keyword
MENU ▼
Read by QxMD icon Read
search

top soil

keyword
https://www.readbyqxmd.com/read/27926823/aliidiomarina-soli-sp-nov-isolated-from-saline-alkaline-soil
#1
Lian Xu, Ji-Quan Sun, Li-Juan Wang, Xiao-Zhen Liu, Yin-Yao Ji, Zhong-Qiu Shao, Xiao-Lei Wu
A Gram-staining-negative, motile, non-spore-forming bacterium designated strain Y4G10-17T was isolated from the saline-alkali farmland top soil, Inner Mongolia, northern China. Strain Y4G10-17T could grow at 4-45°C (with 30°C as the optimal temperature), pH 6.0-12.0 (optimal at pH 9.0), and in the presence of 1.0-12.0 % (w/v) NaCl (optimal at 4.0-6.0 %). Phylogenetic analysis based on the eight different copies of the 16S rRNA gene sequences revealed that strain Y4G10-17T shared the highest sequence similarities with Aliidiomarina maris CF12-14T, 97...
December 7, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27918615/top-down-control-of-methane-emission-and-nitrogen-cycling-by-waterfowl
#2
R Scott Winton, Curtis J Richardson
Aquatic herbivores impose top-down control on the structure of wetland ecosystems, but the biogeochemical consequences of herbivory on methane (CH4 ) and nitrogen (N) are poorly known. To investigate the top-down effects of waterfowl on wetland biogeochemistry, we implemented exclosure experiments in a major waterfowl overwintering wetland in the southeastern United States over two growing seasons. We found that herbivory inhibited the oxidation of CH4 , leading to a mean increase in emission by 230% over control plots, and prevented nitrification, as indicated by low nitrate availability and undetectable emissions of nitrous oxide...
November 4, 2016: Ecology
https://www.readbyqxmd.com/read/27907130/environmental-nitrogen-losses-from-commercial-crop-production-systems-in-the-suwannee-river-basin-of-florida
#3
Rishi Prasad, George J Hochmuth
The springs and the Suwannee river of northern Florida in Middle Suwanee River Basin (MSRB) are among several examples in this planet that have shown a temporal trend of increasing nitrate concentration primarily due to the impacts of non-point sources such as agriculture. The rate of nitrate increase in the river as documented by Ham and Hatzell (1996) was 0.02 mg N L-1 y-1. Best management practices (BMPs) for nutrients were adopted by the commercial farms in the MSRB region to reduce the amounts of pollutants entering the water bodies, however the effectiveness of BMPs remains a topic of interest and discussion among the researchers, environmental administrators and policy makers about the loads of nitrogen entering into groundwater and river systems...
2016: PloS One
https://www.readbyqxmd.com/read/27902208/lysinibacillus-alkalisoli-sp-nov-isolated-from-saline-alkaline-soil
#4
Ji-Quan Sun, Lian Xu, Xiao-Lei Wu
A Gram-staining-positive, aerobic bacterial strain, designated Y2A20T with peritrichous flagella was isolated from the top layer saline-alkaline soil, Hangjin Banner, Inner Mongolia, northern China. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Y2A20T formed a stable clade with 'Lysinibacillus jejuensis' N2-5T. Strain Y2A20T shared the highest 16S rRNA gene sequence similarity with 'L. jejuensis' N2-5T (97.4%), while lower 16S rRNA gene similarities with all other type strains (<97...
October 12, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27898791/high-removal-of-effluent-borne-nitrogen-with-multiple-external-electron-donors-in-the-engineered-drainfield-of-an-advanced-septic-system
#5
Mriganka De, Gurpal S Toor
Septic systems can be a major source of nitrogen (N) in shallow groundwater. We designed an in situ engineered drainfield with aerobic-anaerobic (sand-woodchips) and anaerobic (elemental sulfur-oyster shell) media to remove N in the vadose zone and reduce N transport to groundwater. Effluent was dispersed on top of the engineered drainfield (3.72 m infiltrative surface) and then infiltrated through the aerobic-anaerobic and anaerobic media before reaching natural soil. Water samples were collected over 64 sampling events (May 2012-December 2013) from three parts of the drainfield: (i) a suction cup lysimeter installed at the sand-woodchips interface, (ii) a pipe after effluent passed through the aerobic-anaerobic media, and (iii) a tank containing anaerobic media...
November 2016: Journal of Environmental Quality
https://www.readbyqxmd.com/read/27898790/assessment-of-carbon-stocks-in-the-topsoil-using-random-forest-and-remote-sensing-images
#6
Jongsung Kim, Sabine Grunwald
Wetland soils are able to exhibit both consumption and production of greenhouse gases, and they play an important role in the regulation of the global carbon (C) cycle. Still, it is challenging to accurately evaluate the actual amount of C stored in wetlands. The incorporation of remote sensing data into digital soil models has great potential to assess C stocks in wetland soils. Our objectives were (i) to develop C stock prediction models utilizing remote sensing images and environmental ancillary data, (ii) to identify the prime environmental predictor variables that explain the spatial distribution of soil C, and (iii) to assess the amount of C stored in the top 20-cm soils of a prominent nutrient-enriched wetland...
November 2016: Journal of Environmental Quality
https://www.readbyqxmd.com/read/27894756/bioremediation-of-long-term-pcb-contaminated-soil-by-white-rot-fungi
#7
Tatiana Stella, Stefano Covino, Monika Čvančarová, Alena Filipová, Maurizio Petruccioli, Alessandro D'Annibale, Tomáš Cajthaml
The objective of this work was to test the PCB-degrading abilities of two white-rot fungi, namely Pleurotus ostreatus and Irpex lacteus, in real contaminated soils with different chemical properties and autochthonous microflora. In addition to the efficiency in PCB removal, attention was given to other important parameters, such as changes in the toxicity and formation of PCB transformation products. Moreover, structural shifts and dynamics of both bacterial and fungal communities were monitored using next-generation sequencing and phospholipid fatty acid analysis...
November 17, 2016: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/27890403/isoelectric-points-and-points-of-zero-charge-of-metal-hydr-oxides-50years-after-parks-review
#8
REVIEW
Marek Kosmulski
The pH-dependent surface charging of metal (hydr)oxides is reviewed on the occasion of the 50th anniversary of the publication by G.A. Parks: "Isoelectric points of solid oxides, solid hydroxides, and aqueous hydroxo complex systems" in Chemical Reviews. The point of zero charge (PZC) and isoelectric point (IEP) became standard parameters to characterize metal oxides in aqueous dispersions, and they define adsorption (surface excess) of ions, stability against coagulation, rheological properties of dispersions, etc...
November 5, 2016: Advances in Colloid and Interface Science
https://www.readbyqxmd.com/read/27885418/phylogenetic-and-functional-traits-of-ectomycorrhizal-assemblages-in-top-soil-from-different-biogeographic-regions-and-forest-types
#9
Rodica Pena, Christa Lang, Gertrud Lohaus, Steffen Boch, Peter Schall, Ingo Schöning, Christian Ammer, Markus Fischer, Andrea Polle
Ectomycorrhizal (EM) fungal taxonomic, phylogenetic, and trait diversity (exploration types) were analyzed in beech and conifer forests along a north-to-south gradient in three biogeographic regions in Germany. The taxonomic community structures of the ectomycorrhizal assemblages in top soil were influenced by stand density and forest type, by biogeographic environmental factors (soil physical properties, temperature, and precipitation), and by nitrogen forms (amino acids, ammonium, and nitrate). While α-diversity did not differ between forest types, β-diversity increased, leading to higher γ-diversity on the landscape level when both forest types were present...
November 25, 2016: Mycorrhiza
https://www.readbyqxmd.com/read/27876290/response-of-mixed-methanotrophic-consortia-to-different-methane-to-oxygen-ratios
#10
K Chidambarampadmavathy, O P Karthikeyan, R Huerlimann, G E Maes, K Heimann
Methane (CH4) and oxygen (air) concentrations affect the CH4 oxidation capacity (MOC) and mixed methanotrophic community structures in compost (fresh) and landfill (age old) top cover soils. A change in the mixed methanotrophic community structure in response has implications for landfill CH4 bio-filter remediation and possible bio-product outcomes (i.e., fatty acid methyl esters (FAME) content and profiles and polyhydroxybutyrate (PHB) contents). Therefore the study aimed to evaluate the effect of variable CH4 to oxygen ratios (10-50% CH4 in air) on mixed methanotrophic community structures enriched from landfill top cover (LB) and compost soils (CB) and to quantify flow on impacts on MOC, total FAME contents and profiles, and PHB accumulation...
November 18, 2016: Waste Management
https://www.readbyqxmd.com/read/27871140/metabolic-response-of-agrobacterium-tumefaciens-5a-to-arsenite
#11
Monika Tokmina-Lukaszewska, Zunji Shi, Brian Tripet, Timothy R McDermott, Valérie Copié, Brian Bothner, Gejiao Wang
Wide-spread abundance in soil and water, coupled with high toxicity have put arsenic at the top of the list of environmental contaminants. Early studies demonstrated that both concentration and the valence state of inorganic arsenic (arsenite, As(III) vs. arsenate As(V)) can be modulated by microbes. Using genetics, transcriptomic and proteomic techniques, microbe-arsenic detoxification, respiratory As(V) reduction, and As(III) oxidation have since been examined. The effect of arsenic exposure on whole-cell intracellular microbial metabolism, however, has not been extensively studied...
November 21, 2016: Environmental Microbiology
https://www.readbyqxmd.com/read/27866746/how-does-elevated-ozone-reduce-methane-emissions-from-peatlands
#12
Sylvia Toet, Viktoria Oliver, Phil Ineson, Sophie McLoughlin, Thorunn Helgason, Simon Peacock, Andrew W Stott, Jeremy Barnes, Mike Ashmore
The effects of increased tropospheric ozone (O3) pollution levels on methane (CH4) emissions from peatlands, and their underlying mechanisms, remain unclear. In this study, we exposed peatland mesocosms from a temperate wet heath dominated by the sedge Schoenus nigricans and Sphagnum papillosum to four O3 treatments in open-top chambers for 2.5years, to investigate the O3 impacts on CH4 emissions and the processes that underpin these responses. Summer CH4 emissions, were significantly reduced, by 27% over the experiment, due to summer daytime (8hday(-1)) O3 exposure to non-filtered air (NFA) plus 35ppb O3, but were not significantly affected by year-round, 24hday(-1), exposure to NFA plus 10ppb or NFA plus 25ppb O3...
November 17, 2016: Science of the Total Environment
https://www.readbyqxmd.com/read/27865606/arsenic-contamination-in-agricultural-soils-of-bengal-deltaic-region-of-west-bengal-and-its-higher-assimilation-in-monsoon-rice
#13
Anamika Shrivastava, Anil Barla, Surjit Singh, Shivanand Mandraha, Sutapa Bose
In the Bengal deltaic region, the shallow groundwater laced with arsenic is used for irrigation frequently and has elevated the soil arsenic in agricultural soil. However, the areas with seasonal flooding reduce arsenic in top layers of the soils. Study shows arsenic accumulation in the deeper soil layers with time in the contaminated agricultural soil (19.40±0.38mg/kg in 0-5cm, 27.17±0.44mg/kg in 5-10cm and 41.24±0.48mg/kg in 10-15cm) in 2013 whereas depletion in 2014 and its buildup in different parts of monsoon rice plant in Nadia, India...
November 9, 2016: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/27863868/establishing-geochemical-background-variation-and-threshold-values-for-59-elements-in-australian-surface-soil
#14
Clemens Reimann, Patrice de Caritat
During the National Geochemical Survey of Australia over 1300 top (0-10cm depth) and bottom (~60-80cm depth) sediment samples (including ~10% field duplicates) were collected from the outlet of 1186 catchments covering 81% of the continent at an average sample density of 1 site/5200km(2). The <2mm fraction of these samples was analysed for 59 elements by ICP-MS following an aqua regia digestion. Results are used here to establish the geochemical background variation of these elements, including potentially toxic elements (PTEs), in Australian surface soil...
November 15, 2016: Science of the Total Environment
https://www.readbyqxmd.com/read/27862698/warming-of-subarctic-tundra-increases-emissions-of-all-three-important-greenhouse-gases-carbon-dioxide-methane-and-nitrous-oxide
#15
Carolina Voigt, Richard E Lamprecht, Maija E Marushchak, Saara E Lind, Alexander Novakovskiy, Mika Aurela, Pertti J Martikainen, Christina Biasi
Rapidly rising temperatures in the Arctic might cause a greater release of greenhouse gases (GHGs) to the atmosphere. To study the effect of warming on GHG dynamics, we deployed open-top chambers in a subarctic tundra site in Northeast European Russia. We determined carbon dioxide (CO2 ), methane (CH4 ), and nitrous oxide (N2 O) fluxes as well as the concentration of those gases, inorganic nitrogen (N) and dissolved organic carbon (DOC) along the soil profile. Studied tundra surfaces ranged from mineral to organic soils and from vegetated to unvegetated areas...
November 14, 2016: Global Change Biology
https://www.readbyqxmd.com/read/27836410/using-the-natural-biodegradation-potential-of-shallow-soils-for-in-situ-remediation-of-deep-vadose-zone-and-groundwater
#16
Lior Avishai, Hagar Siebner, Ofer Dahan, Zeev Ronen
In this study, we examined the ability of top soil to degrade perchlorate from infiltrating polluted groundwater under unsaturated conditions. Column experiments designed to simulate typical remediation operation of daily wetting and draining cycles of contaminated water amended with an electron donor. Covering the infiltration area with bentonite ensured anaerobic conditions. The soil remained unsaturated, and redox potential dropped to less than -200mV. Perchlorate was reduced continuously from ∼1150mg/L at the inlet to ∼300mg/L at the outlet in daily cycles...
November 3, 2016: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/27834174/a-metagenomic-analysis-displays-the-diverse-microbial-community-of-a-vermicomposting-system-in-uganda
#17
Anne-Lie Blomström, Cecilia Lalander, Allan John Komakech, Björn Vinnerås, Sofia Boqvist
BACKGROUND: Vermicomposting is a mesophilic process using earthworms to efficiently and at low cost process large volumes of organic waste. It has been suggested to not only increase soil fertility but also increase biomass of beneficial bacteria while reducing harmful bacteria. The aim of this study was to set up a strategy to investigate and characterise the viral as well as the bacterial composition of a vermicomposting system. MATERIAL AND METHODS: The vermicomposting unit used in this study was placed at the Makerere University Agricultural Research Institute Kabanyolo on the outskirts of Kampala, Uganda, and was fed with 80% cattle manure and 20% food waste...
2016: Infection Ecology & Epidemiology
https://www.readbyqxmd.com/read/27829123/functional-architecture-and-global-properties-of-the-corynebacterium-glutamicum-regulatory-network-novel-insights-from-a-dataset-with-a-high-genomic-coverage
#18
Julio A Freyre-González, Andreas Tauch
Corynebacterium glutamicum is a Gram-positive, anaerobic, rod-shaped soil bacterium able to grow on a diversity of carbon sources like sugars and organic acids. It is a biotechnological relevant organism because of its highly efficient ability to biosynthesize amino acids, such as L-glutamic acid and L-lysine. Here, we reconstructed the most complete C. glutamicum regulatory network to date and comprehensively analyzed its global organizational properties, systems-level features and functional architecture...
November 6, 2016: Journal of Biotechnology
https://www.readbyqxmd.com/read/27827965/arsenic-and-heavy-metal-contamination-in-soils-under-different-land-use-in-an-estuary-in-northern-vietnam
#19
Thinh Nguyen Van, Akinori Ozaki, Hoang Nguyen Tho, Anh Nguyen Duc, Yen Tran Thi, Kiyoshi Kurosawa
Heavy metal contamination of soil and sediment in estuaries warrants study because a healthy estuarine environment, including healthy soil, is important in order to achieve ecological balance and good aquaculture production. The Ba Lat estuary of the Red River is the largest estuary in northern Vietnam and is employed in various land uses. However, the heavy metal contamination of its soil has not yet been reported. The following research was conducted to clarify contamination levels, supply sources, and the effect of land use on heavy metal concentrations in the estuary...
November 5, 2016: International Journal of Environmental Research and Public Health
https://www.readbyqxmd.com/read/27822221/activation-of-hls1-by-mechanical-stress-via-ethylene-stabilized-ein3-is-crucial-for-seedling-soil-emergence
#20
Xing Shen, Yanli Li, Ying Pan, Shangwei Zhong
The seeds of terrestrial flowering plants often start their life cycle in subterranean darkness. To protect the fragile apical meristematic tissues and cotyledons from mechanical injuries during soil penetration, dicotyledonous seedlings form an elegant apical hook at the top of the hypocotyl. The apical hook has been considered as an adaption structure to the subterranean environment. However, the role of the apical hook in seedling emergence and the molecular mechanism of apical hook formation under real-life conditions remain highly speculative...
2016: Frontiers in Plant Science
keyword
keyword
23766
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"