patterns of urban growth and urban dynamics over time. Determining the optimum transition rules of the CA is a critical step because of the heterogeneity and nonlinearities existing among urban growth driving forces. Recently, new CA models integrated with optimization methods based on swarm intelligence algorithms were proposed to overcome this drawback...
December 14, 2016: Sensors
https://www.readbyqxmd.com/read/27943025/a-theoretical-approach-to-analyze-the-parametric-influence-on-spatial-patterns-of-spodoptera-frugiperda-j-e-smith-lepidoptera-noctuidae-populations
#17
A G Garcia, W A C Godoy
Studies of the influence of biological parameters on the spatial distribution of lepidopteran insects can provide useful information for managing agricultural pests, since the larvae of many species cause serious impacts on crops. Computational models to simulate the spatial dynamics of insect populations are increasingly used, because of their efficiency in representing insect movement. In this study, we used a cellular automata model to explore different patterns of population distribution of Spodoptera frugiperda (J...
December 10, 2016: Neotropical Entomology
https://www.readbyqxmd.com/read/27934782/can-conventional-phase-change-memory-devices-be-scaled-down-to-single-nanometre-dimensions
#18
Hasan Hayat, Krisztian Kohary, C David Wright
The scaling potential of 'mushroom-type' phase-change memory devices is evaluated, down to single-nanometre dimensions, using physically realistic simulations that combine electro-thermal modelling with a Gillespie Cellular Automata phase-transformation approach. We found that cells with heater contact sizes as small as 6 nm could be successfully amorphized and re-crystallized (RESET and SET) using moderate excitation voltages. However, to enable the efficient formation of amorphous domes during RESET in small cells (heater contact diameters of 10 nm or less), it was necessary to improve the thermal confinement of the cell to reduce heat loss via the electrodes...
January 20, 2017: Nanotechnology
https://www.readbyqxmd.com/read/27874024/exploring-spatio-temporal-dynamics-of-cellular-automata-for-pattern-recognition-in-networks
#19
Gisele Helena Barboni Miranda, Jeaneth Machicao, Odemir Martinez Bruno
Network science is an interdisciplinary field which provides an integrative approach for the study of complex systems. In recent years, network modeling has been used for the study of emergent phenomena in many real-world applications. Pattern recognition in networks has been drawing attention to the importance of network characterization, which may lead to understanding the topological properties that are related to the network model. In this paper, the Life-Like Network Automata (LLNA) method is introduced, which was designed for pattern recognition in networks...
November 22, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27854282/cellular-automata-based-application-for-driver-assistance-in-indoor-parking-areas
#20
Cándido Caballero-Gil, Pino Caballero-Gil, Jezabel Molina-Gil
This work proposes an adaptive recommendation mechanism for smart parking that takes advantage of the popularity of smartphones and the rise of the Internet of Things. The proposal includes a centralized system to forecast available indoor parking spaces, and a low-cost mobile application to obtain data of actual and predicted parking occupancy. The described scheme uses data from both sources bidirectionally so that the centralized forecast system is fed with data obtained with the distributed system based on smartphones, and vice versa...
November 15, 2016: Sensors
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