keyword
https://read.qxmd.com/read/38520836/biocontrol-mechanism-of-bacillus-siamensis-sp-qn-2-mo-1-against-tomato-fusarium-wilt-disease-during-fruit-postharvest-and-planting
#21
JOURNAL ARTICLE
Miaoyi Zhang, Xiaojuan Li, Yongbo Pan, Dengfeng Qi, Dengbo Zhou, Yufeng Chen, Junting Feng, Yongzan Wei, Yankun Zhao, Kai Li, Wei Wang, Lu Zhang, Jianghui Xie
Tomato fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici (Fol) is a highly destructive disease, resulting in severe economic losses of global tomato production annually. An eco-friendly alternative to chemical fungicide using biological control agents (BCAs) is urgently needed. Here, Bacillus siamensis QN2 MO-1 was isolated from Noli fruit and had a strong antagonistic activity against Fol in vitro and in vivo. Strain QN2 MO-1 also exhibited a broad-spectrum antifungal activity against the selected 14 phytopathogenic fungi...
March 14, 2024: Microbiological Research
https://read.qxmd.com/read/38515377/trim6-facilitates-sars-cov-2-proliferation-by-catalyzing-the-k29-typed-ubiquitination-of-np-to-enhance-the-ability-to-bind-viral-genomes
#22
JOURNAL ARTICLE
Jian Zhou, Yuzheng Zhou, Xia-Fei Wei, Lujie Fan, Xiang Gao, Yunfei Li, Yezi Wu, Wei Feng, XiaoTong Shen, Lei Liu, Gang Xu, Zheng Zhang
The Nucleocapsid Protein (NP) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is not only the core structural protein required for viral packaging, but also participates in the regulation of viral replication, and its post-translational modifications such as phosphorylation have been shown to be an important strategy for regulating virus proliferation. Our previous work identified NP could be ubiquitinated, as confirmed by two independent studies. But the function of NP ubiquitination is currently unknown...
March 2024: Journal of Medical Virology
https://read.qxmd.com/read/38507653/adaptation-in-unstable-environments-and-global-gene-losses-small-but-stable-gene-networks-by-the-may-wigner-theory
#23
JOURNAL ARTICLE
Shaohua Xu, Shao Shao, Xiao Feng, Sen Li, Lingjie Zhang, Weihong Wu, Min Liu, Miles E Tracy, Cairong Zhong, Zixiao Guo, Chung-I Wu, Suhua Shi, Ziwen He
Although gene loss is common in evolution, it remains unclear whether it is an adaptive process. In a survey of seven major mangrove clades that are woody plants in the intertidal zones of daily environmental perturbations, we noticed that they generally evolved reduced gene numbers. We then focused on the largest clade of Rhizophoreae and observed the continual gene set reduction in each of the eight species. A great majority of gene losses are concentrated on environmental interaction processes, presumably to cope with the constant fluctuations in the tidal environments...
March 20, 2024: Molecular Biology and Evolution
https://read.qxmd.com/read/38498220/crispr-cas9-mediated-knockout-of-bsr-d1-enhances-the-blast-resistance-of-rice-in-northeast-china
#24
JOURNAL ARTICLE
Ying Zhang, Xiu-Feng Lin, Li Li, Ri-Hua Piao, Songquan Wu, Anqi Song, Mengmeng Gao, Yong-Mei Jin
The blast resistance allele of OsBsr-d1 does not exist in most japonica rice varieties of Jilin Province in China. The development of Bsr-d1 knockout mutants via CRISPR/Cas9 enhances broad-spectrum resistance to rice blast in Northeast China. Rice blast is a global disease that has a significant negative impact on rice yield and quality. Due to the complexity and variability of the physiological races of rice blast, controlling rice blast is challenging in agricultural production. Bsr-d1, a negative transcription factor that confers broad-spectrum resistance to rice blast, was identified in the indica rice cultivar Digu; however, its biological function in japonica rice varieties is still unclear...
March 18, 2024: Plant Cell Reports
https://read.qxmd.com/read/38493342/scencore-leveraging-single-cell-epigenetic-data-to-predict-chromatin-conformation-using-graph-embedding
#25
JOURNAL ARTICLE
Ziheng Duan, Siwei Xu, Shushrruth Sai Srinivasan, Ahyeon Hwang, Che Yu Lee, Feng Yue, Mark Gerstein, Yu Luan, Matthew Girgenti, Jing Zhang
Dynamic compartmentalization of eukaryotic DNA into active and repressed states enables diverse transcriptional programs to arise from a single genetic blueprint, whereas its dysregulation can be strongly linked to a broad spectrum of diseases. While single-cell Hi-C experiments allow for chromosome conformation profiling across many cells, they are still expensive and not widely available for most labs. Here, we propose an alternate approach, scENCORE, to computationally reconstruct chromatin compartments from the more affordable and widely accessible single-cell epigenetic data...
January 22, 2024: Briefings in Bioinformatics
https://read.qxmd.com/read/38490747/a-nature-derived-hetero-structured-pro-healing-bioadhesive-patch-for-high-performance-sealing-of-wet-tissues
#26
JOURNAL ARTICLE
Shilin Liu, Yangfan Xiang, Zekun Liu, Lan Li, Ruyi Dang, Huicong Zhang, Feng Wei, Yuqin Chen, Xiang Yang, Mengjie Mao, Yu Shrike Zhang, Jinlin Song, Ximu Zhang
Tissue adhesives are promising alternatives to sutures and staples to achieve wound closure and hemostasis. However, they often do not work well on tissues that are soaked in blood or other biological fluids, and organs that are typically exposed to a variety of harsh environments such as different pH values, nonhomogeneous distortions, continuous expansions and contractions, or high pressures. In this study, a nature-derived multilayered hetero-bioadhesive patch (skin secretion of Andrias davidianus (SSAD)-Patch) based on hydrophilic/hydrophobic pro-healing bioadhesives derived from the SSAD is developed, which is designed to form pressure-triggered strong adhesion with wet tissues...
March 15, 2024: Advanced Materials
https://read.qxmd.com/read/38487170/novel-insight-into-the-therapeutical-potential-of-flavonoids-from-traditional-chinese-medicine-against-cerebral-ischemia-reperfusion-injury
#27
REVIEW
Jing Zhou, Feiyue Sun, Wenli Zhang, Zhitao Feng, Yi Yang, Zhigang Mei
Cerebral ischemia/reperfusion injury (CIRI) is a major contributor to poor prognosis of ischemic stroke. Flavonoids are a broad family of plant polyphenols which are abundant in traditional Chinese medicine (TCM) and have beneficial effects on several diseases including ischemic stroke. Accumulating studies have indicated that flavonoids derived from herbal TCM are effective in alleviating CIRI after ischemic stroke in vitro or in vivo , and exhibit favourable therapeutical potential. Herein, we systematically review the classification, metabolic absorption, neuroprotective efficacy, and mechanisms of TCM flavonoids against CIRI...
2024: Frontiers in Pharmacology
https://read.qxmd.com/read/38484812/self-assembled-ferritin-based-nanoparticles-elicit-a-robust-broad-spectrum-protective-immune-response-against-sars-cov-2-variants
#28
JOURNAL ARTICLE
Weiqi Wang, Xianyong Meng, Huan Cui, Cheng Zhang, Shen Wang, Na Feng, Yongkun Zhao, Tiecheng Wang, Feihu Yan, Xianzhu Xia
The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and its variants has resulted in global economic losses and posed a threat to human health. The pandemic highlights the urgent need for an efficient, easily producible, and broad-spectrum vaccine. Here, we present a potentially universal strategy for the rapid and general design of vaccines, focusing on the design and testing of omicron BA.5 RBD-conjugated self-assembling ferritin nanoparticles (NPs)...
March 12, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38484808/preparation-of-highly-elastic-superhydrophobic-cnf-fe-3-o-4-based-materials-modified-in-aqueous-phase-for-oil-water-separation
#29
JOURNAL ARTICLE
Yipeng Liang, Feng Liu, Enfu Wang, Yu Miao, Weisheng Han, Yifan Chen, Wenbiao Zhang, Luming Li, Jingda Huang
Magnetic superhydrophobic materials have broad application prospect in oil-water separation. In this study, a magnetic and superhydrophobic aerogel with lamellar structure was successfully prepared using cellulose nanofibrils (CNF) as the skeleton, Fe3 O4 as the magnetic ion, 1H, 1H, 2H, 2H trialkylfluorooctane triethoxysilane (FS) and 3-(2-aminoethyl amino)-propyl trimethoxysilane (AS) as the combined modifier. The prepared aerogel shows lower density (38.63 mg/cm3 ), excellent magnetic (15.13 emu/g), high elasticity and good oil sorption properties (21 g/g)...
March 12, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38483056/design-and-synthesis-of-apn-and-3clpro-dual-target-inhibitors-based-on-stsbpt-with-anticoronavirus-activity
#30
JOURNAL ARTICLE
Youle Zheng, Jin Feng, Yanbin Song, Yixin Yu, Min Ling, Mengjia Zhang, Haijiao Xie, Wentao Li, Xu Wang
Coronaviruses (CoVs) have continuously posed a threat to human and animal health. However, existing antiviral drugs are still insufficient in overcoming the challenges caused by multiple strains of CoVs. And methods for developing multi-target drugs are limited in terms of exploring drug targets with similar functions or structures. In this study, four rounds of structural design and modification on salinomycin were performed for novel antiviral compounds. It was based on the strategy of similar topological structure binding properties of protein targets (STSBPT), resulting in the high-efficient synthesis of the optimal compound M1, which could bind to aminopeptidase N and 3C-like protease from hosts and viruses, respectively, and exhibit a broad-spectrum antiviral effect against severe acute respiratory syndrome CoV 2 pseudovirus, porcine epidemic diarrhea virus, transmissible gastroenteritis virus, feline infectious peritonitis virus and mouse hepatitis virus...
March 2024: Journal of Medical Virology
https://read.qxmd.com/read/38467228/multifunctional-chitosan-based-lanthanide-luminescent-hydrogel-with-stretchability-adhesion-self-healing-color-tunability-and-antibacterial-ability
#31
JOURNAL ARTICLE
Jin-Tao Wang, Ying-Ying Pei, Bing-Jie Han, Rui-Shuang Sun, Ruo-Tong Zuo, Gai-Xia Cui, Hao Zhang, Ze-Zhong Cao, Lin Jin, Qing-Feng Li
Lanthanide luminescent hydrogels have broad application prospects in various fields. However, most of lanthanide hydrogels possess relatively simple functions, which is not conducive to practical applications. Therefore, it is becoming increasingly urgent to develop multifunctional hydrogels. Herein, a multifunctional chitosan-based lanthanide luminescent hydrogel with ultra-stretchability, multi-adhesion, excellent self-healing, emission color tunability, and good antibacterial ability was prepared by a simple one-step free radical polymerization...
March 9, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38457978/characterization-of-two-novel-hydrolases-from-sphingopyxis-sp-dbs4-for-enantioselective-degradation-of-chiral-herbicide-diclofop-methyl
#32
JOURNAL ARTICLE
Zhenbo Mao, Man Song, Ruiqi Zhao, Yuan Liu, Yumeng Zhu, Xinyu Liu, Hailong Liang, Huijun Zhang, Xiaomin Wu, Guangli Wang, Feng Li, Long Zhang
Diclofop-methyl, an aryloxyphenoxypropionate (AOPP) herbicide, is a chiral compound with two enantiomers. Microbial detoxification and degradation of various enantiomers is garnering immense research attention. However, enantioselective catabolism of diclofop-methyl has been rarely explored, especially at the molecular level. This study cloned two novel hydrolase genes (dcmA and dcmH) in Sphingopyxis sp. DBS4, and characterized them for diclofop-methyl degradation. DcmA, a member of the amidase superfamily, exhibits 26...
March 5, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38454157/the-receptor-binding-domain-of-sars-cov-2-omicron-subvariants-targets-siglec-9-to-decrease-its-immunogenicity-by-preventing-macrophage-phagocytosis
#33
JOURNAL ARTICLE
Xin He, Xiantao Zhang, Bolin Wu, Jieyi Deng, Yongli Zhang, Airu Zhu, Yaochang Yuan, Yingtong Lin, Achun Chen, Jinzhu Feng, Xiumei Wang, Shijian Wu, Yingying Liu, Jie Liu, Yalin Wang, Rong Li, Chaofeng Liang, Quyu Yuan, Yu Liang, Qiannan Fang, Zhihui Xi, Wenjie Li, Liting Liang, Zhenglai Zhang, Hui Tang, Yi Peng, Changwen Ke, Xiancai Ma, Weibin Cai, Ting Pan, Bingfeng Liu, Kai Deng, Jun Chen, Jincun Zhao, Xuepeng Wei, Ran Chen, Yiwen Zhang, Hui Zhang
The development of a vaccine specific to severe acute respiratory syndrome coronavirus 2 Omicron has been hampered due to its low immunogenicity. Here, using reverse mutagenesis, we found that a phenylalanine-to-serine mutation at position 375 (F375S) in the spike protein of Omicron to revert it to the sequence found in Delta and other ancestral strains significantly enhanced the immunogenicity of Omicron vaccines. Sequence FAPFFAF at position 371-377 in Omicron spike had a potent inhibitory effect on macrophage uptake of receptor-binding domain (RBD) nanoparticles or spike-pseudovirus particles containing this sequence...
March 7, 2024: Nature Immunology
https://read.qxmd.com/read/38452856/identification-of-fangchinoline-as-a-broad-spectrum-enterovirus-inhibitor-through-reporter-virus-based-high-content-screening
#34
JOURNAL ARTICLE
Qiu-Yan Zhang, Jia-Qi Li, Qi Li, Yang Zhang, Zhe-Rui Zhang, Xiao-Dan Li, Hong-Qing Zhang, Cheng-Lin Deng, Feng-Xia Yang, Yi Xu, Bo Zhang
Hand, foot, and mouth disease (HFMD) is a common pediatric illness mainly caused by enteroviruses, which are important human pathogens. Currently, there are no available antiviral agents for the therapy of enterovirus infection. In this study, an excellent high-content antiviral screening system utilizing the EV-A71-eGFP reporter virus was developed. Using this screening system, we screened a drug library containing 1042 natural compounds to identify potential EV-A71 inhibitors. Fangchinoline (FAN), a bis-benzylisoquinoline alkaloid, exhibits potential inhibitory effects against various enteroviruses that cause HFMD, such as EV-A71, CV-A10, CV-B3 and CV-A16...
March 5, 2024: Virologica Sinica
https://read.qxmd.com/read/38449477/autologous-cryo-shocked-neutrophils-enable-targeted-therapy-of-sepsis-via-broad-spectrum-neutralization-of-pro-inflammatory-cytokines-and-endotoxins
#35
JOURNAL ARTICLE
Qiuxia Gao, Yan Yan, Jie Zhang, Xiaoxue Li, Jiamei Wang, Yi Feng, Peiran Li, Huanhuan Wang, Yunlong Zhang, Lingjie He, Zhiyan Shan, Bin Li
Background: Sepsis is a life-threatening disease characterized by multiple organ failure due to excessive activation of the inflammatory response and cytokine storm. Despite recent advances in the clinical use of anti-cytokine biologics, sepsis treatment efficacy and improvements in mortality remain unsatisfactory, largely due to the mechanistic complexity of immune regulation and cytokine interactions. Methods: In this study, a broad-spectrum anti-inflammatory and endotoxin neutralization strategy was developed based on autologous "cryo-shocked" neutrophils (CS-Neus) for the management of sepsis...
2024: Frontiers in Chemistry
https://read.qxmd.com/read/38449057/tetramethylpyrazine-alleviates-hypoxia-induced-proliferation-migration-and-inflammatory-response-of-fibroblast-like-synoviocytes-via-inhibiting-the-hif-1%C3%AE-circcdc42bpb-pathway
#36
JOURNAL ARTICLE
Yu-Jing Zhang, Li-Feng Chen, Xu Li, Jian-Hua Chen, Zhang-Kui Tan
OBJECTIVES: Rheumatoid arthritis (RA) is a chronic inflammatory joint disease, which might trigger cartilage, bone damage, and disability. Recent studies have suggested that Tetramethylpyrazine (TMP), an alkaloid monomer isolated from the rhizome of the traditional herbal medicine Ligusticum wallichii Franch, exerts a broad spectrum of pharmacological properties, containing anti-inflammatory. This study aimed to analyze the role and underlying mechanism of TMP in RA. METHODS: Under Hypoxia condition, RA-Fibroblast-like synoviocyte (FLS) were treated with TMP at different doses...
March 6, 2024: Advances in Rheumatology
https://read.qxmd.com/read/38442600/toxicity-of-substituted-p-phenylenediamine-antioxidants-and-their-derived-novel-quinones-on-aquatic-bacterium-acute-effects-and-mechanistic-insights
#37
JOURNAL ARTICLE
Wei Wang, Yi Chen, Jiacheng Fang, Feng Zhang, Guangbo Qu, Zongwei Cai
Substituted para-phenylenediamines (PPDs) are synthetic chemicals used globally for rubber antioxidation, with their quinone derivatives (PPD-Qs) raising particular environmental concerns due to their severe toxicity to aquatic organisms. Emerging research has identified a variety of novel PPD-Qs ubiquitously detected in the environment, yet experimental proof for the toxicity of PPD-Qs has not been forthcoming due to the unavailability of bulk standards, leaving substantial gaps in the prioritization and mechanistic investigation of such novel pollutants...
February 27, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38437310/broad-narrowband-switchable-terahertz-absorber-based-on-dirac-semimetal-and-strontium-titanate-for-temperature-sensing
#38
JOURNAL ARTICLE
Yong Gang Zhang, Wei Liu, Hai Yun Yao, Lan Ju Liang, Xin Yan, Ming Ji Zong, Shan Gao, Cheng Cheng Huang, Fu Qiu, Zhen Wei Feng, Rui Zhang, Xiao Fei Hu, Zhen Hua Li, Zi Qun Wang
A broadband and narrowband switchable terahertz (THz) absorber based on a bulk Dirac semimetal (BDS) and strontium titanate (STO) is proposed. Narrowband and broadband absorption can be switched by adjusting the Fermi level of the BDS. When the Fermi level of the BDS is 100 meV, the device is an absorber with three narrowband absorption peaks. The frequencies are 0.44, 0.86, and 1.96 THz, respectively, when the temperature of STO is 250 K. By adjusting the temperature of STO from 250 to 500 K, the blue shifts of the frequencies are approximately 0...
February 10, 2024: Applied Optics
https://read.qxmd.com/read/38418906/antiviral-drug-recognition-and-elevator-type-transport-motions-of-cnt3
#39
JOURNAL ARTICLE
Nicholas J Wright, Feng Zhang, Yang Suo, Lingyang Kong, Ying Yin, Justin G Fedor, Kedar Sharma, Mario J Borgnia, Wonpil Im, Seok-Yong Lee
Nucleoside analogs have broad clinical utility as antiviral drugs. Key to their systemic distribution and cellular entry are human nucleoside transporters. Here, we establish that the human concentrative nucleoside transporter 3 (CNT3) interacts with antiviral drugs used in the treatment of coronavirus infections. We report high-resolution single-particle cryo-electron microscopy structures of bovine CNT3 complexed with antiviral nucleosides N4 -hydroxycytidine, PSI-6206, GS-441524 and ribavirin, all in inward-facing states...
February 28, 2024: Nature Chemical Biology
https://read.qxmd.com/read/38417159/protein-coronas-derived-from-mucus-act-as-both-spear-and-shield-to-regulate-transferrin-functionalized-nanoparticle-transcellular-transport-in-enterocytes
#40
JOURNAL ARTICLE
Dan Yang, Yuqi Feng, Ying Yuan, Linxuan Zhang, Yao Zhou, Adam C Midgley, Yanrong Wang, Ning Liu, Guoliang Li, Xiaolin Yao, Dechun Liu
The epithelial mucosa is a key biological barrier faced by gastrointestinal, intraoral, intranasal, ocular, and vaginal drug delivery. Ligand-modified nanoparticles demonstrate excellent ability on this process, but their efficacy is diminished by the formation of protein coronas (PCs) when they interact with biological matrices. PCs are broadly implicated in affecting the fate of NPs in vivo and in vitro, yet few studies have investigated PCs formed during interactions of NPs with the epithelial mucosa, especially mucus...
February 28, 2024: ACS Nano
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