keyword
https://read.qxmd.com/read/38652750/organ-delimited-gene-regulatory-networks-provide-high-accuracy-in-candidate-transcription-factor-selection-across-diverse-processes
#1
JOURNAL ARTICLE
Rajeev Ranjan, Sonali Srijan, Somaiah Balekuttira, Tina Agarwal, Melissa Ramey, Madison Dobbins, Rachel Kuhn, Xiaojin Wang, Karen Hudson, Ying Li, Kranthi Varala
Organ-specific gene expression datasets that include hundreds to thousands of experiments allow the reconstruction of organ-level gene regulatory networks (GRNs). However, creating such datasets is greatly hampered by the requirements of extensive and tedious manual curation. Here, we trained a supervised classification model that can accurately classify the organ-of-origin for a plant transcriptome. This K-Nearest Neighbor-based multiclass classifier was used to create organ-specific gene expression datasets for the leaf, root, shoot, flower, and seed in Arabidopsis thaliana ...
April 30, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38651845/dermoscopic-features-of-subcorneal-hematoma-on-the-palms-and-soles-differences-from-acral-melanoma
#2
JOURNAL ARTICLE
Sang-Hyeon Won, Kyung-Nam Bae, Kihyuk Shin, Hoon-Soo Kim, Hyun-Chang Ko, Byung-Soo Kim, Moon-Bum Kim
BACKGROUND: The diagnosis of subcorneal hematoma (SH) can be challenging because the clinical presentation of SH can resemble melanocytic lesions. Few studies have examined the characteristic dermoscopic features of SH, but a more detailed large-scale study is needed to overcome the diagnostic challenge of differentiating it from acral melanoma. OBJECTIVES: To describe the dermoscopic features of SH. METHODS: We evaluated the clinical and dermoscopic features of 50 SH lesions from 43 patients at the Pusan National University Hospitals (Busan and Yangsan)...
December 2023: Acta Dermatovenerologica Croatica: ADC
https://read.qxmd.com/read/38651763/the-road-less-taken-dihydroflavonol-4-reductase-inactivation-and-delphinidin-anthocyanin-loss-underpins-a-natural-intraspecific-flower-colour-variation
#3
JOURNAL ARTICLE
Darren C J Wong, Zemin Wang, James Perkins, Xin Jin, Grace Emma Marsh, Emma Grace John, Rod Peakall
Visual cues are of critical importance for the attraction of animal pollinators, however, little is known about the molecular mechanisms underpinning intraspecific floral colour variation. Here, we combined comparative spectral analysis, targeted metabolite profiling, multi-tissue transcriptomics, differential gene expression, sequence analysis and functional analysis to investigate a bee-pollinated orchid species, Glossodia major with common purple- and infrequent white-flowered morphs. We found uncommon and previously unreported delphinidin-based anthocyanins responsible for the conspicuous and pollinator-perceivable colour of the purple morph and three genetic changes underpinning the loss of colour in the white morph - (1) a loss-of-function (LOF; frameshift) mutation affecting dihydroflavonol 4-reductase (DFR1) coding sequence due to a unique 4-bp insertion, (2) specific downregulation of functional DFR1 expression and (3) the unexpected discovery of chimeric Gypsy transposable element (TE)-gene (DFR) transcripts with potential consequences to the genomic stability and post-transcriptional or epigenetic regulation of DFR...
April 23, 2024: Molecular Ecology
https://read.qxmd.com/read/38650137/-simmer-pus-and-grow-flesh-method-promotes-chronic-wound-healing-in-rats-via-bfgf-wnt-%C3%AE-catenin-signaling-pathway
#4
JOURNAL ARTICLE
Zhenpeng Xu, Erwei Cai, Suyuan Shan, Cheng Zhao, Feng Lin, Yanyan Wu
The purpose of this study was to explore the mechanism of "simmer pus and grow meat" method based on bFGF regulating WNT / β-Catenin signaling pathway. Of 100 SPF rats, 25 were randomly selected as blank group, and 75 rats were established chronic infectious wound model and divided into blank group, model group (normal saline treatment, n = 25), experimental group (purple and white ointment treatment, n = 25), and wet burn ointment group (wet burn treatment, n = 25). The wound healing rate of rats was compared...
March 31, 2024: Cellular and Molecular Biology
https://read.qxmd.com/read/38648687/evaluating-smartphone-based-optical-readouts-for-immunoassays-in-human-and-veterinary-healthcare-a-comparative-study
#5
JOURNAL ARTICLE
Melania Mesas Gómez, Esther Julián, Lara Armengou, Maria Isabel Pividori
Recent advances have significantly enhanced the use of smartphone devices for medical diagnostics. This study uses high-resolution cameras in mobile devices to capture and process bioassay images, enabling the quantification of diverse biomarkers across a range of diagnostic tests conducted on 96-well microplates. The study evaluates the effectiveness of this technology through protein quantification techniques and immunoassays that generate colorimetric responses at specific wavelengths. It includes the assessment of bicinchoninic acid and Bradford protein quantification methods, alongside a conventional immunoassay for detecting mare antibodies in colostrum to monitor foal immunodeficiencies...
April 21, 2024: Talanta
https://read.qxmd.com/read/38646410/unusual-metastasis-to-eyelid-from-extraocular-merkel-cell-carcinoma
#6
JOURNAL ARTICLE
Ahmet Özdemir, Volkan Yeter, Nurullah Koçak, Sultan Çalışkan
Merkel cell carcinoma (MCC) is an unusual skin tumor that has a significant rate of distant and local metastases. It is known that primary MCC of the eyelid usually occurs at the upper eyelid. Here we report an unusual case of MCC metastasis to the eyelid. A 63-year-old male was diagnosed with MCC three years earlier after initially presenting with a mass in his right thigh. After histopathological diagnosis, the patient received medical therapy. During treatment, he developed multiple distant metastases and a firm, purple, vascularized lesion on the upper eyelid...
April 19, 2024: Turkish Journal of Ophthalmology
https://read.qxmd.com/read/38646231/the-evaluation-of-upper-labial-swelling-an-arteriovenous-malformation
#7
Manu Babu, Aishwarya Kothari
Vascular malformations, which include disorders of the lymphatic or vascular systems, can appear in a variety of ways on radiographs, in the radiological department, and histologically. High-flow lesions with direct arteriovenous connections are known as arteriovenous malformations (AVMs). These lesions can cause soft tissue loss and deformity since they are difficult to diagnose early. This case report describes a 75-year-old female who presented with a severe bluish-purple swelling on her top lip. After conducting a thorough investigation, the patient's condition was quickly identified as AVM...
March 2024: Curēus
https://read.qxmd.com/read/38643704/milligram-scale-enantioresolution-of-promethazine-and-its-main-metabolites-determination-of-their-absolute-configuration-and-assessment-of-enantioselective-effects-on-human-sy-sy5y-cells
#8
JOURNAL ARTICLE
Maria Miguel Coelho, Inês Costa, Ana Carolina Ferreira de Albuquerque, Fernando Martins Dos Santos Junior, Bárbara Silva, Renata Silva, Carla Fernandes, Fernando Remião, Maria Elizabeth Tiritan
The misuse of pharmaceuticals has significantly increased in recent decades, becoming a major public health concern. The risks associated with medication misuse are particularly high in cases of overdose, especially when the active substances are chiral, as enantioselectivity plays an important role in toxicity. Promethazine (PMZ) is a chiral antihistamine marketed as a racemate and it is misused in "Purple Drank", a recreational drug beverage, that combines codeine and/or PMZ, with soda or alcohol leading to serious health consequences and fatalities in consumers around the world, particularly among teenagers...
April 15, 2024: Journal of Pharmaceutical and Biomedical Analysis
https://read.qxmd.com/read/38640470/ichthyosiform-lichen-planus-pigmentosus-in-a-19-year-old-male-patient-case-report
#9
Audi Sugiharto, Julius Gatmaitan, Johannes Dayrit
Lichen planus pigmentosus (LPP) is a condition characterized by persistent and asymptomatic brownish-black-to-blue or purple-gray pigmentation, predominantly in the face and sun-exposed areas, commonly in dark-skinned individuals. Several clinical variants of LPP have been reported. However, the ichthyosiform type of LPP has not been reported. We present a 19-year-old male patient who presented with a 7-year history of asymptomatic grayish macules; patches with fine scales on the face, trunk, and upper extremities; and grayish plaques with thick "ichthyosiform" scales on the lower extremities...
April 19, 2024: JMIR dermatology
https://read.qxmd.com/read/38637407/a-comprehensive-analysis-of-biopharmaceutical-products-listed-in-the-fda-s-purple-book
#10
REVIEW
Fuduan Chen, Hao Zhong, Ging Chan, Defang Ouyang
Although biopharmaceuticals constitute around 10% of the drug landscape, eight of the ten top-selling products were biopharmaceuticals in 2023. This study did a comprehensive analysis of the FDA's Purple Book database. Firstly, our research uncovered market trends and provided insights into biologics distributions. According to the investigation, although biotechnology has advanced and legislative shifts have made the approval process faster, there are still challenges to overcome, such as molecular instability and formulation design...
April 18, 2024: AAPS PharmSciTech
https://read.qxmd.com/read/38637271/a-224-bp-indel-in-the-promoter-of-pemyb114-accounts-for-anthocyanin-accumulation-of-skin-in-passion-fruit-passiflora-spp
#11
JOURNAL ARTICLE
Ting Fang, Mengzhen Wang, Ruijie He, Qiaowen Chen, Dayi He, Xuerong Chen, Yongkang Li, Rui Ren, Weijun Yu, Lihui Zeng
Passion fruit ( Passiflora spp.) is an important fruit tree in the family Passifloraceae. The color of the fruit skin, a significant agricultural trait, is determined by the content of anthocyanin in passion fruit. However, the regulatory mechanisms behind the accumulation of anthocyanin in different passion fruit skin colors remain unclear. In the study, we identified and characterized a R2R3-MYB transcription factor, PeMYB114 , which functions as a transcriptional activator in anthocyanin biosynthesis. Yeast one-hybrid system and dual-luciferase analysis showed that PeMYB114 could directly activate the expression of anthocyanin structural genes ( PeCHS and PeDFR )...
April 18, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38636751/development-of-toxic-gas-sensor-from-anthocyanin-embedded-polycaprolactone-co-polylactic-acid-nanofibrous-mat
#12
JOURNAL ARTICLE
Salhah D Al-Qahtani, Ghadah M Al-Senani
The colorless ammonia gas has been a significant intermediate in the industrial sector. However, prolonged exposure to ammonia causes harmful effects to organs or even death. Herein, an environmentally friendly solid-state ammonia sensor was developed utilizing colorimetric polycaprolactone-co-polylactic acid nanofibrous membrane. Pomegranate (Punica granatum L.) peel contains anthocyanin (ACN) as a naturally occurring spectroscopic probe. A mordant (potassium aluminum sulfate) is used to immobilize the anthocyanin direct dyestuff inside nanofibers, generating mordant/anthocyanin (M/ACN) coordinated complex nanoparticles...
April 15, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38633216/sirt1-p53-in-retinal-pigment-epithelial-cells-in-diabetic-retinopathy-a-gene-co-expression-analysis-and-he-ying-qing-re-formula-treatment
#13
JOURNAL ARTICLE
Shuyan Zhang, Jiajun Wu, Leilei Wang, Lin Mu, Xiaoyu Xu, Jiahui Li, Guoyi Tang, Guang Chen, Cheng Zhang, Yinjian Zhang, Yibin Feng
OBJECTIVE: Diabetic retinopathy (DR) is a severe diabetic complication that leads to severe visual impairment or blindness. He-Ying-Qing-Re formula (HF), a traditional Chinese medicinal concoction, has been identified as an efficient therapy for DR with retinal vascular dysfunction for decades and has been experimentally reported to ameliorate retinal conditions in diabetic mice. This study endeavors to explore the therapeutic potential of HF with key ingredients in DR and its underlying novel mechanisms...
2024: Frontiers in Molecular Biosciences
https://read.qxmd.com/read/38633042/silver-deposited-titanium-as-a-prophylactic-nano-coat-for-peri-implantitis
#14
JOURNAL ARTICLE
Vaibhav Madiwal, Jyutika Rajwade
Dental implant failures caused by bacterial infections are a significant concern for dental implantologists. We modified the titanium surface by depositing silver (Ti-Ag) using direct current (DC) sputtering and confirmed the formation of a 'nano coat' by X-ray photoelectron spectroscopy (XPS), surface profilometry and energy dispersive spectroscopy (EDS). Scanning electron microscopy (SEM) and atomic force microscopy (AFM) revealed the deposition of a uniform nano Ag thin film. A gradual increase in thickness was observed, and the film thickness (530 nm) at 5 min deposition time (Ti-Ag5 ) resulted in a reduction of the water contact angle (WCA, 15%) and an increase in surface energy (SFE, 22%) in comparison to the uncoated Ti surface...
April 16, 2024: Nanoscale advances
https://read.qxmd.com/read/38632534/an-anthocyanin-rich-extract-from-zea-mays-l-var-ceratina-alleviates-neuronal-cell-death-caused-by-hydrogen-peroxide-induced-cytotoxicity-in-sh-sy5y-cells
#15
JOURNAL ARTICLE
Nootchanat Mairuae, Nut Palachai, Parinya Noisa
The incidence of dementia is rising, with neuronal cell death from oxidative stress and apoptosis recognized as a significant contributor to its development. However, effective strategies to combat this condition are lacking, necessitating further investigation. This study aimed to assess the potential of an anthocyanin-rich extract from Zea mays L. var. ceratina (AZC) in alleviating neuronal cell death.Neurotoxicity was induced in SH-SY5Y cells using hydrogen peroxide (H2 O2 ) at a concentration of 200 µM...
April 17, 2024: BMC complementary medicine and therapies
https://read.qxmd.com/read/38632052/chemical-and-biological-study-of-flavonoid-related-plant-pigment-current-findings-and-beyond
#16
JOURNAL ARTICLE
Kumi Yoshida
Flavonoids are polyphenolic plant constituents. Anthocyanins are flavonoid pigments found in higher plants that show a wide variety of colors ranging from red through purple to blue. The blue color of the flowers is mostly attributed to anthocyanins. However, only a few types of anthocyanidin, chromophore of anthocyanin, exist in nature, and the extracted pigments are unstable with the color fading away. Therefore, the wide range and stable nature of colors in flowers has remained a mystery for more than a century...
April 17, 2024: Bioscience, Biotechnology, and Biochemistry
https://read.qxmd.com/read/38630600/growth-conditions-trigger-genotype-specific-metabolic-responses-that-affect-the-nutritional-quality-of-kale-cultivars
#17
JOURNAL ARTICLE
Hirofumi Ishihara, Sara Alegre, Jesús Pascual, Andrea Trotta, Wei Yang, Baoru Yang, Fatemeh Seyednasrollah, Meike Burow, Saijaliisa Kangasjärvi
Kales (Brassica oleracea convar acephala) are fast-growing, nutritious leafy vegetables ideal for year-round indoor farming. However, selection of best cultivars for growth under artificial lighting necessitates a deeper understanding of leaf metabolism in different kale types. Here we examined a curly leaved cultivar Half Tall and a lacinato type cultivar Black Magic under moderate growth light (130 µmol photons m-1s-1/22°C) and high light (800 µmol photons m-1s-1/26°C) conditions. These conditions induced genotype-dependent differences in nutritionally important metabolites, especially anthocyanins and glucosinolates (GSLs), in the kale cultivars...
April 17, 2024: Journal of Experimental Botany
https://read.qxmd.com/read/38630097/comparative-analysis-of-sipeimine-content-metabolome-and-chloroplast-genome-in-cultivated-and-wild-varieties-of-fritillaria-taipaiensis
#18
JOURNAL ARTICLE
Yue Xu, Cun Chen, Jin Cai, Ling Lin, Wei Song, Kexin Yang, Yiran Zhao, Cun Wen, Jiahong Wei, Zhibin Liu
BACKGROUND: The wild variety Fritillaria taipaiensis E. B (EB) is known for its superior therapeutic effects, but its limited production cannot meet the demands. As a result, the cultivated variety F. taipaiensis P. Y. Li (PY) has been widely grown. In this study, we conducted a comprehensive analysis comparing EB and PY in terms of external features, Sipeimine content, metabolome, and chloroplast genome to differentiate these two varieties. RESULTS: Our research revealed that the petals and pods of EB are green, while those of PY have purple markings...
April 17, 2024: Journal of the Science of Food and Agriculture
https://read.qxmd.com/read/38629563/-effects-of-modified-distillers-grains-biochar-on-cadmium-forms-in-purple-soil-and-cadmium-uptake-by-rice
#19
JOURNAL ARTICLE
Nai-Chuan Xiao, Zi-Fang Wang, Wen-Na Yang, Yong-Hong Xie, Wen-Cai Dai, Ming Gao
Biochar and modified biochar have been widely used as remediation materials in heavy metal-contaminated agricultural soils. In order to explore economical and effective materials for the remediation of cadmium (Cd)-contaminated acidic purple soil, distillers 'grains were converted into distillers' grains biochar (DGBC) and modified using nano-titanium dioxide (Nano-TiO2 ) to produce two types of modified DGBCs:TiO2 /DGBC and Fe-TiO2 /DGBC. A rice pot experiment was used to investigate the effects of different biochar types and application rates (1%, 3%, and 5%) on soil properties, nutrient content, Cd bioavailability, Cd forms, rice growth, and Cd accumulation...
May 8, 2024: Huan Jing Ke Xue= Huanjing Kexue
https://read.qxmd.com/read/38629562/-cadmium-phytoremediation-effect-of-sweet-sorghum-assisted-with-citric-acid-on-typical-parent-soil-in-southern-china
#20
JOURNAL ARTICLE
Meng-Yu Liu, Xu-Feng Luo, Jiao-Feng Gu, Xuan-Tao Yi, Hang Zhou, Peng Zeng, Bo-Han Liao
Sweet sorghum has a large biomass and strong cadmium (Cd) absorption capacity, which has the potential for phytoremediation of Cd-contaminated soil. In order to study the Cd phytoremediation effect of sweet sorghum assisted with citric acid on the typical parent materials in southern China, a field experiment was carried out in two typical parent material farmland areas (neutral purple mud field and jute sand mud field) with Cd pollution in Hunan Province. The results showed that:① Citric acid had no inhibitory effect on the growth of sweet sorghum...
May 8, 2024: Huan Jing Ke Xue= Huanjing Kexue
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