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Texture analysis

Margaret L Salisbury, David A Lynch, Edwin J R van Beek, Ella A Kazerooni, Junfeng Guo, Meng Xia, Susan Murray, Kevin J Anstrom, Eric Yow, Fernando J Martinez, Eric A Hoffman, Kevin R Flaherty
RATIONALE: Adaptive Multiple Features Method (AMFM) lung texture analysis software recognizes high-resolution computed tomography (HRCT) patterns. OBJECTIVES: We evaluated AMFM and visual quantification of HRCT patterns and their relationship with disease progression in Idiopathic Pulmonary Fibrosis. METHODS: IPF patients in a clinical trial of prednisone, azathioprine, and N-acetylcysteine underwent HRCT at study start and finish. Proportion of lung occupied by ground glass, ground glass-reticular (GGR), honeycombing, emphysema, and normal were measured by AMFM and 3 radiologists, documenting baseline disease extent and post-baseline change...
October 21, 2016: American Journal of Respiratory and Critical Care Medicine
Bruce Wen, Kirby R Campbell, Karissa Tilbury, Oleg Nadiarnykh, Molly A Brewer, Manish Patankar, Vikas Singh, Kevin W Eliceiri, Paul J Campagnola
Remodeling of the collagen architecture in the extracellular matrix (ECM) has been implicated in ovarian cancer. To quantify these alterations we implemented a form of 3D texture analysis to delineate the fibrillar morphology observed in 3D Second Harmonic Generation (SHG) microscopy image data of normal (1) and high risk (2) ovarian stroma, benign ovarian tumors (3), low grade (4) and high grade (5) serous tumors, and endometrioid tumors (6). We developed a tailored set of 3D filters which extract textural features in the 3D image sets to build (or learn) statistical models of each tissue class...
October 21, 2016: Scientific Reports
Sertan Kaya, Mustafa Bayraktar, Sinan Kockara, Mutlu Mete, Tansel Halic, Halle E Field, Henry K Wong
BACKGROUND: Automated skin lesion border examination and analysis techniques have become an important field of research for distinguishing malignant pigmented lesions from benign lesions. An abrupt pigment pattern cutoff at the periphery of a skin lesion is one of the most important dermoscopic features for detection of neoplastic behavior. In current clinical setting, the lesion is divided into a virtual pie with eight sections. Each section is examined by a dermatologist for abrupt cutoff and scored accordingly, which can be tedious and subjective...
October 6, 2016: BMC Bioinformatics
Erik J Oerter, Alexei Perelet, Eric Pardyjak, Gabriel Bowen
RATIONALE: The fast and accurate measurement of H and O stable isotope compositions (δ(2) H and δ(18) O values) of soil and sediment pore water remains an impediment to scaling-up the application of these isotopes in soil and vadose hydrology. Here we describe a method and its calibration to measuring soil and sediment pore water δ(2) H and δ(18) O values using a water vapor-permeable probe coupled to an Isotope Ratio Infrared Spectroscopy analyzer. METHODS: We compare the water vapor probe method with a vapor direct equilibration method, and vacuum extraction with liquid water analysis...
October 20, 2016: Rapid Communications in Mass Spectrometry: RCM
Aleksey B Smirnov, Serhii B Kryvyi, Sergii A Mulenko, Maria L Sadovnikova, Rada K Savkina, Nicolaie Stefan
Ultraviolet photons of KrF laser (248 nm) was used for the synthesis of nanometric films based on iron and chromium oxides (Fe2O3 - X (0 ≤ x ≤ 1) and Cr3 - X O3 - Y (0 ≤ x ≤ 2; 0 ≤ y ≤ 2)) with variable thickness, stoichiometry, and electrical properties. Film deposition was carried out on the silicon substrate Si < 100 > at the substrate's temperature T S = 293 K. X-ray diffraction and X-ray reflectometry analysis were used for the obtained structure characterization...
December 2016: Nanoscale Research Letters
N Fahrenfeld, A Pruden, M Widdowson
Methyl ethyl ketone (MEK) is a common groundwater contaminant often present with more toxic compounds of primary interest. Because of this, few studies have been performed to determine the effect of microbial community structure on MEK biodegradation rates in aquifer sediments. Here, microcosms were prepared with aquifer sediments containing MEK following a massive spill event and compared to laboratory-spiked sediments, with MEK biodegradation rates quantified under mixed aerobic/anaerobic conditions. Biodegradation was achieved in MEK-contaminated site sediment microcosms at about half of the solubility (356 mg/L) with largely Firmicutes population under iron-reducing conditions...
October 20, 2016: Biodegradation
Marie-Charlotte Desseroit, Florent Tixier, Wolfgang Andreas Weber, Barry Alan Siegel, Catherine Cheze Le Rest, Dimitris Visvikis, Mathieu Hatt
PURPOSE: The main purpose of this study was to assess the reliability of shape and heterogeneity features in both PET and low-dose CT components of PET/CT. A secondary objective was to investigate the impact of image quantization. MATERIAL AND METHODS: A HIPAA-compliant secondary analysis of deidentified prospectively acquired PET/CT test-retest datasets of 74 patients from multi-center Merck and ACRIN trials was performed. Metabolically active volumes were automatically delineated on PET with Fuzzy Locally Adaptive Bayesian (FLAB) algorithm...
October 20, 2016: Journal of Nuclear Medicine: Official Publication, Society of Nuclear Medicine
Hiroshi Isono, Shinnosuke Hirata, Tadashi Yamaguchi, Hiroyuki Hachiya
PURPOSE: Chronic liver disease requires careful follow-up during long-term treatment, and development of a quantitative diagnosis method for liver fibrosis based on an ultrasonic imaging system is highly desired. METHODS: Texture analysis using a co-occurrence matrix was applied to both clinical and simulated ultrasonic images of fibrotic livers. A sequence of matrices was generated for pixel-pair distance, r, and texture feature contrast was chosen to examine the response to r in combination with statistical analysis of echo amplitude distribution using a multi-Rayleigh model...
October 18, 2016: Journal of Medical Ultrasonics
Katie A Cychosz, Rémy Guillet-Nicolas, Javier García-Martínez, Matthias Thommes
This review focuses on important aspects of applying physisorption for the pore structural characterization of hierarchical materials such as mesoporous zeolites. During the last decades major advances in understanding the adsorption and phase behavior of fluids confined in ordered nanoporous materials have been made, which led to major progress in the physisorption characterization methodology (summarized in the 2015 IUPAC report on physisorption characterization). Here we discuss progress and challenges for the physisorption characterization of nanoporous solids exhibiting various levels of porosity from micro- to macropores...
October 19, 2016: Chemical Society Reviews
Martin Alfuth
The aim of this systematic review with meta-analysis was to investigate if using textured or other types of stimulating insoles improve gait characteristics and balance/postural control in patients with multiple sclerosis and Parkinson's disease. Primary outcomes for balance were the center of pressure (CoP) displacement and CoP velocity/sway rate. Primary outcomes for gait were the cadence, velocity, and step length. Standardized mean differences (SMD) were used to verify the efficacy of wearing the insoles on gait and balance outcome measures...
October 11, 2016: Gait & Posture
Kuan-Yin Ko, Chia-Ju Liu, Chi-Lun Ko, Ruoh-Fang Yen
PURPOSE: The aim of this study was to investigate whether the textural features of pretreatment F-FDG PET images can predict prognosis for nasal type extranodal natural killer/T-cell lymphoma (ENKTL). MATERIALS AND METHODS: A retrospective analysis of the pretreatment F-FDG PET images of the patients with newly diagnosed nasal type ENKTL from 2008 to 2013 was conducted. Progression-free survival (PFS) was the main outcome measure. The primary tumor was identified and then delineated using the 40% maximum standardized uptake value (SUVmax) thresholding method...
October 5, 2016: Clinical Nuclear Medicine
W Chumngoen, C F Chen, H Y Chen, F J Tan
1. This study aimed to evaluate the changes in physicochemical, textural and sensory characteristics of broiler (BR) and Taiwan native (TNC) chicken pectoralis muscle heated at temperatures of 50-95°C. 2. With increasing temperature, cooking loss, collagen solubility, shear force value and hardness of samples increased in both chicken breeds. Rapid decreases in protein solubility were observed when the meat was heated to 50°C and gradually decreased thereafter. 3. Meat from broilers and native chickens performed differently upon heating in certain characteristics...
October 17, 2016: British Poultry Science
Judith Schäfer, Anika Brett, Bernhard Trierweiler, Mirko Bunzel
Cell wall composition affects the texture of plant-based foods. In addition, the main components of plant cell walls are dietary fiber constituents and made responsible for potential physiological effects that are largely affected by the structural composition of the cell walls. Radish (Raphanus sativus L. var. sativus) is known to develop a woody and firm texture during maturation and ripening, most likely due to changes in the cell wall composition. To describe these changes chemically, radish was cultivated and harvested at different time points, followed by detailed chemical analysis of insoluble fiber polysaccharides and lignin...
October 15, 2016: Journal of Agricultural and Food Chemistry
T Janvier, R Jennane, A Valery, K Harrar, M Delplanque, C Lelong, D Loeuille, H Toumi, E Lespessailles
OBJECTIVES: To examine whether trabecular bone texture (TBT) parameters assessed on computed radiographs could predict knee osteoarthritis (OA) progression. METHODS: This study was performed using data from the Osteoarthritis Initiative. 1647 knees in 1124 patients had bilateral fixed flexion radiographs acquired 48 months apart. Images were semi-automatically segmented to extract a patchwork of regions of interest (ROI). A fractal texture analysis was performed using different methods...
October 11, 2016: Osteoarthritis and Cartilage
Kelly Brown, Charles Sims, Asli Odabasi, Linda Bartoshuk, Patrick Conner, Dennis Gray
The objective of this research was to investigate the acceptability of muscadine grape (Vitis rotundifolia) genotypes (cultivars and selections) and to correlate overall liking to other quality measurements to determine the main drivers of liking. Twenty-two genotypes grown at the Univ. of Georgia-Tifton Campus were evaluated. Four retail commercial grape genotypes (Vitis vinifera and "Concord") were also evaluated for comparison. Panelists familiar with muscadine grapes used the hedonic general labeled magnitude scale (HgLMS, -100 = strongest disliking of any kind ever experienced, +100 = strongest liking of any kind ever experienced) to rate overall liking and the liking of appearance, flavor, pulp texture, and skin texture...
October 14, 2016: Journal of Food Science
Ravi C Nirmal, Agnelo Furtado, Colin Wrigley, Robert J Henry
Puroindoline (Pina and Pinb) genes control grain texture or hardness in wheat. Wild-type/soft alleles lead to softer grain while a mutation in one or both of these genes results in a hard grain. Variation in hardness in genotypes with identical Pin alleles (wild-type or mutant) is known but the molecular basis of this is not known. We now report the identification of wheat genotypes with hard grain texture and wild-type/soft Pin alleles indicating that hardness in wheat may be controlled by factors other than mutations in the coding region of the Pin genes...
2016: PloS One
Pol Cirujeda, Yashin Dicente Cid, Henning Muller, Daniel Rubin, Todd A Aguilera, Billy W Loo, Maximilian Diehn, Xavier Binefa, Adrien Depeursinge
This paper proposes a novel imaging biomarker of lung cancer relapse from 3-D texture analysis of CT images. Three-dimensional morphological nodular tissue properties are described in terms of 3-D Riesz-wavelets. The responses of the latter are aggregated within nodular regions by means of feature covariances, which leverage rich intra- and inter- variations of the feature space dimensions. When compared to the classical use of the average for feature aggregation, feature covariances preserve spatial co-variations between features...
July 18, 2016: IEEE Transactions on Medical Imaging
Johannes Burge, Brian C McCann, Wilson S Geisler
Estimating three-dimensional (3D) surface orientation (slant and tilt) is an important first step toward estimating 3D shape. Here, we examine how three local image cues from the same location (disparity gradient, luminance gradient, and dominant texture orientation) should be combined to estimate 3D tilt in natural scenes. We collected a database of natural stereoscopic images with precisely co-registered range images that provide the ground-truth distance at each pixel location. We then analyzed the relationship between ground-truth tilt and image cue values...
October 1, 2016: Journal of Vision
Jorn Beukinga, Jan Binne Hulshoff, Lisanne van Dijk, Christina Muijs, Johannes Burgerhof, Gursah Kats-Ugurlu, Riemer Slart, Cornelis Slump, Véronique Mul, John Plukker
: Adequate prediction of tumor response to neoadjuvant chemoradiotherapy (nCRT) in esophageal cancer (EC) patients is important in a more personalized treatment. The current best clinical method to predict pathologic complete response is the maximal standardized uptake value (SUVmax) in (18)F-fluorodeoxyglucose positron emission tomography/computed tomography ((18)F-FDG PET/CT) imaging. To improve the prediction of response, we constructed a model to predict complete response to nCRT in EC based on pre-treatment clinical parameters and (18)F-FDG PET/CT derived textural features...
October 13, 2016: Journal of Nuclear Medicine: Official Publication, Society of Nuclear Medicine
Attila Forgacs, Hermann Pall Jonsson, Magnus Dahlbom, Freddie Daver, Matthew D DiFranco, Gabor Opposits, Aron K Krizsan, Ildiko Garai, Johannes Czernin, Jozsef Varga, Lajos Tron, Laszlo Balkay
Textural analysis might give new insights into the quantitative characterization of metabolically active tumors. More than thirty textural parameters have been investigated in former F18-FDG studies already. The purpose of the paper is to declare basic requirements as a selection strategy to identify the most appropriate heterogeneity parameters to measure textural features. Our predefined requirements were: a reliable heterogeneity parameter has to be volume independent, reproducible, and suitable for expressing quantitatively the degree of heterogeneity...
2016: PloS One
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