keyword
https://read.qxmd.com/read/38722918/lrk-1-lrrk2-and-ap-3-regulate-trafficking-of-synaptic-vesicle-precursors-through-active-zone-protein-syd-2-liprin-%C3%AE
#21
JOURNAL ARTICLE
Sravanthi S P Nadiminti, Shirley B Dixit, Neena Ratnakaran, Anushka Deb, Sneha Hegde, Sri Padma Priya Boyanapalli, Sierra Swords, Barth D Grant, Sandhya P Koushika
Synaptic vesicle proteins (SVps) are transported by the motor UNC-104/KIF1A. We show that SVps travel in heterogeneous carriers in C. elegans neuronal processes, with some SVp carriers co-transporting lysosomal proteins (SV-lysosomes). LRK-1/LRRK2 and the clathrin adaptor protein complex AP-3 play a critical role in the sorting of SVps and lysosomal proteins away from each other at the SV-lysosomal intermediate trafficking compartment. Both SVp carriers lacking lysosomal proteins and SV-lysosomes are dependent on the motor UNC-104/KIF1A for their transport...
May 2024: PLoS Genetics
https://read.qxmd.com/read/38722594/a-chromosome-scale-assembly-of-brassica-carinata-bbcc-accession-hc20-containing-resistance-to-multiple-pathogens-and-an-early-generation-assessment-of-introgressions-into-b-%C3%A2-juncea-aabb
#22
JOURNAL ARTICLE
Kumar Paritosh, Sivasubramanian Rajarammohan, Satish Kumar Yadava, Sarita Sharma, Rashmi Verma, Shikha Mathur, Arundhati Mukhopadhyay, Vibha Gupta, Akshay K Pradhan, Jagreet Kaur, Deepak Pental
Brassica carinata (BBCC) commonly referred to as Ethiopian mustard is a natural allotetraploid containing the genomes of Brassica nigra (BB) and Brassica oleracea (CC). It is an oilseed crop endemic to the northeastern regions of Africa. Although it is under limited cultivation, B. carinata is valuable as it is resistant/highly tolerant to most of the pathogens affecting widely cultivated Brassica species of the U's triangle. We report a chromosome-scale genome assembly of B. carinata accession HC20 using long-read Oxford Nanopore sequencing and Bionano optical maps...
May 9, 2024: Plant Journal
https://read.qxmd.com/read/38721601/integrated-transcriptome-and-metabolome-profiling-reveals-mechanisms-underlying-the-infection-of-cytospora-mali-in-jin-hong-branches
#23
JOURNAL ARTICLE
Jing Zhao, Yuan Guo, Zhengnan Li, Yajun Shi, Pingping Sun
INTRODUCTION: Valsa canker, caused by Cytospora mali , is a destructive disease in apple production. However, the mechanism by which apple defend against C. mali infection remains unclear. METHODS: In this study, the integrative transcriptional and metabolic analysis were used to investigate the responses of the 'Jin Hong' apple branches to the invasion of C. mali . RESULTS AND DISCUSSION: Results showed that the differentially expressed genes were mainly enriched in the pathways of carbon metabolism, photosynthesis-antenna proteins, and biosynthesis of amino acids pathways...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38721418/crystal-structure-and-hirshfeld-surface-analysis-of-1-h-imidazole-%C3%AE%C2%BA-n-3-4-methyl-2-2-oxido-5-2-phenyl-diazen-1-yl-phen-yl-methyl-idene-amino-penta-noate-%C3%AE%C2%BA-3-o-n-o-copper-ii
#24
JOURNAL ARTICLE
Ai Kaneda, Soma Suzuki, Daisuke Nakane, Yukiyasu Kashiwagi, Takashiro Akitsu
The title copper(II) complex, [Cu(C18 H19 N3 O3 )(C3 H4 N2 )], consists of a tridentate ligand synthesized from l-leucine and azo-benzene-salicyl-aldehyde. One imidazole mol-ecule is additionally coordinated to the copper(II) ion in the equatorial plane. The crystal structure features N-H⋯O hydrogen bonds. A Hirshfeld surface analysis indicates that the most important contributions to the packing are from H⋯H (52.0%) and C⋯H/H⋯C (17.9%) contacts.
April 1, 2024: Acta Crystallographica. Section E, Crystallographic Communications
https://read.qxmd.com/read/38720699/microcystin-leucine-arginine-induces-the-proliferation-of-cholangiocytes-and-cholangiocarcinoma-cells-through-the-activation-of-the-wnt-%C3%AE-catenin-signaling-pathway
#25
JOURNAL ARTICLE
Suppakrit Kongsintaweesuk, Sirinapha Klungsaeng, Kitti Intuyod, Anchalee Techasen, Chawalit Pairojkul, Vor Luvira, Somchai Pinlaor, Porntip Pinlaor
BACKGROUND: Microcystin-leucine arginine (MC-LR) is a cyanobacterial hepatotoxic toxin found in water sources worldwide, including in northeastern Thailand, where opisthorchiasis-associated cholangiocarcinoma (CCA) is most prevalent. MC-LR is a potential carcinogen; however, its involvement in liver fluke-associated CCA remains ambiguous. Here, we aimed to evaluate the effect of MC-LR on the progression of CCA via the Wnt/β-catenin pathway in vitro . METHODS: Cell division, migration, cell cycle transition, and MC-LR transporter expression were evaluated in vitro through MTT assay, wound healing assay, flow cytometry, and immunofluorescence staining, respectively...
May 15, 2024: Heliyon
https://read.qxmd.com/read/38719954/vascular-smooth-muscle-specific-lrrc8a-knockout-ameliorates-angiotensin-ii-induced-cerebrovascular-remodeling-by-inhibiting-the-wnk1-foxo3a-mmp-signaling-pathway
#26
JOURNAL ARTICLE
Feng-Ting Lu, Cheng-Cui Huang, Wen-Yi Lai, Gui-Yong Yang, Zhu-Jun Liang, Zi-Yi Zhang, Tanvi Chokshi, Kai-Min Guo, Yu-Bo Tang, Yuan Chen, Zhong-Han Yang, Si-Jia Liang, Rui-Ping Pang, Jia-Guo Zhou, Yong-Yuan Guan, Xiao-Fei Lv, Ming-Ming Ma
Hypertensive cerebrovascular remodeling involves the enlargement of vascular smooth muscle cells (VSMCs), which activates volume-regulated Cl- channels (VRCCs). The leucine-rich repeat-containing family 8 A (LRRC8A) has been shown to be the molecular identity of VRCCs. However, its role in vascular remodeling during hypertension is unclear. In this study, we used vascular smooth muscle-specific LRRC8A knockout (CKO) mice and an angiotensin II (Ang II)-induced hypertension model. The results showed that cerebrovascular remodeling during hypertension was ameliorated in CKO mice, and extracellular matrix (ECM) deposition was reduced...
May 8, 2024: Acta Pharmacologica Sinica
https://read.qxmd.com/read/38719200/unexpected-transformations-during-pyrroloiminoquinone-biosynthesis
#27
JOURNAL ARTICLE
Josseline Ramos Figueroa, Lingyang Zhu, Wilfred A van der Donk
Pyrroloiminoquinone-containing natural products have long been known for their biological activities. They are derived from tryptophan, but their biosynthetic pathways have remained elusive. Studies on the biosynthetic gene cluster (BGC) that produces the ammosamides revealed that the first step is attachment of Trp to the C-terminus of a scaffold peptide in an ATP- and tRNA-dependent manner catalyzed by a PEptide Aminoacyl-tRNA Ligase (PEARL). The indole of Trp is then oxidized to a hydroxyquinone. We previously proposed a chemically plausible and streamlined pathway for converting this intermediate to the ammosamides using additional enzymes encoded in the BGC...
May 8, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38719150/ormdl-mislocalization-by-impaired-autophagy-in-niemann-pick-type-c-disease-leads-to-increased-de-novo-sphingolipid-biosynthesis
#28
JOURNAL ARTICLE
Ryan D R Brown, Usha Mahawar, Binks W Wattenberg, Sarah Spiegel
Niemann-Pick type C1 (NPC1) disease is rare neurodegenerative cholesterol and sphingolipid storage disorder primarily due to mutations in the cholesterol-trafficking protein NPC1. In addition to catabolic-derived sphingolipids, NPC1 dysfunction also leads to an increase in de novo sphingolipid biosynthesis, yet little is known of the cellular mechanism involved. Although deletion of NPC1 or inhibition of the NPC1 sterol binding domain enhanced de novo sphingolipid biosynthesis, surprisingly levels of the ORMDLs, the regulatory subunits of serine palmitoyltransferase (SPT), the rate-limiting step in sphingolipid biosynthesis, were also greatly increased...
May 6, 2024: Journal of Lipid Research
https://read.qxmd.com/read/38718891/predicting-the-potential-mechanism-of-radix-chimonanthi-pracecocis-in-treating-osteoarthritis-by-network-pharmacology-analysis-combined-with-experimental-validation
#29
JOURNAL ARTICLE
Xudong Zhang, Dongwen Wu, Lukai Zhang, Hongyan Zhang, Liping Yang, Li Wei, Huimin Mei, Liying Luo, Zong Jiang, Cong Huang
ETHNOPHARMACOLOGICAL RELEVANCE: Radix Chimonanthi Pracecocis(RCP), also known as Tiekuaizi, widely used by the Miao community in Guizhou, exhibits diverse biological activities and holds promise for the treatment of osteoarthritis (OA). However, there is a lack of contemporary pharmacological research in this area. AIMS OF THE STUDY: This study aims to explore the potential of targets and mechanisms of RCP in the treatment of OA. MATERIALS AND METHODS: The chemical components of RCP were identified using UPLC-MS/MS, and active components were determined based on the Lipinski rule...
May 6, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38718314/lgr6-frameshift-variant-abrogates-receptor-expression-on-select-leukocyte-subsets-and-associates-with-viral-infections
#30
JOURNAL ARTICLE
Esteban Alberto Gomez Cifuentes, Roberta De Matteis, Palita Udomjarumanee, Genes And Health Queen Mary University Of London, Patricia B Munroe, Jesmond Dalli
The leucine-rich repeat-containing G-protein-coupled receptor 6 (LGR6) was recently identified as the cognate receptor for the pro-resolving mediator Maresin (MaR)1. To address the biological role of LGR6 in humans, we investigated the functional impact of a genetic variant in the gene encoding for LGR6, which is predicted to lead to a frameshift mutation in one of the receptor isoforms, on both receptor expression and immune cell responses. In neutrophils, monocytes, and NK cells from volunteers homozygous for this variant, we found a significant downregulation in the expression of LGR6 when compared with controls without the variant...
May 8, 2024: Blood
https://read.qxmd.com/read/38717590/evaluation-of-lauric-acid-enhancement-of-black-soldier-fly-larvae-from-coconut
#31
JOURNAL ARTICLE
Delbert M Gatlin, Pedro L Pucci Figueiredo De Carvalho, Casey Flint, Chelsea Miranda, Jeffery K Tomberlin
The current study evaluated the potential enhancement of lauric acid (LA) in black soldier fly, Hermetia illucens, (L.) (Diptera: Stratiomyidae) larvae (BSFL), a source of this short-chain fatty acid which has antimicrobial and immunostimulatory properties. Replicate groups of BSFL were reared on either the coconut or Gainesville diet for 7 days. After the rearing period, BSFL were harvested, purged, dried, and subjected to proximate, fatty acid and amino acid compositions, and pepsin digestibility analyses...
May 8, 2024: Journal of Economic Entomology
https://read.qxmd.com/read/38717571/backbone-and-methyl-side-chain-resonance-assignments-of-the-single-chain-fab-fragment-of-trastuzumab
#32
JOURNAL ARTICLE
Donald Gagné, James M Aramini, Yves Aubin
Trastuzumab is a therapeutic monoclonal antibody developed to target human epidermal growth factor receptor 2 (HER2) present at higher levels in early cancers. Here we report the near complete resonance assignment of trastuzumab-scFab fragment backbone and the methyl groups of isoleucine, leucine and valine residues, as well as their stereo-assignments. The antibody fragment was produced using a single chain approach in Escherichia coli.
May 8, 2024: Biomolecular NMR Assignments
https://read.qxmd.com/read/38715825/comparative-metabolomics-of-mcf-7-and-mcf-7-tamr-identifies-potential-metabolic-pathways-in-tamoxifen-resistant-breast-cancer-cells
#33
JOURNAL ARTICLE
Alok Mishra, Anubhav Srivastava, Anshuman Srivastava, Lokendra Kumar Sharma, Anand Kumar Mishra, Ashutosh Shrivastava
OBJECTIVES: Breast cancer is the most common cancer and the leading cause of cancer-related death among women. An Estrogen Receptor (ER) antagonist called tamoxifen is used as an adjuvant therapy for ER-positive breast cancers. Approximately 40% of patients develop tamoxifen resistance (TAMR) while receiving treatment. Cancer cells can rewire their metabolism to develop resistant phenotypes, and their metabolic state determines how receptive they are to chemotherapy. METHODS: Metabolite extraction from human MCF-7 and MCF-7/TAMR cells was done using the methanol-methanol-water extraction method...
2024: American Journal of Translational Research
https://read.qxmd.com/read/38714733/e4bp4-in-macrophages-induces-an-anti-inflammatory-phenotype-that-ameliorates-the-severity-of-colitis
#34
JOURNAL ARTICLE
Yasuko Kajimura, Akihiko Taguchi, Yuko Nagao, Kaoru Yamamoto, Konosuke Masuda, Kensuke Shibata, Yoichi Asaoka, Makoto Furutani-Seiki, Yukio Tanizawa, Yasuharu Ohta
Macrophages are versatile cells of the innate immune system that work by altering their pro- or anti-inflammatory features. Their dysregulation leads to inflammatory disorders such as inflammatory bowel disease. We show that macrophage-specific upregulation of the clock output gene and transcription factor E4BP4 reduces the severity of colitis in mice. RNA-sequencing and single-cell analyses of macrophages revealed that increased expression of E4BP4 leads to an overall increase in expression of anti-inflammatory genes including Il4ra with a concomitant reduction in pro-inflammatory gene expression...
May 7, 2024: Communications Biology
https://read.qxmd.com/read/38713249/organization-of-enkephalinergic-neuronal-system-in-the-central-nervous-system-of-the-gecko-hemidactylus-frenatus
#35
JOURNAL ARTICLE
Ananya Ganeyan, C B Ganesh
Enkephalins are endogenous opioid pentapeptides that play a role in neurotransmission and pain modulation in vertebrates. However, the distribution pattern of enkephalinergic neurons in the brains of reptiles has been understudied. This study reports the organization of the methionine-enkephalin (M-ENK) and leucine-enkephalin (L-ENK) neuronal systems in the central nervous system of the gecko Hemidactylus frenatus using an immunofluorescence labeling method. Although M-ENK and L-ENK-immunoreactive (ir) fibers extended throughout the pallial and subpallial subdivisions, including the olfactory bulbs, M-ENK and L-ENK-ir cells were found only in the dorsal septal nucleus...
May 7, 2024: Brain Structure & Function
https://read.qxmd.com/read/38712855/antiviral-activity-of-vigna-radiata-extract-against-feline-coronavirus-in-vitro
#36
JOURNAL ARTICLE
Ai-Ai Chou, Chung-Hui Lin, Yen-Chen Chang, Hui-Wen Chang, Yi-Chen Lin, Chia-Chen Pi, Yao-Ming Kan, Hao-Fen Chuang, Hui-Wen Chen
Feline infectious peritonitis (FIP) is a fatal illness caused by a mutated feline coronavirus (FCoV). This disease is characterized by its complexity, resulting from systemic infection, antibody-dependent enhancement (ADE), and challenges in accessing effective therapeutics. Extract derived from Vigna radiata (L.) R. Wilczek (VRE) exhibits various pharmacological effects, including antiviral activity. This study aimed to investigate the antiviral potential of VRE against FCoV, addressing the urgent need to advance the treatment of FIP...
December 2024: Veterinary Quarterly
https://read.qxmd.com/read/38712453/nutritional-strategies-for-muscle-atrophy-current-evidence-and-underlying-mechanisms
#37
REVIEW
Yuntian Shen, Chen Zhang, Chaolun Dai, Yijie Zhang, Kexin Wang, Zihui Gao, Xin Chen, Xiaoming Yang, Hualin Sun, Xinlei Yao, Lingchi Xu, Hua Liu
Skeletal muscle can undergo detrimental changes in various diseases, leading to muscle dysfunction and atrophy, thus severely affecting people's lives. Along with exercise, there is a growing interest in the potential of nutritional support against muscle atrophy. This review provides a brief overview of the molecular mechanisms driving skeletal muscle atrophy and summarizes recent advances in nutritional interventions for preventing and treating muscle atrophy. The nutritional supplements include amino acids and their derivatives (such as leucine, β-hydroxy, β-methylbutyrate, and creatine), various antioxidant supplements (like Coenzyme Q10 and mitoquinone, resveratrol, curcumin, quercetin, Omega 3 fatty acids), minerals (such as magnesium and selenium), and vitamins (such as vitamin B, vitamin C, vitamin D, and vitamin E), as well as probiotics and prebiotics (like Lactobacillus, Bifidobacterium, and 1-kestose)...
May 7, 2024: Molecular Nutrition & Food Research
https://read.qxmd.com/read/38712361/efficacy-of-serum-leucine-rich-alpha-2-glycoprotein-in-predicting-findings-of-crohn-s-disease-small-bowel-lesion-in-capsule-endoscopy
#38
JOURNAL ARTICLE
Teppei Omori, Miki Koroku, Shun Murasugi, Ayumi Ito, Maria Yonezawa, Shinichi Nakamura, Katsutoshi Tokushige
BACKGROUND/AIMS: Small bowel capsule endoscopy (SBCE) is an evaluation method for small bowel (SB) lesions in Crohn's disease (CD). However, the relationship between SBCE findings and the serological biomarker leucine-rich alpha-2 glycoprotein (LRG) remains unclear. We aimed to establish appropriate cutoff values of LRG to predict the presence of SB lesions in CD through SBCE. METHODS: Patients with CD with SB lesions who had undergone SBCE and LRG measurements 1 month before and after the SBCE were included...
May 7, 2024: Intestinal Research
https://read.qxmd.com/read/38712276/novel-inhibitors-of-acute-axonal-dlk-palmitoylation-are-neuroprotective-and-avoid-the-deleterious-side-effects-of-cell-wide-dlk-inhibition
#39
Xiaotian Zhang, Heykyeong Jeong, Jingwen Niu, Sabrina M Holland, Brittany N Rotanz, John Gordon, Margret B Einarson, Wayne E Childers, Gareth M Thomas
Dual leucine-zipper kinase (DLK) drives acute and chronic forms of neurodegeneration, suggesting that inhibiting DLK signaling could ameliorate diverse neuropathological conditions. However, direct inhibition of DLK's kinase domain in human patients and conditional knockout of DLK in mice both cause unintended side effects, including elevated plasma neurofilament levels, indicative of neuronal cytoskeletal disruption. Indeed, we found that a DLK kinase domain inhibitor acutely disrupted the axonal cytoskeleton and caused vesicle aggregation in cultured dorsal root ganglion (DRG) neurons, further cautioning against this therapeutic strategy...
April 24, 2024: bioRxiv
https://read.qxmd.com/read/38711861/unravelling-genetic-architecture-of-circulatory-amino-acid-levels-and-their-effect-on-risk-of-complex-disorders
#40
JOURNAL ARTICLE
Leila Abar, Verena Zuber, Georg W Otto, Ioanna Tzoulaki, Abbas Dehghan
Variations in serum amino acid levels are linked to a multitude of complex disorders. We report the largest genome-wide association study (GWAS) on nine serum amino acids in the UK Biobank participants (117 944, European descent). We identified 34 genomic loci for circulatory levels of alanine, 48 loci for glutamine, 44 loci for glycine, 16 loci for histidine, 11 loci for isoleucine, 19 loci for leucine, 9 loci for phenylalanine, 32 loci for tyrosine and 20 loci for valine. Our gene-based analysis mapped 46-293 genes associated with serum amino acids, including MIP ,  GLS2 , SLC  gene family, GCKR , LMO1 , CPS1  and COBLL1 ...
June 2024: NAR genomics and bioinformatics
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