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Tagging and capture

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https://www.readbyqxmd.com/read/28208247/quantum-dots-labeling-strategy-for-counting-and-visualization-of-hepg2-cells
#1
Bin Yang, Beibei Chen, Man He, Bin Hu
We report a sensitive, selective, simple, and reliable magnetic immunoassay protocol for detection and imaging of HepG2 cells. After being captured by Cs-doped multicore magnetic nanoparticles (MMNPs), HepG2 cells were labeled by CdSe/ZnS quantum dots (QDs), which could be visualized by fluorescence imaging using the photoluminescence property of QDs, and subsequently, they can be counted by inductively coupled plasma mass spectrometry (ICP-MS) with Cd/Cs as elemental tag. Because of the superior photoluminescence properties and the large quantities of detectable Cd atoms contained in the QDs core, QDs play a dual function role in this assay, making the method easier and more comprehensive than other similar approaches...
February 7, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/28193857/mass-spectrometry-based-cross-linking-study-shows-that-the-psb28-protein-binds-to-cytochrome-b559-in-photosystem-ii
#2
Daniel A Weisz, Haijun Liu, Hao Zhang, Sundarapandian Thangapandian, Emad Tajkhorshid, Michael L Gross, Himadri B Pakrasi
Photosystem II (PSII), a large pigment protein complex, undergoes rapid turnover under natural conditions. During assembly of PSII, oxidative damage to vulnerable assembly intermediate complexes must be prevented. Psb28, the only cytoplasmic extrinsic protein in PSII, protects the RC47 assembly intermediate of PSII and assists its efficient conversion into functional PSII. Its role is particularly important under stress conditions when PSII damage occurs frequently. Psb28 is not found, however, in any PSII crystal structure, and its structural location has remained unknown...
February 13, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28187301/the-preparation-of-dual-functional-hybrid-nanoflower-and-its-application-in-the-ultrasensitive-detection-of-disease-related-biomarker
#3
Yucheng Liu, Jinyang Chen, Mingyuan Du, Xinxin Wang, Xinghu Ji, Zhike He
In this work, dual-functional streptavidin (SA)-horseradish peroxidase (HRP) hybrid nanoflowers, integrating the functions of biological recognition and signal amplification, were prepared through facile one-pot green synthesis method. The prepared SA-HRP-Cu3(PO4)2 hybrid nanoflowers loaded abundant HRP and simultaneously exhibited enhanced catalytic activity, stability, and durability compared with free enzyme, which fits greatly well with the requirement of signal tag for bioassay. Besides, due to the general SA-biotin linking interaction, the SA-HRP-Cu3(PO4)2 hybrid nanoflowers possess universal capture ability to the biotinylated antibody...
February 4, 2017: Biosensors & Bioelectronics
https://www.readbyqxmd.com/read/28174098/effects-of-organophosphates-on-the-regulation-of-mesenchymal-stem-cell-proliferation-and-differentiation-mscs-and-organophosphates
#4
Amber M Prugh, Stephanie D Cole, Trevor Glaros, Daniel J Angelini
Mesenchymal stem cells (MSCs) are multipotent cells located within various adult tissues. Recent literature has reported that human bone marrow-derived MSCs express active acetylcholinesterase (AChE) and that disruption of AChE activity by organophosphate (OP) chemicals decreases the ability of MSCs to differentiate into osteoblasts. The potential role of AChE in regulating MSC proliferation and differentiation is currently unknown. In the present study, we demonstrate that MSCs exposed to OPs have both decreased AChE activity and abundance...
February 4, 2017: Chemico-biological Interactions
https://www.readbyqxmd.com/read/28155874/itraq-based-quantitative-proteomic-analysis-of-the-global-response-to-17%C3%AE-estradiol-in-estrogen-degradation-strain-pseudomonas-putida-sjte-1
#5
Jing Xu, Lei Zhang, Jingli Hou, Xiuli Wang, Huan Liu, Daning Zheng, Rubing Liang
Microorganism degradation is efficient to remove the steroid hormones like 17β-estradiol (E2); but their degradation mechanism and metabolic network to these chemicals are still not very clear. Here the global responses of the estrogen-degradation strain Pseudomonas putida SJTE-1 to 17β-estradiol and glucose were analyzed and compared using the iTRAQ (isobaric tags for relative and absolute quantization) strategy combined with LC-MS/MS (liquid chromatography-tandem mass spectrometry). 78 proteins were identified with significant changes in expression; 45 proteins and 33 proteins were up-regulated and down-regulated, respectively...
February 3, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28152598/immuno-affinity-capture-followed-by-tmpp-n-terminus-tagging-to-study-catabolism-of-therapeutic-proteins
#6
Majlinda Kullolli, Dan A Rock, Ji Ma
Characterization of in vitro and in vivo catabolism of therapeutic proteins has increasingly become an integral part of discovery and development process for novel proteins. Unambiguous and efficient identification of catabolites can not only facilitate accurate understanding of pharmacokinetic profiles of drug candidates, but also enables follow up protein engineering to generate more catabolically stable molecules with improved properties (pharmacokinetics and pharmacodynamics). Immunoaffinity capture (IC) followed by top-down intact protein analysis using either matrix-assisted laser desorption/ionization or electrospray ionization mass spectrometry analysis have been the primary methods of choice for catabolite identification...
February 3, 2017: Journal of Proteome Research
https://www.readbyqxmd.com/read/28133395/linking-loggerhead-locations-using-multiple-methods-to-determine-the-origin-of-sea-turtles-in-feeding-grounds
#7
ALan F Rees, Carlos Carreras, Annette C Broderick, Dimitris Margaritoulis, Thomas B Stringell, Brendan J Godley
Many marine megavertebrate taxa, including sea turtles, disperse widely from their hatching or birthing locations but display natal homing as adults. We used flipper tagging, satellite tracking and genetics to identify the origin of loggerhead turtles living in Amvrakikos Gulf, Greece. This location has been identified as hosting regionally important numbers of large-juvenile to adult sized turtles that display long-term residency and/or association to the area, and also presents a male biased sex ratio for adults...
2017: Marine Biology
https://www.readbyqxmd.com/read/28122454/two-complementary-approaches-for-the-controlled-release-of-biomolecules-immobilized-via-coiled-coil-interactions-peptide-core-mutations-and-multivalent-presentation
#8
Frederic Murschel, Charles Fortier, Mario Jolicoeur, Robert S Hodges, Gregory De Crescenzo
We have developed a heterodimeric coiled-coil system based on two complementary peptides, namely (EVSALEK)5 and (KVSALKE)5, or E and K, for the attachment of E-tagged biomolecules onto K-decorated biomaterials. We here explore two approaches to control the strength and the stability of the E/K coiled-coil complex, and thus its potential for the controlled release of biomolecules. Those are Leucine-to-Alanine mutations in the K peptide (4 peptides with 0 to 3 mutations) and multivalent presentation of the E peptide (6 bio-objects from monomeric to dimeric and n-meric)...
January 25, 2017: Biomacromolecules
https://www.readbyqxmd.com/read/28111522/towards-new-sources-of-resistance-to-the-currant-lettuce-aphid-nasonovia-ribisnigri
#9
Peter G Walley, Gemma Hough, Jonathan D Moore, John Carder, Marian Elliott, Andrew Mead, Julie Jones, Graham Teakle, Guy Barker, Vicky Buchanan-Wollaston, Paul Hand, David Pink, Rosemary Collier
Domesticated lettuce varieties encompass much morphological variation across a range of crop type groups, with large collections of cultivars and landrace accessions maintained in genebanks. Additional variation not captured during domestication, present in ancestral wild relatives, represents a potentially rich source of alleles that can deliver to sustainable crop production. However, these large collections are difficult and costly to screen for many agronomically important traits. In this paper, we describe the generation of a diversity collection of 96 lettuce and wild species accessions that are amenable to routine phenotypic analysis and their genotypic characterization with a panel of 682 newly developed expressed sequence tag (EST)-linked KASP™ single nucleotide polymorphism (SNP) markers that are anchored to the draft Lactuca sativa genome assembly...
2017: Molecular Breeding: New Strategies in Plant Improvement
https://www.readbyqxmd.com/read/28103428/aqueous-biphasic-systems-for-the-synthesis-of-formates-via-catalytic-co2-hydrogenation-integrated-reaction-and-catalyst-separation-for-co2-scrubbing-solutions
#10
Martin Scott, Beatriz Blas Molinos, Christian Westhues, Giancarlo Franciò, Walter Leitner
Aqueous biphasic systems were investigated for the production of formate-amine-adducts via metal-catalyzed CO2-hydrogenation. Different hydrophobic organic solvents and ionic liquids could be employed as the stationary phase for cis-Ru(dppm)2Cl2 as prototypical catalyst without any modification or tagging of the complex. The solvent pair methyl-isobutylcarbinol (MIBC) and water led to the most practical and productive system and repetitive use of the catalyst phase was demonstrated achieving high endurance with a total TON 150...
January 19, 2017: ChemSusChem
https://www.readbyqxmd.com/read/28100911/variants-on-chromosome-4q21-near-pkd2-and-siblings-are-associated-with-dental-caries
#11
Scott Eckert, Eleanor Feingold, Margaret Cooper, Michael M Vanyukov, Brion S Maher, Rebecca L Slayton, Marcia C Willing, Steven E Reis, Daniel W McNeil, Richard J Crout, Robert J Weyant, Steven M Levy, Alexandre R Vieira, Mary L Marazita, John R Shaffer
A recent genome-wide association study (GWAS) for dental caries nominated the chromosomal region 4q21 near ABCG2, PKD2 and the SIBLING (small integrin-binding ligand N-linked glycoprotein) gene family. In this investigation, we followed up and fine-mapped this region using a tag-SNP (single-nucleotide polymorphism) approach in 13 age- and race-stratified samples from 6 independent studies (N=4089). Participants were assessed for dental caries via intraoral examination and 49 tag-SNPs were genotyped capturing much of the variation in the 4q21 locus...
January 19, 2017: Journal of Human Genetics
https://www.readbyqxmd.com/read/28093127/magnetic-beads-based-dna-hybridization-chain-reaction-amplification-and-dnazyme-recognition-for-colorimetric-detection-of-uranyl-ion-in-seafood
#12
Hongyan Zhang, Xian Cheng, Lian Chen, Fan Mo, LiangJun Xu, FengFu Fu
A novel colorimetric biosensor, which employs DNAzyme-functionalized magnetic beads (MBs) as recognition probe, enzyme-assisted catalytic oxidation of TMB (3,3',5,5'-tetramethylbenzidine sulfate) as signal and DNA hybridization chain reaction as amplification strategy, has been developed for detecting trace uranyl ion (UO2(2+)) in seafood and aqueous environment with high sensitivity and specificity. We demonstrated that UO2(2+) can specifically cleave DNAzyme immobilized on MBs surface to release a short single-strand DNA (primer), and the released primer trigger DNA hybridization chain reaction to form a long one dimensional DNA concatamer on the MBs surface...
March 1, 2017: Analytica Chimica Acta
https://www.readbyqxmd.com/read/28079282/troubling-issues-at-the-frontier-of-animal-tracking-for-conservation-and-management
#13
Steven J Cooke, Vivian M Nguyen, Steven T Kessel, Nigel E Hussey, Nathan Young, Adam T Ford
Developments in electronic tagging and tracking, including biotelemetry and biologging, have provided unprecedented insight into the ecology of wild animals (Cooke et al. 2004) and revealed hidden movement patterns, habitat associations, animal-environment interactions, and mortality rates for even the most cryptic of species (Hussey et al. 2015; Kays et al. 2015). Natural history, ecology (including movement ecology), conservation, and resource management have all benefitted from the application of this technology...
January 12, 2017: Conservation Biology: the Journal of the Society for Conservation Biology
https://www.readbyqxmd.com/read/28069507/a-highly-versatile-adaptor-protein-for-the-tethering-of-growth-factors-to-gelatin-based-biomaterials
#14
Cyril Addi, Frédéric Murschel, Benoît Liberelle, Nesrine Riahi, Gregory De Crescenzo
: In the field of tissue engineering, the tethering of growth factors to tissue scaffolds in an oriented manner can enhance their activity and increase their half-life. We chose to investigate the capture of the basic Fibroblast Growth Factor (bFGF) and the Epidermal Growth Factor (EGF) on a gelatin layer, as a model for the functionalization of collagen-based biomaterials. Our strategy relies on the use of two high affinity interactions, that is, the one between two distinct coil peptides as well as the one occurring between a collagen-binding domain (CBD) and gelatin...
January 6, 2017: Acta Biomaterialia
https://www.readbyqxmd.com/read/28065806/-tagging-along-memories-in-aging-synaptic-tagging-and-capture-mechanisms-in-the-aged-hippocampus
#15
REVIEW
Mahesh Shivarama Shetty, Sreedharan Sajikumar
Aging is accompanied by a general decline in the physiological functions of the body with the deteriorating organ systems. Brain is no exception to this and deficits in cognitive functions are quite common in advanced aging. Though a variety of age-related alterations are observed in the structure and function throughout the brain, certain regions show selective vulnerability. Medial temporal lobe, especially the hippocampus, is one such preferentially vulnerable region and is a crucial structure involved in the learning and long-term memory functions...
January 5, 2017: Ageing Research Reviews
https://www.readbyqxmd.com/read/28049710/accuracy-of-genomic-prediction-in-synthetic-populations-depending-on-the-number-of-parents-relatedness-and-ancestral-linkage-disequilibrium
#16
Pascal Schopp, Dominik Müller, Frank Technow, Albrecht E Melchinger
Synthetics play an important role in quantitative genetic research and plant breeding, but few studies have investigated the application of genomic prediction (GP) to these populations. Synthetics are generated by intermating a small number of parents ([Formula: see text] and thereby possess unique genetic properties, which make them especially suited for systematic investigations of factors contributing to the accuracy of GP. We generated synthetics in silico from [Formula: see text]2 to 32 maize (Zea mays L...
January 2017: Genetics
https://www.readbyqxmd.com/read/28036085/rfid-ownership-transfer-with-positive-secrecy-capacity-channels
#17
Jorge Munilla, Mike Burmester, Alberto Peinado, Guomin Yang, Willy Susilo
RFID ownership transfer protocols (OTPs) transfer tag ownership rights. Recently, there has been considerable interest in such protocols; however, guaranteeing privacy for symmetric-key settings without trusted third parties (TTPs) is a challenge still unresolved. In this paper, we address this issue and show that it can be solved by using channels with positive secrecy capacity. We implement these channels with noisy tags and provide practical values, thus proving that perfect secrecy is theoretically possible...
December 29, 2016: Sensors
https://www.readbyqxmd.com/read/28003065/easy-detection-of-multiple-alexandrium-species-using-dna-chromatography-chip
#18
Satoshi Nagai, Shigehiko Miyamoto, Keita Ino, Seisuke Tajimi, Hiromi Nishi, Jun Tomono
In this study, the Kaneka DNA chromatography chip (KDCC) for the Alexandrium species was successfully developed for simultaneous detection of five Alexandrium species. This method utilizes a DNA-DNA hybridization technology. In the PCR process, specifically designed tagged-primers are used, i.e. a forward primer consisting of a tag domain, which can conjugate with gold nanocolloids on the chip, and a primer domain, which can anneal/amplify the target sequence. However, the reverse primer consists of a tag domain, which can hybridize to the solid-phased capture probe on the chip, and a primer domain, which can anneal/amplify the target sequence...
January 2016: Harmful Algae
https://www.readbyqxmd.com/read/28002485/a-combinatory-antibody-antigen-microarray-assay-for-high-content-screening-of-single-chain-fragment-variable-clones-from-recombinant-libraries
#19
Nina Persson, Bo Jansson, Nicolai Stuhr-Hansen, András Kovács, Charlotte Welinder, Lena Danielsson, Ola Blixt
We have developed a combinatory antibody-antigen microarray for direct screening of multiple single-chain fragment variable (scFv) clones with no need for pre-purification or enrichment before screening. The straightforward workflow allows for early selection of binders to predefined peptide and glycopeptide targets. A capture antibody is contact printed on microarray slides, side by side with the antigens of interest. A large number of scFv clones, in supernatants, are printed on top of the capture antibody and the antigen in a "spot-on-spot" print...
2016: PloS One
https://www.readbyqxmd.com/read/28001318/carbon-dioxide-capture-adsorbents-chemistry-and-methods
#20
Hasmukh A Patel, Jeehye Byun, Cafer T Yavuz
Excess carbon dioxide (CO2) emissions and the inevitable consequences continuing to stimulate hard debate and awareness in both academic and public spaces, despite the clutter on understanding what really is needed to capture and store the unwanted CO2. Capture is the most costly, nearly 70 % of the price tag on the entire carbon capture and storage (CCS) operation. In this tutorial review, we describe and evaluate CO2 capture science and technology based on adsorbents in the context of chemistry and methods, after briefly introducing current status of CO2 emissions...
December 21, 2016: ChemSusChem
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