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https://www.readbyqxmd.com/read/28338677/integrated-metabolism-in-sponge-microbe-symbiosis-revealed-by-genome-centered-metatranscriptomics
#1
Lucas Moitinho-Silva, Cristina Díez-Vives, Giampiero Batani, Ana Is Esteves, Martin T Jahn, Torsten Thomas
Despite an increased understanding of functions in sponge microbiomes, the interactions among the symbionts and between symbionts and host are not well characterized. Here we reconstructed the metabolic interactions within the sponge Cymbastela concentrica microbiome in the context of functional features of symbiotic diatoms and the host. Three genome bins (CcPhy, CcNi and CcThau) were recovered from metagenomic data of C. concentrica, belonging to the proteobacterial family Phyllobacteriaceae, the Nitrospira genus and the thaumarchaeal order Nitrosopumilales...
March 24, 2017: ISME Journal
https://www.readbyqxmd.com/read/28337893/adjuvant-treatment-with-a-symbiotic-in-patients-with-inflammatory-non-allergic-rhinitis
#2
M Gelardi, C De Luca, S Taliente, M L Fiorella, N Quaranta, C Russo, A Ciofalo, A Macchi, M Mancini, P Rosso, V Seccia, F Guagnini, G Ciprandi
Inflammatory non-allergic rhinitis (INAR) is characterized by the presence of an inflammatory infiltrate and a non-IgE-mediated pathogenesis. This retrospective, controlled, multicentre study investigated whether a symbiotic, containing Lactobacillus acidophilus NCFM, Bifidobacterium lactis, and fructo-oligosaccharides (Pollagen®, Allergy Therapeutics, Italy), prescribed as adjunctive therapy to a standard pharmacological treatment, was able to reduce symptom severity, endoscopic features, and nasal cytology in 93 patients (49 males and 44 females, mean age 36...
January 2017: Journal of Biological Regulators and Homeostatic Agents
https://www.readbyqxmd.com/read/28336910/populus-trichocarpa-encodes-small-effector-like-secreted-proteins-that-are-highly-induced-during-mutualistic-symbiosis
#3
Jonathan M Plett, Hengfu Yin, Ritesh Mewalal, Rongbin Hu, Ting Li, Priya Ranjan, Sara Jawdy, Henrique C De Paoli, George Butler, Tessa Maureen Burch-Smith, Hao-Bo Guo, Chun Ju Chen, Annegret Kohler, Ian C Anderson, Jessy L Labbé, Francis Martin, Gerald A Tuskan, Xiaohan Yang
During symbiosis, organisms use a range of metabolic and protein-based signals to communicate. Of these protein signals, one class is defined as 'effectors', i.e., small secreted proteins (SSPs) that cause phenotypical and physiological changes in another organism. To date, protein-based effectors have been described in aphids, nematodes, fungi and bacteria. Using RNA sequencing of Populus trichocarpa roots in mutualistic symbiosis with the ectomycorrhizal fungus Laccaria bicolor, we sought to determine if host plants also contain genes encoding effector-like proteins...
March 23, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28336178/symbiont-acquisition-and-replacement-as-a-source-of-ecological-innovation
#4
REVIEW
Sailendharan Sudakaran, Christian Kost, Martin Kaltenpoth
Nutritional symbionts play a major role in the ecology and evolution of insects. The recent accumulation of knowledge on the identity, function, genomics, and phylogenetic relationships of insect-bacteria symbioses provides the opportunity to assess the effects of symbiont acquisitions and replacements on the shift into novel ecological niches and subsequent lineage diversification. The megadiverse insect order Hemiptera presents a particularly large diversity of symbiotic associations that has frequently undergone shifts in symbiont localization and identity, which have contributed to the exploitation of nutritionally imbalanced diets such as plant saps or vertebrate blood...
March 20, 2017: Trends in Microbiology
https://www.readbyqxmd.com/read/28334162/biparental-transmission-of-verminephrobacter-symbionts-in-the-earthworm-aporrectodea-tuberculata-lumbricidae
#5
Laura-Carlota Paz, Andreas Schramm, Marie Braad Lund
Most lumbricid earthworms harbor species-specific Verminephrobacter symbionts in their excretory organs (nephridia). These symbionts are vertically transmitted via the cocoon, where they colonize the embryos. Despite cospeciation for >100 million years with their hosts, Verminephrobacter lack genome reduction and AT bias typical of evolutionary old, vertically transmitted symbionts, caused by recurring bottlenecks. We hypothesized that biparental symbiont transmission into the cocoon enabled genetic mixing and relieved the bottleneck, and tested biparental transmission experimentally for V...
February 23, 2017: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/28334155/genetic-diversity-of-symbiotic-paraburkholderia-species-isolated-from-nodules-of-mimosa-pudica-l-and-phaseolus-vulgaris-l-grown-in-soils-of-the-brazilian-atlantic-forest-mata-atl%C3%A3-ntica
#6
Rebeca Fuzinatto Dall Agnol, Caroline Bournaud, Sérgio Miana de Faria, Gilles Béna, Lionel Moulin, Mariangela Hungria
Some species of the genus Paraburkholderia that are able to nodulate and fix nitrogen in symbiosis with legumes are called β-rhizobia and represent a group of ecological and biotechnological importance. We used Mimosa pudica and Phaseolus vulgaris to trap 427 rhizobial isolates from rhizospheric soil of Mimoseae trees in the Brazilian Atlantic Forest. Eighty-four representative strains were selected according to the 16S rRNA haplotypes and taxonomically characterized using a concatenated 16S rRNA-recA phylogeny...
February 23, 2017: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/28333444/host-symbiont-interaction-model-explains-non-monotonic-response-of-soybean-growth-and-seed-production-to-nano-ceo2-exposure
#7
Tin Klanjscek, Erik B Muller, Patricia A Holden, Roger M Nisbet
Recent nanotoxicity studies have demonstrated non-monotonic dose-response mechanisms for planted soybean that have a symbiotic relationship with bacteroids in their root nodules: reduction of growth and seed production was greater for low, as compared to high, exposures. To investigate mechanistic underpinnings of the observed patterns, we formulated an energy budget model coupled to a toxicokinetic module describing bioaccumulation, and two toxicodynamic modules describing respectively toxic effects on host plant and symbionts...
March 23, 2017: Environmental Science & Technology
https://www.readbyqxmd.com/read/28333317/characterization-of-a-gene-encoding-a-membrane-protein-that-affects-exopolysaccharide-production-and-intracellular-mg2-concentrations-in-ensifer-meliloti
#8
Justin P Hawkins, Ivan J Oresnik
Exopolysaccharides play an important role in the physiology of a bacterial cell. Ensifer meliloti is capable of producing at least two types of exopolysaccharides (EPS); succinoglycan, and galactoglucan. In E. meliloti exopolysaccharides are best known for their role in mediating interaction with its symbiotic hosts. It was previously shown that high concentrations of Mg 2+ or K + were capable of suppressing the mucoid phenotype associated with galactoglucan production in an expR+ derivative of Rm1021. In an attempt to determine how Mg 2+ regulates galactoglucan production, SRmD363 was mutagenized and screened for mutants which were visibly mucoid at high concentrations of magnesium...
March 16, 2017: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/28333211/glutathione-affects-the-transport-activity-of-rhizobium-leguminosarum-3841-and-is-essential-for-efficient-nodulation
#9
Guojun Cheng, Ramakrishnan Karunakaran, Alison K East, Olaya Munoz-Azcarate, Philip S Poole
As glutathione (GSH) plays an essential role in growth and symbiotic capacity of rhizobia, a glutathione synthetase (gshB) mutant of Rhizobium leguminosarum biovar viciae 3841 (Rlv3841) was characterised. It fails to efficiently utilise various compounds as a sole carbon source, including glucose, succinate, glutamine and histidine, and shows 60-69% reduction in uptake rates of glucose, succinate and the non-metabolisable substrate α-amino isobutyric acid (AIB). The defect in glucose uptake can be overcome by addition of exogenous GSH, indicating GSH, but not its bacterial synthesis, is required for efficient transport...
February 23, 2017: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/28331229/transcriptome-analysis-of-genes-involved-in-dendrobine-biosynthesis-in-dendrobium-nobile-lindl-infected-with-mycorrhizal-fungus-mf23-mycena-sp
#10
Qing Li, Gang Ding, Biao Li, Shun-Xing Guo
Content determination and microscopic observation proved that dendrobine accumulation in the stem of Dendrobium nobile Lindl. increased after infection with mycorrhizal fungus MF23 (Mycena sp.). Large-scale transcriptome sequencing of symbiotic and asymbiotic D. nobile revealed that 30 unigenes encoding proteins were possibly related to the biosynthesis of dendrobine sesquiterpene backbone. A qRT-PCR experiment of 16 unigenes, selected randomly, proved that there were significant changes in the expression levels of AACT, MVD, PMK and TPS21 at 9 weeks after inoculation...
March 22, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28330923/allometric-growth-in-reef-building-corals
#11
Maria Dornelas, Joshua S Madin, Andrew H Baird, Sean R Connolly
Predicting demographic rates is a critical part of forecasting the future of ecosystems under global change. Here, we test if growth rates can be predicted from morphological traits for a highly diverse group of colonial symbiotic organisms: scleractinian corals. We ask whether growth is isometric or allometric among corals, and whether most variation in coral growth rates occurs at the level of the species or morphological group. We estimate growth as change in planar area for 11 species, across five morphological groups and over 5 years...
March 29, 2017: Proceedings. Biological Sciences
https://www.readbyqxmd.com/read/28330195/identification-and-characterization-of-endophytic-bacteria-isolated-from-in-vitro-cultures-of-peach-and-pear-rootstocks
#12
Fakhra Liaqat, Rengin Eltem
Endophytes are microorganisms which live symbiotically with almost all varieties of plant and in turn helping the plant in a number of ways. Instead of satisfactory surface sterilization approaches, repeatedly occurring bacterial growth on in vitro rootstock cultures of peach and pear was identified and isolated as endophytic bacteria in our present study. Five different isolates from peach rootstocks were molecularly identified by 16S rRNA gene sequencing as Brevundimonas diminuta, Leifsonia shinshuensis, Sphingomonas parapaucimobilis Brevundimonas vesicularis, Agrobacterium tumefaciens while two endophytic isolates of pear were identified as Pseudoxanthomonas mexicana, and Stenotrophomonas rhizophilia...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28327966/de-novo-transcriptome-assemblies-of-four-xylem-sap-feeding-insects
#13
Erica E Tassone, Charles C Cowden, S J Castle
Background: Spittle bugs and sharpshooters are well-known xylem sap-feeding insects and vectors of the phytopathogenic bacterium Xylella fastidiosa (Wells), a causal agent of Pierce's disease of grapevines and other crop diseases. Specialized feeding on nutrient-deficient xylem sap is relatively rare among insect herbivores, and only limited genomic and transcriptomic information has been generated for xylem-sap feeders. To develop a more comprehensive understanding of biochemical adaptations and symbiotic relationships that support survival on a nutritionally austere dietary source, transcriptome assemblies for three sharpshooter species and one spittlebug species were produced...
February 24, 2017: GigaScience
https://www.readbyqxmd.com/read/28327890/draft-genome-of-the-honey-bee-ectoparasitic-mite-tropilaelaps-mercedesae-is-shaped-by-the-parasitic-life-history
#14
Xiaofeng Dong, Stuart D Armstrong, Dong Xia, Benjamin L Makepeace, Alistair C Darby, Tatsuhiko Kadowaki
Background: The number of managed honey bee colonies has considerably decreased in many developed countries in recent years and ectoparasitic mites are considered as major threats to honey bee colonies and health. However, their general biology remains poorly understood. Results: We sequenced the genome of Tropilaelaps mercedesae , the prevalent ectoparasitic mite infesting honey bees in Asia and predicted 15,190 protein-coding genes which were well supported by the mite transcriptomes and proteomic data...
February 22, 2017: GigaScience
https://www.readbyqxmd.com/read/28326980/gene-sequence-analyses-of-the-healthy-oral-microbiome-in-humans-and-companion-animals
#15
Eric M Davis
It has long been accepted that certain oral bacterial species are responsible for the development of periodontal disease. However, the focus of microbial and immunological research is shifting from studying the organisms associated with disease to examining the indigenous microbial inhabitants that are present in health. Microbiome refers to the aggregate genetic material of all microorganisms living in, or on, a defined habitat. Recent developments in gene sequence analysis have enabled detection and identification of bacteria from polymicrobial samples, including subgingival plaque...
June 2016: Journal of Veterinary Dentistry
https://www.readbyqxmd.com/read/28326066/beneficial-microorganisms-for-corals-bmc-proposed-mechanisms-for-coral-health-and-resilience
#16
REVIEW
Raquel S Peixoto, Phillipe M Rosado, Deborah Catharine de Assis Leite, Alexandre S Rosado, David G Bourne
The symbiotic association between the coral animal and its endosymbiotic dinoflagellate partner Symbiodinium is central to the success of corals. However, an array of other microorganisms associated with coral (i.e., Bacteria, Archaea, Fungi, and viruses) have a complex and intricate role in maintaining homeostasis between corals and Symbiodinium. Corals are sensitive to shifts in the surrounding environmental conditions. One of the most widely reported responses of coral to stressful environmental conditions is bleaching...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28324254/pilot-testing-model-to-uncover-industrial-symbiosis-in-brazilian-industrial-clusters
#17
Adriana Valélia Saraceni, Luis Mauricio Resende, Pedro Paulo de Andrade Júnior, Joseane Pontes
The main objective of this study was to create a pilot model to uncover industrial symbiosis practices in Brazilian industrial clusters. For this purpose, a systematic revision was conducted in journals selected from two categories of the ISI Web of Knowledge: Engineering, Environmental and Engineering, Industrial. After an in-depth revision of literature, results allowed the creation of an analysis structure. A methodology based on fuzzy logic was applied and used to attribute the weights of industrial symbiosis variables...
March 21, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28323446/leguminosae-native-nodulating-bacteria-from-a-gold-mine-as-contaminated-soil-multi-resistance-to-trace-elements-and-possible-role-in-plant-growth-and-mineral-nutrition
#18
Wesley de M Rangel, Silvia M de Oliveira Longatti, Paulo A A Ferreira, Daiane S Bonaldi, Amanda A Guimarães, Sofie Thijs, Nele Weyens, Jaco Vangronsveld, Fatima M S Moreira
Efficient N2-fixing Leguminosae nodulating bacteria resistant to As may facilitate plant growth on As-contaminated sites. In order to identify bacteria possessing these features, 24 strains were isolated from nodules of the trap species Crotalaria spectabilis (12) and Stizolobium aterrimum (12) growing on an As-contaminated gold mine site. 16S rRNA gene sequencing revealed that most of the strains belonged to the group of α-Proteobacteria, being representatives of the genera Bradyrhizobium, Rhizobium, Inquilinus, Labrys, Bosea, Starkeya and Methylobacterium...
March 21, 2017: International Journal of Phytoremediation
https://www.readbyqxmd.com/read/28323278/acceptable-symbiont-cell-size-differs-among-cnidarian-species-and-may-limit-symbiont-diversity
#19
Elise Biquand, Nami Okubo, Yusuke Aihara, Vivien Rolland, David C Hayward, Masayuki Hatta, Jun Minagawa, Tadashi Maruyama, Shunichi Takahashi
Reef-building corals form symbiotic relationships with dinoflagellates of the genus Symbiodinium. Symbiodinium are genetically and physiologically diverse, and corals may be able to adapt to different environments by altering their dominant Symbiodinium phylotype. Notably, each coral species associates only with specific Symbiodinium phylotypes, and consequently the diversity of symbionts available to the host is limited by the species specificity. Currently, it is widely presumed that species specificity is determined by the combination of cell-surface molecules on the host and symbiont...
March 21, 2017: ISME Journal
https://www.readbyqxmd.com/read/28322330/distribution-of-bathyarchaeota-communities-across-different-terrestrial-settings-and-their-potential-ecological-functions
#20
Xing Xiang, Ruicheng Wang, Hongmei Wang, Linfeng Gong, Baiying Man, Ying Xu
High abundance and widespread distribution of the archaeal phylum Bathyarchaeota in marine environment have been recognized recently, but knowledge about Bathyarchaeota in terrestrial settings and their correlation with environmental parameters is fairly limited. Here we reported the abundance of Bathyarchaeota members across different ecosystems and their correlation with environmental factors by constructing 16S rRNA clone libraries of peat from the Dajiuhu Peatland, coupling with bioinformatics analysis of 16S rRNA data available to date in NCBI database...
March 21, 2017: Scientific Reports
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