keyword
https://read.qxmd.com/read/38553727/dead-box-rna-helicase-5-is-a-new-pro-viral-host-factor-for-sindbis-virus-infection
#21
JOURNAL ARTICLE
Mélanie Messmer, Louison Pierson, Charline Pasquier, Nikola Djordjevic, Johana Chicher, Philippe Hammann, Sébastien Pfeffer, Erika Girardi
BACKGROUND: RNA helicases are emerging as key factors regulating host-virus interactions. The DEAD-box ATP-dependent RNA helicase DDX5, which plays an important role in many aspects of cellular RNA biology, was also found to either promote or inhibit viral replication upon infection with several RNA viruses. Here, our aim is to examine the impact of DDX5 on Sindbis virus (SINV) infection. METHODS: We analysed the interaction between DDX5 and the viral RNA using imaging and RNA-immunoprecipitation approaches...
March 29, 2024: Virology Journal
https://read.qxmd.com/read/38551444/resveratrol-delays-diabetic-cardiomyopathy-fibrosis-by-regulating-mitochondrial-autophagy
#22
JOURNAL ARTICLE
Liqun Yang, Zhe Gao, Hang Zhao, Zhimei Zhang, Guangyao Song
OBJECTIVE: To explore whether resveratrol can postpone the fibrosis associated with diabetic cardiomyopathy (DCM) by modulating the mitochondrial autophagy response through the AMPK/SIRT1-mediated IRE1α/PINK signaling pathway. METHODS: A DCM mouse model was established using a high-sugar high-fat diet and streptozotocin. Resveratrol was administered to a subset of the DCM mouse models for comparison. Echocardiography, Masson staining, TNUEL assay, and transmission electron microscopy were employed to evaluate the cardiac status, myocardial fibrosis, myocardial cell apoptosis, and morphological changes of myocardial cells and their internal mitochondria in each group of mice...
March 29, 2024: Alternative Therapies in Health and Medicine
https://read.qxmd.com/read/38549273/first-report-of-colletotrichum-siamense-causing-fruit-anthracnose-on-pomegranate-punica-granatum-in-china
#23
JOURNAL ARTICLE
Yu Ma, Haiyun Zhu, Xiaocheng Guo, Yang Ke, Chao Sun, Yan Li
As a native crop in central Asia, pomegranate (Punica granatum L.) has been cultivated in China for more than 2000 years (Yuan et al. 2007). In August 2022, typical symptoms of anthracnose were observed on pomegranate fruitlets in the main cultivation area (34°22'36″N, 109°15'58″E) in Shaanxi Province, China. The disease incidence was approximately 10 to 15% in the field. The initial symptoms were slightly small, light, dark, sunken lesions with irregular, circular shapes. As the disease progressed, the necrotic lesions gradually expanded and merged, eventually leading to the abscission of fruits (Figure 1, A)...
March 28, 2024: Plant Disease
https://read.qxmd.com/read/38528453/genome-wide-analysis-of-the-knox-gene-family-in-moso-bamboo-insights-into-their-role-in-promoting-the-rapid-shoot-growth
#24
JOURNAL ARTICLE
Yang Jiao, Jiaqi Tan, Hui Guo, Bin Huang, Yeqing Ying, Muthusamy Ramakrishnan, Zhijun Zhang
BACKGROUND: KNOTTED1-like homeobox (KNOX) genes, plant-specific homologous box transcription factors (TFs), play a central role in regulating plant growth, development, organ formation, and response to biotic and abiotic stresses. However, a comprehensive genome-wide identification of the KNOX genes in Moso bamboo (Phyllostachys edulis), the fastest growing plant, has not yet been conducted, and the specific biological functions of this family remain unknown. RESULTS: The expression profiles of 24 KNOX genes, divided into two subfamilies, were determined by integrating Moso bamboo genome and its transcriptional data...
March 25, 2024: BMC Plant Biology
https://read.qxmd.com/read/38524335/a-simplification-of-intricate-multifocal-electroretinogram-understanding-a-mini-review
#25
REVIEW
Ai-Hong Chen, Muhamad Syukri Mohamad Rafiuddin, Azmir Ahmad, Saiful Azlan Rosli
Variation of multifocal electroretinogram (mfERG) data presentation in existing scientific publications is a challenge for eye care practitioners to apply the scientific information for evidence-based practice in patient management. This review offers an overview of the mfERG data presentation types. Eight types of data presentation in the form of a table, scatter plot, line graph, bar graph/box plot, single waveform/a group of waveforms, trace array topography, three-dimensional topography, and two-dimensional topography are identified...
2024: Oman Journal of Ophthalmology
https://read.qxmd.com/read/38515377/trim6-facilitates-sars-cov-2-proliferation-by-catalyzing-the-k29-typed-ubiquitination-of-np-to-enhance-the-ability-to-bind-viral-genomes
#26
JOURNAL ARTICLE
Jian Zhou, Yuzheng Zhou, Xia-Fei Wei, Lujie Fan, Xiang Gao, Yunfei Li, Yezi Wu, Wei Feng, XiaoTong Shen, Lei Liu, Gang Xu, Zheng Zhang
The Nucleocapsid Protein (NP) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is not only the core structural protein required for viral packaging, but also participates in the regulation of viral replication, and its post-translational modifications such as phosphorylation have been shown to be an important strategy for regulating virus proliferation. Our previous work identified NP could be ubiquitinated, as confirmed by two independent studies. But the function of NP ubiquitination is currently unknown...
March 2024: Journal of Medical Virology
https://read.qxmd.com/read/38514674/squeezing-formaldehyde-into-c-60-fullerene
#27
JOURNAL ARTICLE
Vijyesh K Vyas, George R Bacanu, Murari Soundararajan, Elizabeth S Marsden, Tanzeeha Jafari, Anna Shugai, Mark E Light, Urmas Nagel, Toomas Rõõm, Malcolm H Levitt, Richard J Whitby
The cavity inside fullerene C60 provides a highly symmetric and inert environment for housing atoms and small molecules. Here we report the encapsulation of formaldehyde inside C60 by molecular surgery, yielding the supermolecular complex CH2 O@C60 , despite the 4.4 Å van der Waals length of CH2 O exceeding the 3.7 Å internal diameter of C60 . The presence of CH2 O significantly reduces the cage HOMO-LUMO gap. Nuclear spin-spin couplings are observed between the fullerene host and the formaldehyde guest...
March 21, 2024: Nature Communications
https://read.qxmd.com/read/38510617/the-spectrum-of-acute-and-chronic-consequences-of-neurotrauma-in-professional-and-amateur-boxing-a-call-to-action-is-advocated-to-better-understand-and-prevent-this-phenomenon
#28
REVIEW
Michele Da Broi, Abdullah Al Awadhi, Philippe Voruz, Aria Nouri, Karl Schaller
INTRODUCTION: Despite changes in regulations, boxing-related injuries and fatalities are still occurring. The numbers available in the literature regarding mortality and long-term consequences may not accurately represent the actual situation. Indeed, the real extent of this phenomenon remains poorly known. RESEARCH QUESTION: Delineating the spectrum of acute and chronic consequences of boxing-related traumatic brain injuries (TBI). MATERIAL AND METHODS: Narrative review of the literature concerning acute and chronic boxing-related TBI...
2024: Brain Spine
https://read.qxmd.com/read/38508312/the-scf-fbw7%C3%AE-e3-ligase-mediates-ubiquitination-and-degradation-of-the-serine-threonine-protein-kinase-pink1
#29
JOURNAL ARTICLE
Seo Jeong Jeon, Kwang Chul Chung
Understanding the mechanisms that govern the stability of functionally crucial proteins is essential for various cellular processes, development, and overall cell viability. Disturbances in protein homeostasis are linked to the pathogenesis of neurodegenerative diseases (NDDs). PINK1, a protein kinase, plays a significant role in mitochondrial quality control and cellular stress response, and its mutated forms lead to early-onset Parkinson's disease (PD). Despite its importance, the specific mechanisms regulating PINK1 protein stability have remained unclear...
March 18, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38505490/deep-learning-from-atrioventricular-plane-displacement-in-patients-with-takotsubo-syndrome-lighting-up-the-black-box
#30
JOURNAL ARTICLE
Fahim Zaman, Nicholas Isom, Amanda Chang, Yi Grace Wang, Ahmed Abdelhamid, Arooj Khan, Majesh Makan, Mahmoud Abdelghany, Xiaodong Wu, Kan Liu
AIMS: The spatiotemporal deep convolutional neural network (DCNN) helps reduce echocardiographic readers' erroneous 'judgement calls' on Takotsubo syndrome (TTS). The aim of this study was to improve the interpretability of the spatiotemporal DCNN to discover latent imaging features associated with causative TTS pathophysiology. METHODS AND RESULTS: We applied gradient-weighted class activation mapping analysis to visualize an established spatiotemporal DCNN based on the echocardiographic videos to differentiate TTS (150 patients) from anterior wall ST-segment elevation myocardial infarction (STEMI, 150 patients)...
March 2024: European heart journal. Digital health
https://read.qxmd.com/read/38495160/structural-design-and-material-comparison-for-aircraft-wing-box-beam-panel
#31
JOURNAL ARTICLE
Peter Korba, Samer Al-Rabeei, Michal Hovanec, Ingrid Sekelová, Utku Kale
This paper aims to present a comprehensive investigation to obtain the structural calculations needed to design a rigid panel of aluminum alloy for the wing box beam of an ATR 72-500 aircraft. For this design process, several types of materials, including composites like CFRP, are considered so it is possible to compare the actual existing part made of aluminum to them, thus checking the advantages these new materials offer. The research presents an introduction to structural design and provides a study of the relevant literature...
March 15, 2024: Heliyon
https://read.qxmd.com/read/38494703/reactive-oxygen-species-generation-required-for-autophagy-induction-during-butyrate-or-propionate-induced-release-of-damage-associated-molecular-patterns-from-dying-gingival-epithelial-ca9-22-cells
#32
JOURNAL ARTICLE
Kiwa Miyake, Yoshikazu Mikami, Takayuki Asayama, Taku Toriumi, Keiji Shinozuka, Morio Tonogi, Yoshiyuki Yonehara, Hiromasa Tsuda
PURPOSE: Bacterial cells in mature dental plaque produce a high concentration of short-chain fatty acids (SCFAs) such as butyrate and propionate. SCFA-treatment on human gingival epithelial Ca9-22 cells induced cell death. However, the exact mechanism underlying cell death remains unclear. In this study, the relationship between reactive oxygen species (ROS) and autophagy induction during SCFA-induced cell death was examined. METHODS: Human gingival epithelial Ca9-22 cells were treated with butyrate or propionate to induce cell death and the number of dead cells were measured using SYTOX-green dye...
March 15, 2024: Journal of Oral Science
https://read.qxmd.com/read/38492590/prediction-of-adsorption-of-metal-cations-by-clay-minerals-using-machine-learning
#33
JOURNAL ARTICLE
Shoushi Zhao, Kai Chen, Beiyi Xiong, Chuling Guo, Zhi Dang
Adsorption of heavy metals by clay minerals occurs widely at the solid-liquid interface in natural environments, and in this paper, the phenomenon of adsorption of Cd2+ , Cu2+ , Pb2+ , Zn2+ , Ni2+ and Co2+ by montmorillonite, kaolinite and illite was simulated using machine learning. We firstly used six machine learning models including Random Forest(R), Extremely Forest(E), Gradient Boosting Decision Tree(G), Extreme Gradient Boosting(X), Light Gradient Boosting(LGB) and Category Boosting(CAT) to feature engineer the metal cations and the parameters of the minerals, and based on the feature engineering results, we determined the first order hydrolysis constant(log K), solubility product constant(SPC), and higher hydrolysis constant (HHC) as the descriptors of the metal cations, and site density(SD) and cation exchange capacity(CEC) as the descriptors of the clay minerals...
March 14, 2024: Science of the Total Environment
https://read.qxmd.com/read/38492237/a-tomato-b-box-protein-regulates-plant-development-and-fruit-quality-through-the-interaction-with-pif4-hy5-and-rin-transcription-factors
#34
JOURNAL ARTICLE
Lumi Shiose, Juliene Dos Reis Moreira, Bruno Silvestre Lira, Gabriel Ponciano, Gabriel Gomez Ocampo, Raquel Tsu Ay Wu, José Laurindo Dos Santos Júnior, Nikolaos Ntelkis, Elke Clicque, Maria José Oliveira, Greice Lubini, Eny Iochevet Segal Floh, Javier Francisco Botto, Marcelo José Pena Ferreira, Alain Goossens, Luciano Freschi, Magdalena Rossi
During the last decade, the knowledge about BBX proteins has abruptly increased. Genome-wide studies identified BBX gene family in several ornamental, industry and food crops; however, the reports regarding the role of these genes as regulators of agronomically important traits are scarce. Here, by phenotyping a knockout mutant, we performed a comprehensive functional characterization of the tomato locus Solyc12g089240, hereafter called SlBBX20. The data revealed the encoded protein as a positive regulator of light signaling affecting several physiological processes during plant lifespan...
March 16, 2024: Journal of Experimental Botany
https://read.qxmd.com/read/38485366/how-do-bicyclists-respond-to-vehicles-with-adaptive-headlamp-systems-a-nighttime-study-in-an-immersive-virtual-environment
#35
JOURNAL ARTICLE
Lakshmi Devi Subramanian, Rini Sherony, Joseph K Kearney, Jodie M Plumert, Elizabeth E O'Neal
INTRODUCTION: The risk of motor vehicle-bicyclist crashes and fatalities is greater during nighttime than daytime lighting conditions, even though there are fewer cyclists on roadways at night. Vehicle Adaptive Headlamp Systems (AHS) aim to increase the visibility of bicyclists for drivers by directing a spotlight to illuminate bicyclists on or near the roadway. AHS technology also serves to alert bicyclists to the approaching vehicle by illuminating the road beneath the rider and by projecting a warning icon on the roadway...
February 2024: Journal of Safety Research
https://read.qxmd.com/read/38475568/analysis-of-the-udp-glucosyltransferase-ugt-gene-family-and-its-functional-involvement-in-drought-and-salt-stress-tolerance-in-phoebe-bournei
#36
JOURNAL ARTICLE
Hengfeng Guan, Yanzi Zhang, Jingshu Li, Zhening Zhu, Jiarui Chang, Almas Bakari, Shipin Chen, Kehui Zheng, Shijiang Cao
Uridine diphosphate glycosyltransferases (UDP-GTs, UGTs), which are regulated by UGT genes, play a crucial role in glycosylation. In vivo, the activity of UGT genes can affect the availability of metabolites and the rate at which they can be eliminated from the body. UGT genes can exert their regulatory effects through mechanisms such as post-transcriptional modification, substrate subtype specificity, and drug interactions. Phoebe bournei is an economically significant tree species that is endemic to southern China...
March 4, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38471819/viral-reprogramming-of-host-transcription-initiation
#37
JOURNAL ARTICLE
Nathan A Ungerleider, Claire Roberts, Tina M O'Grady, Trang T Nguyen, Melody Baddoo, Jia Wang, Eman Ishaq, Monica Concha, Meggie Lam, Jordan Bass, Truong D Nguyen, Nick Van Otterloo, Nadeeshika Wickramarachchige-Dona, Dorota Wyczechowska, Maria Morales, Tianfang Ma, Yan Dong, Erik K Flemington
Viruses are master remodelers of the host cell environment in support of infection and virus production. For example, viruses typically regulate cell gene expression through modulating canonical cell promoter activity. Here, we show that Epstein Barr virus (EBV) replication causes 'de novo' transcription initiation at 29674 new transcription start sites throughout the cell genome. De novo transcription initiation is facilitated in part by the unique properties of the viral pre-initiation complex (vPIC) that binds a TATT[T/A]AA, TATA box-like sequence and activates transcription with minimal support by additional transcription factors...
March 12, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38468130/microglial-activation-in-the-lateral-amygdala-promotes-anxiety-like-behaviors-in-mice-with-chronic-moderate-noise-exposure
#38
JOURNAL ARTICLE
Xiaoqi Peng, Yunfeng Mao, Yehao Liu, Qian Dai, Yingju Tai, Bin Luo, Yue Liang, Ruirui Guan, Wenjie Zhou, Lin Chen, Zhi Zhang, Guoming Shen, Haitao Wang
BACKGROUND: Long-term non-traumatic noise exposure, such as heavy traffic noise, can elicit emotional disorders in humans. However, the underlying neural substrate is still poorly understood. METHODS: We exposed mice to moderate white noise for 28 days to induce anxiety-like behaviors, measured by open-field, elevated plus maze, and light-dark box tests. In vivo multi-electrode recordings in awake mice were used to examine neuronal activity. Chemogenetics were used to silence specific brain regions...
March 2024: CNS Neuroscience & Therapeutics
https://read.qxmd.com/read/38466341/forkhead-box-o-proteins-steering-the-course-of-stem-cell-fate
#39
REVIEW
Mengdi Cheng, Yujie Nie, Min Song, Fulin Chen, Yuan Yu
Stem cells are pivotal players in the intricate dance of embryonic development, tissue maintenance, and regeneration. Their behavior is delicately balanced between maintaining their pluripotency and differentiating as needed. Disruptions in this balance can lead to a spectrum of diseases, underscoring the importance of unraveling the complex molecular mechanisms that govern stem cell fate. Forkhead box O (FOXO) proteins, a family of transcription factors, are at the heart of this intricate regulation, influencing a myriad of cellular processes such as survival, metabolism, and DNA repair...
March 11, 2024: Cell Regeneration
https://read.qxmd.com/read/38464467/-mentha-rotundifolia-l-huds-and-salvia-officinalis-l-hydrosols-mitigate-aging-related-comorbidities-in-rats
#40
JOURNAL ARTICLE
Khadija Boualam, Hind Ibork, Zakaria Lahboub, Mansour Sobeh, Khalid Taghzouti
INTRODUCTION: Aging is often linked to oxidative stress, where the body experiences increased damage from free radicals. Plants are rich sources of antioxidants, playing a role in slowing down aging and supporting the proper functioning and longevity of cells. Our study focuses on exploring the impact of Mentha rotundifolia (MR) and Salvia officinalis (SO) hydrosols on aging-related comorbidities. METHODS: The chemical composition of MR and SO hydrosols was analyzed by gas chromatography coupled to mass spectrometry...
2024: Frontiers in Aging Neuroscience
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