keyword
https://read.qxmd.com/read/38495992/investigation-of-chain-length-selection-by-the-tenellin-iterative-highly-reducing-polyketide-synthase
#1
JOURNAL ARTICLE
Katharina Schmidt, Russell J Cox
The programming of widely distributed iterative fungal hr-PKS is mysterious, yet it is central for generating polyketide natural product diversity by controlling the chain length, β-processing level and methylation patterns of fungal polyketides. For the iterative hr-PKS TENS, responsible for producing the pentaketide-tyrosine hybrid pretenellin A 1, the chain length programming is known to be determined by the KR domain. Structure prediction of the KR domain enabled the identification of a relevant substrate binding helix, which was the focus of swap experiments with corresponding sequences from the related hr-PKS DMBS and MILS that produce similar hexa- and heptaketides (2, 3)...
March 14, 2024: RSC Advances
https://read.qxmd.com/read/38084706/morphologically-tunable-rectangular-platelets-self-assembled-from-diblock-molecular-brushes-containing-azopyridine-pendants
#2
JOURNAL ARTICLE
Yuan Yao, Lu Zhang, Sen Zhang, Xiaoyu Huang, Chun Feng, Shaoliang Lin, Binbin Xu
Two-dimensional (2D) platelet structures are of growing importance as building blocks for the preparation of optical and electrical devices. However, the creation of morphologically tunable rectangular platelets through polymer self-assembly still remains a challenge. Herein, we describe a rational strategy for the fabrication of 2D rectangular platelets by stacking azopyridine-containing diblock molecular brushes in two dimensions in a selective solvent. Amphiphilic PEG- co -(P t BA- g -PAzoPy) DMBs with poly(ethylene glycol) (PEG) block, poly( t -butyl acrylate) (P t BA) backbone, and poly(6-(4-(4-pyridyazo)phenoxy)-hexyl methacrylate) (PAzoPy) brush were synthesized by sequential reversible addition-fragmentation chain transfer polymerization and atom transfer radical polymerization...
December 12, 2023: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/37981018/drosophilin-a-methyl-ether-dame-and-other-chlorinated-dimethoxybenzenes-in-fungi-and-forest-litter-from-sweden
#3
JOURNAL ARTICLE
Terry F Bidleman, Lars Ericson, Per Liljelind, Mats Tysklind
Fungi and substrates undergoing fungal decomposition were collected from forests in northern and southern Sweden and analyzed for chlorinated dimethoxybenzenes (DMBs). Specimens were fungi fruiting bodies, rotting wood, forest litter and underlying humus. Targeted compounds were DAME (1,2,4,5-tetrachloro-3,6-DMB) and related fungal secondary metabolites. A screening procedure was developed which involved soaking the specimens in ethyl acetate followed by analysis by capillary gas chromatography - mass spectrometry with mass selective detection (GC-MSD)...
November 17, 2023: Chemosphere
https://read.qxmd.com/read/37768028/the-anticancer-cytotoxic-effect-of-a-novel-gallic-acid-derivative-in-non-small-cell-lung-carcinoma-a549-cells-and-peripheral-blood-mononuclear-cells-from-healthy-individuals-and-lung-cancer-patients
#4
JOURNAL ARTICLE
Shohreh Jafarinejad, William H C Martin, Bayan Abu Ras, Mohammad Isreb, Badie Jacob, Abid Aziz, Zahra Adoul, Ruby Lagnado, Richard D Bowen, Mojgan Najafzadeh
Gallic acid (GA) is a naturally occurring polyphenol with a strong antioxidant capacity. GA stimulates the apoptosis of cancer cells, thereby suppressing cancer cell invasion. However, the low oral permeability of GA limits its therapeutic use. In order to enhance the antioxidant capacity and oral permeability of GA, a series of compounds analogous to GA were synthesized: 4-methoxybenzenesulfonamide (MBS), 3,4-dimethoxybenzenesulfonamide (DMBS) and 3,4,5-trimethoxybenzenesulfonamide (TMBS). In the new compounds, hydroxyl groups were replaced with various numbers of methoxy groups (stronger electron-donating groups), to increase hydrophobicity and oral permeability compared to GA...
September 28, 2023: BioFactors
https://read.qxmd.com/read/36786732/effect-of-organic-ions-on-the-formation-and-collapse-of-nanometric-bubbles-in-ionic-liquid-water-solutions-a-molecular-dynamics-study
#5
JOURNAL ARTICLE
Raffaela Cabriolu, Bruno G Pollet, Pietro Ballone
Molecular dynamics simulation is applied to investigate the effect of two ionic liquids (IL) on the nucleation and growth of (nano)cavities in water under tension and on the cavities' collapse following the release of tension. Simulations of the same phenomena in two pure water samples of different sizes are carried out for comparison. The first IL, i.e., tetra-ethylammonium mesylate ([Tea][Ms]), is relatively hydrophilic and its addition to water at 25 wt % concentration decreases its tendency to nucleate cavities...
February 14, 2023: Journal of Physical Chemistry. B
https://read.qxmd.com/read/36363622/effects-of-the-structure-of-benzenesulfonate-based-draw-solutes-on-the-forward-osmosis-process
#6
JOURNAL ARTICLE
DaEun Yang, Yeonsu Cho, Hyo Kang
A series of phosphonium-based ionic liquids (ILs) based on benzenesulfonate derivatives (tetrabutylphosphonium benzenesulfonate ([TBP][BS]), tetrabutylphosphonium 4-methylbenzenesulfonate ([TBP][MBS]), tetrabutylphosphonium 2,4-dimethylbenzenesulfonate ([TBP][DMBS]), and tetrabutylphosphonium 2,4,6-trimethylbenzenesulfonate ([TBP][TMBS])) were synthesized via anion exchange with tetrabutylphosphonium bromide ([TBP][Br]). Then, we characterized the ILs and investigated their suitability as draw solutes for forward osmosis (FO), focusing on their thermoresponsive properties, conductivities, and osmotic pressures...
October 29, 2022: Membranes
https://read.qxmd.com/read/36353587/development-and-validation-of-a-tissue-based-dna-methylation-risk-score-model-to-predict-the-prognosis-of-surgically-resected-pancreatic-cancer-patients
#7
JOURNAL ARTICLE
Jian Yang, Yuchen Tang, Jie Wang, Chengqing Yu, Haoran Li, Bin Yi, Ye Li, Jian Zhou, Zixiang Zhang
Background: Pancreatic cancer (PC) is a highly malignant tumor associated with low survival rates. It is challenging to predict the survival of surgically resected patients with PC. A prognostic staging tool could be beneficial to guide treatments and also aid post-treatment surveillance. This study aimed to identify tissue-based DNA methylation risk-score model to predict the prognosis of surgically resected pancreatic cancer patients. Methods: We performed a monocentric, retrospective study that included 50 patients with stage I-II PC from The First Affiliated Hospital of Soochow University (SU cohort)...
October 2022: Gland Surgery
https://read.qxmd.com/read/35027051/cell-free-dna-methylation-markers-for-differential-diagnosis-of-hepatocellular-carcinoma
#8
JOURNAL ARTICLE
Biyuan Luo, Fang Ma, Hao Liu, Jixiong Hu, Le Rao, Chun Liu, Yongfang Jiang, Shuyu Kuangzeng, Xuan Lin, Chenyang Wang, Yiyu Lei, Zhongzhou Si, Guangshun Chen, Ning Zhou, Chengbai Liang, Fangqing Jiang, Fenge Liu, Weidong Dai, Wei Liu, Yawen Gao, Zhihong Li, Xi Li, Guangyu Zhou, Bingsi Li, Zhihong Zhang, Weiqi Nian, Lihua Luo, Xianling Liu
BACKGROUND: Aberrant DNA methylation may offer opportunities in revolutionizing cancer screening and diagnosis. We sought to identify a non-invasive DNA methylation-based screening approach using cell-free DNA (cfDNA) for early detection of hepatocellular carcinoma (HCC). METHODS: Differentially, DNA methylation blocks were determined by comparing methylation profiles of biopsy-proven HCC, liver cirrhosis, and normal tissue samples with high throughput DNA bisulfite sequencing...
January 14, 2022: BMC Medicine
https://read.qxmd.com/read/35020545/prevention-of-pancreatitis-after-stent-implantation-for-distal-malignant-biliary-strictures-systematic-review-and-meta-analysis
#9
JOURNAL ARTICLE
Chuanfei Zeng, Yiling Zhang, Hui Yang, Junbo Hong
INTRODUCTION: Biliary stent placement remains a palliative treatment for patients with unresectable distal malignant biliary strictures (DMBS). The incidence of post-ERCP-pancreatitis (PEP) significantly increases in patients receiving fully covered self-expandable metal stents (FCSEMS) who undergo endoscopic retrograde cholangiopancreatography (ERCP). AREAS COVERED: This review provides an overview of prevention of PEP after stent implantation for DMBSs. The following operational variables were evaluated: (1) stent type (plastic or metal stent); (2) stent location (above or across the sphincter of Oddi); (3) prophylactic pancreatic duct stent placement; (4) endoscopic sphincterotomy (EST)...
February 2022: Expert Review of Gastroenterology & Hepatology
https://read.qxmd.com/read/34572550/accurate-sequence-based-prediction-of-deleterious-nssnps-with-multiple-sequence-profiles-and-putative-binding-residues
#10
JOURNAL ARTICLE
Ruiyang Song, Baixin Cao, Zhenling Peng, Christopher J Oldfield, Lukasz Kurgan, Ka-Chun Wong, Jianyi Yang
Non-synonymous single nucleotide polymorphisms (nsSNPs) may result in pathogenic changes that are associated with human diseases. Accurate prediction of these deleterious nsSNPs is in high demand. The existing predictors of deleterious nsSNPs secure modest levels of predictive performance, leaving room for improvements. We propose a new sequence-based predictor, DMBS, which addresses the need to improve the predictive quality. The design of DMBS relies on the observation that the deleterious mutations are likely to occur at the highly conserved and functionally important positions in the protein sequence...
September 9, 2021: Biomolecules
https://read.qxmd.com/read/34543985/chemical-biological-and-protein-receptor-binding-profiling-of-bauhinia-scandens-l-stems-provide-new-insights-into-the-management-of-pain-inflammation-pyrexia-and-thrombosis
#11
JOURNAL ARTICLE
Nazim Uddin Emon, Sajib Rudra, Safaet Alam, Ibrahim Khalil Al Haidar, Susmita Paul, Fahmida Tasnim Richi, Saimon Shahriar, Mohammed Aktar Sayeed, Nadia Islam Tumpa, Amlan Ganguly
Bauhinia scandens L. (Family, Fabaceae) is a medicinal plant used for conventional and societal medication in Ayurveda. The present study has been conducted to screen the chemical, pharmacological and biochemical potentiality of the methanol extracts of B. scandens stems (MEBS) along with its related fractions including carbon tetrachloride (CTBS), di-chloromethane (DMBS) and n-butanol (BTBS). UPLC-QTOF-MS has been implemented to analyze the chemical compounds of the methanol extracts of Bauhinia scandens stems...
November 2021: Biomedicine & Pharmacotherapy
https://read.qxmd.com/read/33896679/efficacy-of-sonothrombolysis-using-acoustically-activated-perflutren-nanodroplets-versus-perflutren-microbubbles
#12
JOURNAL ARTICLE
Soufiane El Kadi, Lijun Qian, Ping Zeng, John Lof, Elizabeth Stolze, Feng Xie, Albert C van Rossum, Otto Kamp, Carr Everbach, Thomas R Porter
Nanoscale-diameter liquid droplets from commercially available microbubbles may optimize thrombus permeation and subsequent thrombus dissolution (TD). Thrombi were made using fresh porcine arterial whole blood and placed in an in vitro vascular simulation. A diagnostic ultrasound probe in contact with a tissue-mimicking phantom tested intermittent high-mechanical-index (HMI) fundamental multipulse (focused ultrasound [FUS], 1.8 MHz) versus harmonic single-pulse (HUS, 1.3 MHz) modes during a 10-min infusion of Definity nanodroplets (DNDs), Definity microbubbles (DMBs) or saline...
April 22, 2021: Ultrasound in Medicine & Biology
https://read.qxmd.com/read/33800011/drunkorexia-and-emotion-regulation-and-emotion-regulation-difficulties-the-mediating-effect-of-disordered-eating-attitudes
#13
JOURNAL ARTICLE
Vanessa Azzi, Souheil Hallit, Diana Malaeb, Sahar Obeid, Anna Brytek-Matera
Drunorexia refers to food calorie intake restriction to prevent weight gain and the desire to enhance the more extensive intoxicating effects of alcohol. The present study aimed to investigate the association of drunkorexia with emotion regulation as well as emotion regulation difficulties across the Lebanese population, and assess disordered eating attitudes as a potential mediator of these relationships. The cross-sectional study enrolled participants ( n = 258) from all Lebanese districts. The study was performed through an online survey based on a self-designed and structured questionnaire...
March 7, 2021: International Journal of Environmental Research and Public Health
https://read.qxmd.com/read/33244984/assessment-of-radiation-doses-received-by-patients-during-endoscopic-retrograde-cholangiopancreatography-according-to-disease-location
#14
JOURNAL ARTICLE
Lourdes Del Olmo Martínez, Benito Velayos Jiménez, María Fe Muñoz Moreno
OBJECTIVE: patients are exposed to ionizing radiation during endoscopic retrograde cholangiopancreatography (ERCP). Radiation dose depends on multiple factors. The goal of this study was to assess fluoroscopy time (FT), radiation doses and effective dose (ED) during ERCP according to the condition being treated. MATERIALS AND METHODS: a descriptive study was performed of 369 consecutive ERCPs from January 2017 to June 2019. Patient demographic and procedure data were collected...
July 2021: Revista Española de Enfermedades Digestivas
https://read.qxmd.com/read/32816679/hardware-design-and-fault-tolerant-synthesis-for-digital-acoustofluidic-biochips
#15
JOURNAL ARTICLE
Zhanwei Zhong, Haodong Zhu, Peiran Zhang, James Morizio, Tony Jun Huang, Krishnendu Chakrabarty
A digital microfluidic biochip (DMB) is an attractive platform for automating laboratory procedures in microbiology. To overcome the problem of cross-contamination due to fouling of the electrode surface in traditional DMBs, a contactless liquid-handling biochip technology, referred to as acoustofluidics, has recently been proposed. A major challenge in operating this platform is the need for a control signal of frequency 24 MHz and voltage range ±10/±20 V to activate the IDT units in the biochip. In this paper, we present a hardware design that can efficiently activate/de-activated each IDT, and can fully automate an bio-protocol...
October 2020: IEEE Transactions on Biomedical Circuits and Systems
https://read.qxmd.com/read/31803427/molecular-basis-of-methylation-and-chain-length-programming-in-a-fungal-iterative-highly-reducing-polyketide-synthase
#16
JOURNAL ARTICLE
Xiao-Long Yang, Steffen Friedrich, Sen Yin, Oliver Piech, Katherine Williams, Thomas J Simpson, Russell J Cox
Exchange of 32 different sub-fragments of the C -methyltransferase ( C -MeT), pseudo-ketoreductase (ΨKR) and ketoreductase (KR) catalytic domains of the tenellin iterative Type I polyketide synthase non ribosomal peptide synthetase (PKS-NRPS) TENS by homologous fragments from the desmethylbassianin (DMBS) and militarinone (MILS) PKS-NRPS led to the creation of chimeric synthetases in which programming fidelity was altered, resulting in the production of mixtures of products with different methylation patterns and chain lengths...
September 28, 2019: Chemical Science
https://read.qxmd.com/read/28501623/efficient-direct-conversion-of-human-fibroblasts-into-myogenic-lineage-induced-by-co-transduction-with-mycl-and-myod1
#17
JOURNAL ARTICLE
Junko Wakao, Tsunao Kishida, Shigehisa Fumino, Koseki Kimura, Kenta Yamamoto, Shin-Ichiro Kotani, Katsura Mizushima, Yuji Naito, Toshikazu Yoshikawa, Tatsuro Tajiri, Osam Mazda
The skeletal muscle consists of contractile myofibers and plays essential roles for maintenance of body posture, movement, and metabolic regulation. During the development and regeneration of the skeletal muscle tissue, the myoblasts fuse into multinucleated myotubes that subsequently form myofibers. Transplantation of myoblasts may make possible a novel regenerative therapy against defects or dysfunction of the skeletal muscle. It is reported that rodent fibroblasts are converted into myoblast-like cells and fuse to form syncytium after forced expression of exogenous myogenic differentiation 1 (MYOD1) that is a key transcription factor for myoblast differentiation...
June 24, 2017: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/27939052/acoustic-behavior-of-a-reactivated-commercially-available-ultrasound-contrast-agent
#18
JOURNAL ARTICLE
Songita A Choudhury, Feng Xie, Paul A Dayton, Thomas R Porter
BACKGROUND: Commercially available microbubbles such as Definity contain octafluoropropane encapsulated in a lipid shell. This perfluorocarbon can be compressed into liquid nanodroplets at room temperatures and activated with transthoracic diagnostic ultrasound. The aim of this study was to determine the size range and acoustic characteristics of Definity nanodroplets (DNDs) compared with Definity microbubbles (DMBs). METHODS: An in vitro flow system was used with a diagnostic ultrasound transducer (S5-1, iE33)...
February 2017: Journal of the American Society of Echocardiography
https://read.qxmd.com/read/26275083/a-retrospective-study-assessing-fully-covered-metal-stents-as-first-line-management-for-malignant-biliary-strictures
#19
MULTICENTER STUDY
Fotios Sampaziotis, Joshua Elias, William T H Gelson, Alexander E Gimson, William J H Griffiths, Jeremy Woodward, Mohamed Shariff, Bruce Macfarlane, Alistair King, Gareth Corbett, Anthony Leahy
OBJECTIVES: Fully covered self-expanding metal stents (FCSEMS) constitute the first type of metal stent that can easily be removed endoscopically and/or intraoperatively, which may be advantageous in the management of distal malignant biliary strictures (DMBS). To assess the efficacy of FCSEMS as first-line treatment for DMBS, we compared patency, survival and complication rates between FCSEMS, uncovered self-expanding metal stents (USEMS) and plastic stents (PS). METHODS: This was a multicentre retrospective study of 315 consecutive patients with DMBS, who underwent endoscopic retrograde cholangiopancreatography and stenting (FCSEMS, USEMS or PS) at two hospitals between 1 January 2007 and 31 December 2013...
November 2015: European Journal of Gastroenterology & Hepatology
https://read.qxmd.com/read/25644844/dissipation-of-triclosan-triclocarban-carbamazepine-and-naproxen-in-agricultural-soil-following-surface-or-sub-surface-application-of-dewatered-municipal-biosolids
#20
JOURNAL ARTICLE
Abdul Jabbar Al-Rajab, Lyne Sabourin, David R Lapen, Edward Topp
In many jurisdictions land application of municipal biosolids is a valued source of nutrients for crop production. The practice must be managed to ensure that crops and adjacent water are not subject to contamination by pharmaceuticals or other organic contaminants. The broad spectrum antimicrobial agents triclosan (TCS) and triclocarban (TCC), the anti-epileptic drug carbamazepine (CBZ), and the nonsteroidal anti-inflammatory drug naproxen (NAP) are widely used and are carried in biosolids. In the present study, the effect of biosolids and depth of placement in the soil profile on the rates of TCS, TCC, CBZ, and NAP dissipation were evaluated under semi-field conditions...
April 15, 2015: Science of the Total Environment
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