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https://www.readbyqxmd.com/read/28748205/dataset-demonstrating-the-temperature-effect-on-average-output-polarization-for-qca-based-reversible-logic-gates
#1
Md Kamrul Hassan, Nur Mohammad Nahid, Ali Newaz Bahar, Mohammad Maksudur Rahman Bhuiyan, Md Abdullah-Al-Shafi, Kawsar Ahmed
Quantum-dot cellular automata (QCA) is a developing nanotechnology, which seems to be a good candidate to replace the conventional complementary metal-oxide-semiconductor (CMOS) technology. In this article, we present the dataset of average output polarization (AOP) for basic reversible logic gates presented in Ali Newaz et al. (2016) [1]. QCADesigner 2.0.3 has been employed to analysis the AOP of reversible gates at different temperature levels in Kelvin (K) unit.
August 2017: Data in Brief
https://www.readbyqxmd.com/read/28736575/identification-of-bifurcation-transitions-in-biological-regulatory-networks-using-answer-set-programming
#2
Louis Fippo Fitime, Olivier Roux, Carito Guziolowski, Loïc Paulevé
BACKGROUND: Numerous cellular differentiation processes can be captured using discrete qualitative models of biological regulatory networks. These models describe the temporal evolution of the state of the network subject to different competing transitions, potentially leading the system to different attractors. This paper focusses on the formal identification of states and transitions that are crucial for preserving or pre-empting the reachability of a given behaviour. METHODS: In the context of non-deterministic automata networks, we propose a static identification of so-called bifurcations, i...
2017: Algorithms for Molecular Biology: AMB
https://www.readbyqxmd.com/read/28721495/diversity-and-survival-of-artificial-lifeforms-under-sedimentation-and-random-motion
#3
Nicolas Glade, Olivier Bastien, Pascal Ballet
Cellular automata are often used to explore the numerous possible scenarios of what could have occurred at the origins of life and before, during the prebiotic ages, when very simple molecules started to assemble and organise into larger catalytic or informative structures, or to simulate ecosystems. Artificial self-maintained spatial structures emerge in cellular automata and are often used to represent molecules or living organisms. They converge generally towards homogeneous stationary soups of still-life creatures...
July 18, 2017: Theory in Biosciences, Theorie in Den Biowissenschaften
https://www.readbyqxmd.com/read/28705234/in-silico-characterization-of-cell-cell-interactions-using-a-cellular-automata-model-of-cell-culture
#4
Takanori Kihara, Kosuke Kashitani, Jun Miyake
BACKGROUND: Cell proliferation is a key characteristic of eukaryotic cells. During cell proliferation, cells interact with each other. In this study, we developed a cellular automata model to estimate cell-cell interactions using experimentally obtained images of cultured cells. RESULTS: We used four types of cells; HeLa cells, human osteosarcoma (HOS) cells, rat mesenchymal stem cells (MSCs), and rat smooth muscle A7r5 cells. These cells were cultured and stained daily...
July 14, 2017: BMC Research Notes
https://www.readbyqxmd.com/read/28696316/light-mediated-self-organization-of-sunflower-stands-increases-oil-yield-in-the-field
#5
Mónica López Pereira, Victor O Sadras, William Batista, Jorge J Casal, Antonio J Hall
Here, we show a unique crop response to intraspecific interference, whereby neighboring sunflower plants in a row avoid each other by growing toward a more favorable light environment and collectively increase production per unit land area. In high-density stands, a given plant inclined toward one side of the interrow space, and the immediate neighbors inclined in the opposite direction. This process started early as an incipient inclination of pioneer plants, and the arrangement propagated gradually as a "wave" of alternate inclination that persisted until maturity...
July 25, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28680654/a-quantum-samaritan-s-dilemma-cellular-automaton
#6
Ramón Alonso-Sanz, Haozhen Situ
The dynamics of a spatial quantum formulation of the iterated Samaritan's dilemma game with variable entangling is studied in this work. The game is played in the cellular automata manner, i.e. with local and synchronous interaction. The game is assessed in fair and unfair contests, in noiseless scenarios and with disrupting quantum noise.
June 2017: Royal Society Open Science
https://www.readbyqxmd.com/read/28671565/efficient-depth-enhancement-using-a-combination-of-color-and-depth-information
#7
Kyungjae Lee, Yuseok Ban, Sangyoun Lee
Studies on depth images containing three-dimensional information have been performed for many practical applications. However, the depth images acquired from depth sensors have inherent problems, such as missing values and noisy boundaries. These problems significantly affect the performance of applications that use a depth image as their input. This paper describes a depth enhancement algorithm based on a combination of color and depth information. To fill depth holes and recover object shapes, asynchronous cellular automata with neighborhood distance maps are used...
July 1, 2017: Sensors
https://www.readbyqxmd.com/read/28618473/approximate-probabilistic-cellular-automata-for-the-dynamics-of-single-species-populations-under-discrete-logisticlike-growth-with-and-without-weak-allee-effects
#8
J Ricardo G Mendonça, Yeva Gevorgyan
We investigate one-dimensional elementary probabilistic cellular automata (PCA) whose dynamics in first-order mean-field approximation yields discrete logisticlike growth models for a single-species unstructured population with nonoverlapping generations. Beginning with a general six-parameter model, we find constraints on the transition probabilities of the PCA that guarantee that the ensuing approximations make sense in terms of population dynamics and classify the valid combinations thereof. Several possible models display a negative cubic term that can be interpreted as a weak Allee factor...
May 2017: Physical Review. E
https://www.readbyqxmd.com/read/28617348/urban-ecological-security-simulation-and-prediction-using-an-improved-cellular-automata-ca-approach-a-case-study-for-the-city-of-wuhan-in-china
#9
Yuan Gao, Chuanrong Zhang, Qingsong He, Yaolin Liu
Ecological security is an important research topic, especially urban ecological security. As highly populated eco-systems, cities always have more fragile ecological environments. However, most of the research on urban ecological security in literature has focused on evaluating current or past status of the ecological environment. Very little literature has carried out simulation or prediction of future ecological security. In addition, there is even less literature exploring the urban ecological environment at a fine scale...
June 15, 2017: International Journal of Environmental Research and Public Health
https://www.readbyqxmd.com/read/28608625/computing-in-verotoxin
#10
Andrew Adamatzky
We develop an excitable automata model of a protein verotoxin and demonstrate that logic gates and circuits are realised in the model via interacting patterns of excitation. By sampling potential input pairs of nodes, we calculate frequencies of logic gates which occurred in the verotoxin model for various parameters of node excitation rules. We show that overall the gates can be arranged in the following hierarchy of descending frequencies: AND>OR>AND-NOT>XOR. We demonstrate realisations of one-bit half-adder and controlled-not gates and estimate memory capacity of the verotoxin molecule...
June 13, 2017: Chemphyschem: a European Journal of Chemical Physics and Physical Chemistry
https://www.readbyqxmd.com/read/28540852/association-of-polyunsaturated-saturated-fatty-acids-to-metabolic-syndrome-cardiovascular-risk-factors-and-lipoprotein-a-in-hypertensive-type-2-diabetic-patients
#11
Amira Fatma Bennacer, Elmahdi Haffaf, Ghouti Kacimi, Brahim Oudjit, Elhadj-Ahmed Koceir
The interactions between fatty acids (FA) classes: polyunsaturated (PUFA-ω6, PUFA-ω3), saturated (SFA), EPA (eicosapentaenoic acid-ω3), DHA (docosahexaenoic-ω3) and cardiometabolic syndrome (CMS) clusters, thrombosis development and vascular inflammation are subtle. This relationship is mediated by insulin resistance (IR), endothelial dysfunction, platelet aggregation disorder and atherosclerosis. OBJECTIVES: We investigated whether PUFA/SFA - PUFA-ω6/PUFA-ω3 ratios and EPA + DHA can be associated with predictive atherothrombogenic biomarkers status in type 2 diabetes (T2D) patients with or without hypertension (HT)...
June 1, 2017: Annales de Biologie Clinique
https://www.readbyqxmd.com/read/28536438/optimizing-radiotherapy-protocols-using-computer-automata-to-model-tumour-cell-death-as-a-function-of-oxygen-diffusion-processes
#12
Perrine Paul-Gilloteaux, Vincent Potiron, Grégory Delpon, Stéphane Supiot, Sophie Chiavassa, François Paris, Sylvain V Costes
The concept of hypofractionation is gaining momentum in radiation oncology centres, enabled by recent advances in radiotherapy apparatus. The gain of efficacy of this innovative treatment must be defined. We present a computer model based on translational murine data for in silico testing and optimization of various radiotherapy protocols with respect to tumour resistance and the microenvironment heterogeneity. This model combines automata approaches with image processing algorithms to simulate the cellular response of tumours exposed to ionizing radiation, modelling the alteration of oxygen permeabilization in blood vessels against repeated doses, and introducing mitotic catastrophe (as opposed to arbitrary delayed cell-death) as a means of modelling radiation-induced cell death...
May 23, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28531644/safety-evaluation-of-driver-cognitive-failures-and-driving-errors-on-right-turn-filtering-movement-at-signalized-road-intersections-based-on-fuzzy-cellular-automata-fca-model
#13
Chen Chai, Yiik Diew Wong, Xuesong Wang
This paper proposes a simulation-based approach to estimate safety impact of driver cognitive failures and driving errors. Fuzzy Logic, which involves linguistic terms and uncertainty, is incorporated with Cellular Automata model to simulate decision-making process of right-turn filtering movement at signalized intersections. Simulation experiments are conducted to estimate the relationships between cognitive failures and driving errors with safety performance. Simulation results show Different types of cognitive failures are found to have varied relationship with driving errors and safety performance...
July 2017: Accident; Analysis and Prevention
https://www.readbyqxmd.com/read/28529345/compositional-schedulability-analysis-of-real-time-actor-based-systems
#14
Mohammad Mahdi Jaghoori, Frank de Boer, Delphine Longuet, Tom Chothia, Marjan Sirjani
We present an extension of the actor model with real-time, including deadlines associated with messages, and explicit application-level scheduling policies, e.g.,"earliest deadline first" which can be associated with individual actors. Schedulability analysis in this setting amounts to checking whether, given a scheduling policy for each actor, every task is processed within its designated deadline. To check schedulability, we introduce a compositional automata-theoretic approach, based on maximal use of model checking combined with testing...
2017: Acta Informatica
https://www.readbyqxmd.com/read/28513208/self-organization-of-vocabularies-under-different-interaction-orders
#15
Javier Vera
Traditionally, the formation of vocabularies has been studied by agent-based models (primarily, the naming game) in which random pairs of agents negotiate word-meaning associations at each discrete time step. This article proposes a first approximation to a novel question: To what extent is the negotiation of word-meaning associations influenced by the order in which agents interact? Automata networks provide the adequate mathematical framework to explore this question. Computer simulations suggest that on two-dimensional lattices the typical features of the formation of word-meaning associations are recovered under random schemes that update small fractions of the population at the same time; by contrast, if larger subsets of the population are updated, a periodic behavior may appear...
2017: Artificial Life
https://www.readbyqxmd.com/read/28507669/continuous-variables-logic-via-coupled-automata-using-a-dnazyme-cascade-with-feedback
#16
S Lilienthal, M Klein, R Orbach, I Willner, F Remacle, R D Levine
The concentration of molecules can be changed by chemical reactions and thereby offer a continuous readout. Yet computer architecture is cast in textbooks in terms of binary valued, Boolean variables. To enable reactive chemical systems to compute we show how, using the Cox interpretation of probability theory, one can transcribe the equations of chemical kinetics as a sequence of coupled logic gates operating on continuous variables. It is discussed how the distinct chemical identity of a molecule allows us to create a common language for chemical kinetics and Boolean logic...
March 1, 2017: Chemical Science
https://www.readbyqxmd.com/read/28505838/correlations-induced-by-depressing-synapses-in-critically-self-organized-networks-with-quenched-dynamics
#17
João Guilherme Ferreira Campos, Ariadne de Andrade Costa, Mauro Copelli, Osame Kinouchi
In a recent work, mean-field analysis and computer simulations were employed to analyze critical self-organization in networks of excitable cellular automata where randomly chosen synapses in the network were depressed after each spike (the so-called annealed dynamics). Calculations agree with simulations of the annealed version, showing that the nominal branching ratio σ converges to unity in the thermodynamic limit, as expected of a self-organized critical system. However, the question remains whether the same results apply to the biological case where only the synapses of firing neurons are depressed (the so-called quenched dynamics)...
April 2017: Physical Review. E
https://www.readbyqxmd.com/read/28505740/weakly-coupled-map-lattice-models-for-multicellular-patterning-and-collective-normalization-of-abnormal-single-cell-states
#18
Vladimir García-Morales, José A Manzanares, Salvador Mafe
We present a weakly coupled map lattice model for patterning that explores the effects exerted by weakening the local dynamic rules on model biological and artificial networks composed of two-state building blocks (cells). To this end, we use two cellular automata models based on (i) a smooth majority rule (model I) and (ii) a set of rules similar to those of Conway's Game of Life (model II). The normal and abnormal cell states evolve according to local rules that are modulated by a parameter κ. This parameter quantifies the effective weakening of the prescribed rules due to the limited coupling of each cell to its neighborhood and can be experimentally controlled by appropriate external agents...
April 2017: Physical Review. E
https://www.readbyqxmd.com/read/28498871/towards-implementation-of-cellular-automata-in-microbial-fuel-cells
#19
Michail-Antisthenis I Tsompanas, Andrew Adamatzky, Georgios Ch Sirakoulis, John Greenman, Ioannis Ieropoulos
The Microbial Fuel Cell (MFC) is a bio-electrochemical transducer converting waste products into electricity using microbial communities. Cellular Automaton (CA) is a uniform array of finite-state machines that update their states in discrete time depending on states of their closest neighbors by the same rule. Arrays of MFCs could, in principle, act as massive-parallel computing devices with local connectivity between elementary processors. We provide a theoretical design of such a parallel processor by implementing CA in MFCs...
2017: PloS One
https://www.readbyqxmd.com/read/28495347/a-web-based-clinical-decision-support-system-for-gestational-diabetes-automatic-diet-prescription-and-detection-of-insulin-needs
#20
Estefanía Caballero-Ruiz, Gema García-Sáez, Mercedes Rigla, María Villaplana, Belen Pons, M Elena Hernando
BACKGROUND: The growth of diabetes prevalence is causing an increasing demand in health care services which affects the clinicians' workload as medical resources do not grow at the same rate as the diabetic population. Decision support tools can help clinicians with the inspection of monitoring data, providing a preliminary analysis to ease their interpretation and reduce the evaluation time per patient. This paper presents Sinedie, a clinical decision support system designed to manage the treatment of patients with gestational diabetes...
June 2017: International Journal of Medical Informatics
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