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https://www.readbyqxmd.com/read/29775460/genus-wide-comparison-of-pseudovibrio-bacterial-genomes-reveal-diverse-adaptations-to-different-marine-invertebrate-hosts
#1
Anoop Alex, Agostinho Antunes
Bacteria belonging to the genus Pseudovibrio have been frequently found in association with a wide variety of marine eukaryotic invertebrate hosts, indicative of their versatile and symbiotic lifestyle. A recent comparison of the sponge-associated Pseudovibrio genomes has shed light on the mechanisms influencing a successful symbiotic association with sponges. In contrast, the genomic architecture of Pseudovibrio bacteria associated with other marine hosts has received less attention. Here, we performed genus-wide comparative analyses of 18 Pseudovibrio isolated from sponges, coral, tunicates, flatworm, and seawater...
2018: PloS One
https://www.readbyqxmd.com/read/29773467/human-microbiome-restoration-and-safety
#2
REVIEW
Eric Banan-Mwine Daliri, Charles Nkufi Tango, Byong H Lee, Deog-Hwan Oh
The human gut microbiome consists of many bacteria which are in symbiotic relationship with human beings. The gut microbial metabolism, as well as the microbial-host co-metabolism, has been found to greatly influence health and disease. Factors such as diet, antibiotic use and lifestyle have been associated with alterations in the gut microbial community and may result in several pathological conditions. For this reason, several strategies including fecal microbiota transplant and probiotic administration have been applied and proven to be feasible and effective in restoring the gut microbiota in humans...
May 9, 2018: International Journal of Medical Microbiology: IJMM
https://www.readbyqxmd.com/read/29770190/effects-of-molecular-hydrogen-dissolved-alkaline-electrolyzed-water-on-intestinal-environment-in-mice
#3
Yasuki Higashimura, Yasunori Baba, Ryo Inoue, Tomohisa Takagi, Kazuhiko Uchiyama, Katsura Mizushima, Yasuko Hirai, Chihiro Ushiroda, Yoshinori Tanaka, Yuji Naito
Increasing evidence indicates that molecular hydrogen-dissolved alkaline electrolyzed water (AEW) has various physiological activities such as antioxidative activity. Gut microbiota are deeply associated with our health through a symbiotic relationship. Recent reports have described that most gastrointestinal microbial species encode the genetic capacity to metabolize molecular hydrogen, meaning that molecular hydrogen might affect the gut microbial composition. Nevertheless, AEW effects on gut microbiota remain unknown...
January 2018: Medical Gas Research
https://www.readbyqxmd.com/read/29769762/polymicrobial-synergy-and-dysbiosis-an-overview
#4
REVIEW
Hawaabi Faqeer Mohd Shaikh, Suvarna Hanmantgouda Patil, Tanvi Shyamsundar Pangam, Khushboo Vijaysinh Rathod
The oral fissure is immensely inhabited with a number of polymicrobial colonies similar to the intestinal system. Periodontitis is a dysbiotic disease resulting from deviation in subgingival Gram-positive bacteria to Gram-negative bacteria shift from Gram-positive bacteria. The development of periodontal dysbiosis occurs over a broadened timeframe, which slowly turns the symbiotic association of host and microbe to pathogenic. This review highlights a recent paradigm of periodontitis progression has been postulated which challenges the traditional concept of periodontitis being induced by few particular periopathogens such as belonging to red complex, but by a more comprehensive dysbiotic-synergistic community...
March 2018: Journal of Indian Society of Periodontology
https://www.readbyqxmd.com/read/29769571/gmbehl1-a-bes1-bzr1-family-protein-negatively-regulates-soybean-nodulation
#5
Qiqi Yan, Lixiang Wang, Xia Li
Brassinosteroids (BRs) play an essential role in plant growth, and BRI1-EMS suppressor 1 (BES1)/brassinazole-resistant 1 (BZR1) family transcription factors integrate a variety of plant signaling pathways. Despite the fact that BRs inhibit nodulation in leguminous plants, how BRs modulate rhizobia-host interactions and nodule morphogenesis is unknown. Here, we show that GmBEHL1, a soybean homolog of Arabidopsis BES1/BZR1 homolog 1 (BEH1), is an interacting partner of Nodule Number Control 1, a transcriptional repressor that mediates soybean nodulation...
May 16, 2018: Scientific Reports
https://www.readbyqxmd.com/read/29768135/seeing-the-light-the-roles-of-red-and-blue-light-sensing-in-plant-microbes
#6
Gwyn A Beattie, Bridget M Hatfield, Haili Dong, Regina S McGrane
Plants collect, concentrate, and conduct light throughout their tissues, thus enhancing light availability to their resident microbes. This review explores the role of photosensing in the biology of plant-associated bacteria and fungi, including the molecular mechanisms of red-light sensing by phytochromes and blue-light sensing by LOV (light-oxygen-voltage)-domain proteins in these microbes. Bacteriophytochromes function as major drivers of the bacterial transcriptome and mediate light-regulated suppression of virulence, motility, and conjugation in some phytopathogens and light-regulated induction of the photosynthetic apparatus in a stem-nodulating symbiont...
May 16, 2018: Annual Review of Phytopathology
https://www.readbyqxmd.com/read/29767790/identification-and-functional-characterization-of-a-maize-phosphate-transporter-induced-by-mycorrhiza-formation
#7
Fang Liu, Yunjian Xu, Guomin Han, Wei Wang, Xiaoyu Li, Beijiu Cheng
Phosphorus (P) is an essential macronutrient for plant life, although it is frequently not readily available to crops. Arbuscular mycorrhiza fungi (AMF) can improve plant P levels by inducing the expression of some phosphate (Pi) transporters. Symbiotic Pi uptake by Pi transporters is crucial for AMF colonization and arbuscule dynamics. However, the functions of mycorrhiza-inducible maize Pi transporters are largely unclear. We focused on the interaction between the Pi concentration and AMF colonization in maize, and detecting the induction of Pi transporter...
May 14, 2018: Plant & Cell Physiology
https://www.readbyqxmd.com/read/29767334/are-phloem-derived-amino-acids-the-origin-of-the-elevated-malate-concentration-in-the-xylem-sap-following-mineral-n-starvation-in-soybean
#8
Simone C Vitor, Luciano do Amarante, Ladaslav Sodek
A substantial increase in malate in the xylem sap of soybean subjected to mineral N starvation originates mainly from aspartate, a prominent amino acid of the phloem. A substantial increase in xylem malate was found when non-nodulated soybean plants were transferred to a N-free medium. Nodulated plants growing in the absence of mineral N and, therefore, dependent on symbiotic N2 fixation also contained elevated concentrations of malate in the xylem sap. When either nitrate or ammonium was supplied, malate concentrations in the xylem sap were low, both for nodulated and non-nodulated plants...
May 16, 2018: Planta
https://www.readbyqxmd.com/read/29766224/stable-and-enriched-cenarchaeum-symbiosum-and-uncultured-betaproteobacteria-hf1-in-the-microbiome-of-the-mediterranean-sponge-haliclona-fulva-demospongiae-haplosclerida
#9
Erika García-Bonilla, Pedro F B Brandão, Thierry Pérez, Howard Junca
Sponges harbor characteristic microbiomes derived from symbiotic relationships shaping their lifestyle and survival. Haliclona fulva is encrusting marine sponge species dwelling in coralligenous accretions or semidark caves of the Mediterranean Sea and the near Atlantic Ocean. In this work, we characterized the abundance and core microbial community composition found in specimens of H. fulva by means of electron microscopy and 16S amplicon Illumina sequencing. We provide evidence of its low microbial abundance (LMA) nature...
May 15, 2018: Microbial Ecology
https://www.readbyqxmd.com/read/29765384/the-hydrophobin-like-omssp1-may-be-an-effector-in-the-ericoid-mycorrhizal-symbiosis
#10
Salvatore Casarrubia, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine-Radhouane Khouja, Yohann Daguerre, Claire Veneault-Fourrey, Francis M Martin, Silvia Perotto, Elena Martino
Mutualistic and pathogenic plant-colonizing fungi use effector molecules to manipulate the host cell metabolism to allow plant tissue invasion. Some small secreted proteins (SSPs) have been identified as fungal effectors in both ectomycorrhizal and arbuscular mycorrhizal fungi, but it is currently unknown whether SSPs also play a role as effectors in other mycorrhizal associations. Ericoid mycorrhiza is a specific endomycorrhizal type that involves symbiotic fungi mostly belonging to the Leotiomycetes (Ascomycetes) and plants in the family Ericaceae...
2018: Frontiers in Plant Science
https://www.readbyqxmd.com/read/29765359/comparing-microbiome-sampling-methods-in-a-wild-mammal-fecal-and-intestinal-samples-record-different-signals-of-host-ecology-evolution
#11
Melissa R Ingala, Nancy B Simmons, Claudia Wultsch, Konstantinos Krampis, Kelly A Speer, Susan L Perkins
The gut microbiome is a community of host-associated symbiotic microbes that fulfills multiple key roles in host metabolism, immune function, and tissue development. Given the ability of the microbiome to impact host fitness, there is increasing interest in studying the microbiome of wild animals to better understand these communities in the context of host ecology and evolution. Human microbiome research protocols are well established, but wildlife microbiome research is still a developing field. Currently, there is no standardized set of best practices guiding the collection of microbiome samples from wildlife...
2018: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29762699/cultivable-bacteria-from-pectinatella-magnifica-and-the-surrounding-water-in-south-bohemia-indicate-potential-new-gammaproteobacterial-betaproteobacterial-and-firmicutes-taxa
#12
Hana Salmonová, Jirí Killer, Vera Bunešová, Martina Geigerová, Eva Vlková
Pectinatella magnifica is a freshwater bryozoan, which has become a subject of scientific interest because of its invasive expansion worldwide. To obtain a comprehensive overview of its influence on environments, information on associated bacteria is needed. In this study, cultivable bacteria associated with P. magnifica were investigated. In total, 253 isolates were selected for preliminary identification by MALDI-TOF mass spectrometry and clustered based on REP-PCR profiles. Among these, 169 strains were selected and identified using 16S rRNA gene comparative analyses...
May 14, 2018: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/29761320/strong-specificity-and-network-modularity-at-a-very-fine-phylogenetic-scale-in-the-lichen-genus-peltigera
#13
P L Chagnon, N Magain, J Miadlikowska, F Lutzoni
Identifying the drivers and evolutionary consequences of species interactions is a major goal of community ecology. Network-based analyses can provide mathematical tools to detect non-random patterns of interactions, and potentially help predicting the consequences of such patterns on evolutionary dynamics of symbiotic systems. Here, we characterize the structure of a lichen network at a very fine phylogenetic scale, by identifying the photosynthetic partners (i.e., cyanobacteria of the genus Nostoc) of lichenized fungi belonging to a monophyletic section of a single genus (i...
May 14, 2018: Oecologia
https://www.readbyqxmd.com/read/29760298/a-newly-designed-primer-revealed-high-phylogenetic-diversity-of-endozoicomonas-in-coral-reefs
#14
Jia-Ho Shiu, Jiun-Yan Ding, Ching-Hung Tseng, Shueh-Ping Lou, Takuma Mezaki, Yu-Ting Wu, Hsiang-Iu Wang, Sen-Lin Tang
Endozoicomonas bacteria are commonly regarded as having a potentially symbiotic relationship with their coral hosts. However, their diversity and phylogeny in samples collected from various sources remain unclear. Therefore, we designed an Endozoicomonas-specific primer paired with a bacterial universal primer to detect the 16S ribosomal RNA (rRNA) genes of this taxon and conducted an in-depth investigation of the Endozoicomonas community structure in reef-building corals. The primer had high specificity in the V3-V4 region (95...
May 12, 2018: Microbes and Environments
https://www.readbyqxmd.com/read/29759900/detection-of-the-type-iii-secretion-system-and-its-phylogenetic-and-symbiotic-characterization-in-peanut-bradyrhizobia-isolated-from-guangdong-province-china
#15
Huaqin Ruan, Meijuan Hu, Jingyu Chen, Xue Li, Ting Li, Yongxiu Lai, En Tao Wang, Jun Gu
The distribution of rhcRST and rhcJ-C1 fragments located in different loci of the type III secretion system (T3SS) gene cluster in the peanut-nodulating bradyrhizobia isolated from Guangdong Province, China was investigated by PCR-based sequencing. T3SS was detected in approximately one-third of the peanut bradyrhizobial strains and the T3SS-harboring strains belonging to different Bradyrhizobium genomic species. Diverse T3SS groups corresponding to different symbiotic gene types were defined among the 23 T3SS-harboring strains...
April 8, 2018: Systematic and Applied Microbiology
https://www.readbyqxmd.com/read/29756575/effects-of-stress-on-the-mucus-microbial-interactions-in-the-gut
#16
Jianwen He, Huiduo Guo, Weijiang Zheng, Wen Yao
Stress shows both direct- and indirect-effects on the functions of the gastrointestinal tract, in particular on the mucus physiology and the composition of microbiota. Mucus mainly consists of heavily glycosylated proteins called mucins, which are secreted by goblet cells. The gut mucus layer is a pivotal part of the intestinal protection and colonized by commensal microbes, essential for the development and health of the host. There is a symbiotic interaction between intestinal microbiota and the host cells...
May 14, 2018: Current Protein & Peptide Science
https://www.readbyqxmd.com/read/29756204/distributions-of-ectomycorrhizal-and-foliar-endophytic-fungal-communities-associated-with-pinus-ponderosa-along-a-spatially-constrained-elevation-gradient
#17
Elizabeth A Bowman, A Elizabeth Arnold
PREMISE OF THE STUDY: Understanding distributions of plant-symbiotic fungi is important for projecting responses to environmental change. Many coniferous trees host ectomycorrhizal fungi (EM) in association with roots and foliar endophytic fungi (FE) in leaves. We examined how EM and FE associated with Pinus ponderosa each vary in abundance, diversity, and community structure over a spatially constrained elevation gradient that traverses four plant communities, 4°C in mean annual temperature, and 15 cm in mean annual precipitation...
May 13, 2018: American Journal of Botany
https://www.readbyqxmd.com/read/29755207/effect-of-the-epiphytic-bacterium-bacillus-sp-wpysw2-on-the-metabolism-of-pyropia-haitanensis
#18
Yuqin Xiong, Rui Yang, Xiaoxiao Sun, Huatian Yang, Haimin Chen
A variety of different symbiotic microbial communities are harbored on the surface of seaweeds, the interactions of which depend upon nutritional exchanges between the microbes and the hosts. Metabolomic profiling is able to provide a comprehensive and unbiased snapshot of the metabolites associated with seaweed-microbe interactions. In this study, the relationships between phycosphere bacteria and the red alga Pyropia haitanensis were investigated on a metabolomic basis using gas chromatography-mass spectrometry, and the pathways of the interactions between the seaweed and its associated phycospheric microbes were revealed...
2018: Journal of Applied Phycology
https://www.readbyqxmd.com/read/29755204/cryopreservation-studies-of-an-artificial-co-culture-between-the-cobalamin-requiring-green-alga-lobomonas-rostrata-and-the-bacterium-mesorhizobium-loti
#19
Christian J A Ridley, John G Day, Alison G Smith
Algal-bacterial co-cultures, rather than cultures of algae alone, are regarded as having the potential to enhance productivity and stability in industrial algal cultivation. As with other inocula in biotechnology, to avoid loss of production strains, it is important to develop preservation methods for the long-term storage of these cultures, and one of the most commonly used approaches is cryopreservation. However, whilst there are many reports of cryopreserved xenic algal cultures, little work has been reported on the intentional preservation of both algae and beneficial bacteria in xenic cultures...
2018: Journal of Applied Phycology
https://www.readbyqxmd.com/read/29754180/diversity-roles-and-biotechnological-applications-of-symbiotic-microorganisms-in-the-gut-of-termite
#20
REVIEW
Jing Zhou, Jiwei Duan, Mingkun Gao, Ying Wang, Xiaohua Wang, Kai Zhao
Termites are global pests and can cause serious damage to buildings, crops, and plantation forests. The symbiotic intestinal flora plays an important role in the digestion of cellulose and nitrogen in the life of termites. Termites and their symbiotic microbes in the gut form a synergistic system. These organism work together to digest lignocellulose to make the termites grow on nitrogen deficient food. In this paper, the diversity of symbiotic microorganisms in the gut of termites, including protozoan, spirochetes, actinomycetes, fungus and bacteria, and their role in the digestion of lignocellulose and also the biotechnological applications of these symbiotic microorganisms are discussed...
May 12, 2018: Current Microbiology
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