keyword
https://read.qxmd.com/read/38516018/nanopore-sequencing-for-identification-and-characterization-of-antimicrobial-resistant-escherichia-coli-and-salmonella-spp-from-tilapia-and-shrimp-sold-at-wet-markets-in-dhaka-bangladesh
#21
JOURNAL ARTICLE
Shafiq Rheman, Sabrina Hossain, Md Samun Sarker, Farhana Akter, Laura Khor, Han Ming Gan, Andy Powell, Roderick M Card, Yaovi Mahuton Gildas Hounmanou, Anders Dalsgaard, Chadag Vishnumurthy Mohan, Zamila Bueaza Bupasha, Mohammed A Samad, David W Verner-Jeffreys, Jérôme Delamare-Deboutteville
Wet markets in low-and middle-income countries are often reported to have inadequate sanitation resulting in fecal contamination of sold produce. Consumption of contaminated wet market-sourced foods has been linked to individual illness and disease outbreaks. This pilot study, conducted in two major wet markets in Dhaka city, Bangladesh during a 4-month period in 2021 aimed to assess the occurrence and characteristics of Escherichia coli and non-typhoidal Salmonella spp. (NTS) from tilapia ( Oreochromis niloticus ) and shrimp ( Penaeus monodon )...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38511154/moving-towards-on-site-detection-of-shiga-toxin-producing-escherichia-coli-in-ready-to-eat-leafy-greens
#22
JOURNAL ARTICLE
Ana Costa-Ribeiro, Alexandre Lamas, Azucena Mora, Marta Prado, Alejandro Garrido-Maestu
Rapid identification of Shiga toxin-producing Escherichia coli , or STEC, is of utmost importance to assure the innocuousness of the foodstuffs. STEC have been implicated in outbreaks associated with different types of foods however, among them, ready-to-eat (RTE) vegetables are particularly problematic as they are consumed raw, and are rich in compounds that inhibit DNA-based detection methods such as qPCR. In the present study a novel method based on Loop-mediated isothermal amplification (LAMP) to overcome the limitations associated with current molecular methods for the detection of STEC in RTE vegetables targeting stx 1 and stx 2 genes...
2024: Current research in food science
https://read.qxmd.com/read/38484844/isolation-of-shiga-toxin-producing-escherichia-coli-from-the-surfaces-of-beef-carcasses-in-slaughterhouses-in-japan
#23
JOURNAL ARTICLE
Shunsuke Ikeuchi, Shouhei Hirose, Kohei Shimada, Ayako Koyama, Shoji Ishida, Naoto Katayama, Takehiko Suzuki, Akiko Tokairin, Mayumi Tsukamoto, Yuki Tsue, Kenichi Yamaguchi, Hideo Osako, Sachiko Hiwatashi, Yumi Chiba, Hiroshi Akiyama, Hideki Hayashidani, Yukiko Hara-Kudo
Shiga toxin-producing E. coli (STEC) is an important foodborne pathogen worldwide. It is necessary to control and prevent STEC contamination on beef carcasses in slaughterhouses because STEC infection is associated with beef consumption. However, the frequencies of STEC contamination of beef carcasses in various slaughterhouses in Japan are not well known. Herein, we investigated the contamination of beef carcasses with STEC in slaughterhouses to assess the potential risks of STEC. In total, 524 gauze samples were collected from the surfaces of beef carcasses at 12 domestic slaughterhouses from November 2020 to February 2023...
March 12, 2024: Journal of Food Protection
https://read.qxmd.com/read/38473417/identification-of-gb3-as-a-novel-biomarker-of-tumor-derived-vasculature-in-neuroblastoma-using-a-stiffness-based-model
#24
JOURNAL ARTICLE
Aranzazu Villasante, Josep Corominas, Clara Alcon, Andrea Garcia-Lizarribar, Jaume Mora, Monica Lopez-Fanarraga, Josep Samitier
Neuroblastoma (NB) is a childhood cancer in sympathetic nervous system cells. NB exhibits cellular heterogeneity, with adrenergic and mesenchymal states displaying distinct tumorigenic potentials. NB is highly vascularized, and blood vessels can form through various mechanisms, including endothelial transdifferentiation, leading to the development of tumor-derived endothelial cells (TECs) associated with chemoresistance. We lack specific biomarkers for TECs. Therefore, identifying new TEC biomarkers is vital for effective NB therapies...
March 5, 2024: Cancers
https://read.qxmd.com/read/38472311/synthesis-of-biologically-active-shiga-toxins-in-cell-free-systems
#25
JOURNAL ARTICLE
Franziska Ramm, Danny Kaser, Irina König, Juliane Fellendorf, Dana Wenzel, Anne Zemella, Panagiotis Papatheodorou, Holger Barth, Herbert Schmidt
Shiga toxins (Stx) produced by pathogenic bacteria can cause mild to severe diseases in humans. Thus, the analysis of such toxins is of utmost importance. As an AB5 toxin, Stx consist of a catalytic A-subunit acting as a ribosome-inactivating protein (RIP) and a B-pentamer binding domain. In this study we synthesized the subunits and holotoxins from Stx and Stx2a using different cell-free systems, namely an E. coli- and CHO-based cell-free protein synthesis (CFPS) system. The functional activity of the protein toxins was analyzed in two ways...
March 13, 2024: Scientific Reports
https://read.qxmd.com/read/38467395/antimicrobial-resistance-%C3%AE-lactamase-genotypes-and-plasmid-replicon-types-of-shiga-toxin-producing-escherichia-coli-isolated-from-different-animal-hosts
#26
JOURNAL ARTICLE
Rwida Tomeh, Ali Nemati, Gholamreza Hashemi Tabar, Rosangela Tozzoli, Mahdi Askari Badouei
AIMS: The primary objective of this study was to analyze antimicrobial resistance (AMR), with a particular focus on β-lactamase genotypes and plasmid replicon types of STEC strains originating from various animal hosts. METHODS AND RESULTS: A total of 84 STEC strains were isolated from cattle (n=32), sheep/goats (n=26), pigeons (n=20), and wild animals (n=6) between 2010 and 2018 in various regions of Iran. The Kirby-Bauer susceptibility test and multiple polymerase chain reaction (PCR) panels were employed to elucidate the correlation between AMR and plasmid replicon types in STEC isolates...
March 11, 2024: Journal of Applied Microbiology
https://read.qxmd.com/read/38467020/structure-function-analysis-of-the-a1-subunit-of-shiga-toxin-2-with-peptides-that-target-the-p-stalk-binding-site-and-inhibit-activity
#27
JOURNAL ARTICLE
Xiao-Ping Li, Michael J Rudolph, Yang Chen, Nilgun E Tumer
Shiga toxin 2a (Stx2a) is the virulence factor of Escherichia coli (STEC), which is associated with hemolytic uremic syndrome, the leading cause of pediatric kidney failure. The A1 subunit of Stx2a (Stx2A1) binds to the conserved C-terminal domain (CTD) of the ribosomal P-stalk proteins to remove an adenine from the sarcin-ricin loop (SRL) in the 28S rRNA, inhibiting protein synthesis. There are no antidotes against Stx2a or any other ribosome-inactivating protein (RIP). The structural and functional details of the binding of Stx2A1 to the P-stalk CTD are not known...
March 11, 2024: Biochemistry
https://read.qxmd.com/read/38461188/re-analysis-of-an-outbreak-of-shiga-toxin-producing-escherichia-coli-o157-h7-associated-with-raw-drinking-milk-using-nanopore-sequencing
#28
JOURNAL ARTICLE
David R Greig, Vivienne Do Nascimento, David L Gally, Saheer E Gharbia, Timothy J Dallman, Claire Jenkins
The aim of this study was to compare Illumina and Oxford Nanopore Technology (ONT) sequencing data to quantify genetic variation to assess within-outbreak strain relatedness and characterise microevolutionary events in the accessory genomes of a cluster of 23 genetically and epidemiologically linked isolates related to an outbreak of Shiga toxin-producing Escherichia coli O157:H7 caused by the consumption of raw drinking milk. There were seven discrepant variants called between the two technologies, five were false-negative or false-positive variants in the Illumina data and two were false-negative calls in ONT data...
March 9, 2024: Scientific Reports
https://read.qxmd.com/read/38457435/persistence-comparison-of-two-shiga-toxin-producing-escherichia-coli-stec-serovars-during-long-term-storage-and-thermal-inactivation-in-various-wheat-flours
#29
JOURNAL ARTICLE
Ian S Hines, Tom Jurkiw, Emily Nguyen, Martine Ferguson, Sultana Solaiman, Elizabeth Reed, Maria Hoffmann, Jie Zheng
Foodborne outbreaks associated with Shiga toxin-producing Escherichia coli (STEC) contaminated wheat flour have been an increasing food safety concern in recent decades. However, there is little literature aimed at investigating the impact of different flour types on the persistence of STEC during storage and thermal inactivation. Therefore, two serovars of STEC, O121 and O157, were selected to inoculate each of five different types of common wheat flours: whole wheat, bleached, unbleached, bread, and self-rising...
2024: PloS One
https://read.qxmd.com/read/38452173/shiga-toxin-producing-escherichia-coli-testing-in-new-york-2011-2022-reveals-increase-in-non-o157-identifications
#30
JOURNAL ARTICLE
Ashley E Cukrovany, Danielle Wroblewski, Samantha E Wirth, Lisa M Thompson, Amy L Saylors, Julia A Connors, Deborah J Baker, Michelle C Dickinson, Charles E MacGowan, Cyndel Vollmer, Daniel T Woods, Kimberlee A Musser, Lisa A Mingle
Shiga toxin-producing Escherichia coli (STEC) are an important cause of bacterial enteric infection. STEC strains cause serious human gastrointestinal disease, which may result in life-threatening complications such as hemolytic uremic syndrome. They have the potential to impact public health due to diagnostic challenges of identifying non-O157 strains in the clinical laboratory. The Wadsworth Center (WC), the public health laboratory of the New York State Department of Health, has isolated and identified non-O157 STEC for decades...
March 7, 2024: Foodborne Pathogens and Disease
https://read.qxmd.com/read/38449023/exploring-the-modulatory-role-of-bovine-lactoferrin-on-the-microbiome-and-the-immune-response-in-healthy-and-shiga-toxin-producing-e-coli-challenged-weaned-piglets
#31
JOURNAL ARTICLE
Matthias Dierick, Ruben Ongena, Daisy Vanrompay, Bert Devriendt, Eric Cox
BACKGROUND: Post-weaned piglets suffer from F18+ Escherichia coli (E. coli) infections resulting in post-weaning diarrhoea or oedema disease. Frequently used management strategies, including colistin and zinc oxide, have contributed to the emergence and spread of antimicrobial resistance. Novel antimicrobials capable of directly interacting with pathogens and modulating the host immune responses are being investigated. Lactoferrin has shown promising results against porcine enterotoxigenic E...
March 6, 2024: Journal of Animal Science and Biotechnology
https://read.qxmd.com/read/38441926/closing-the-gap-oxford-nanopore-technologies-r10-sequencing-allows-comparable-results-to-illumina-sequencing-for-snp-based-outbreak-investigation-of-bacterial-pathogens
#32
JOURNAL ARTICLE
Bert Bogaerts, An Van den Bossche, Bavo Verhaegen, Laurence Delbrassinne, Wesley Mattheus, Stéphanie Nouws, Maxime Godfroid, Stefan Hoffman, Nancy H C Roosens, Sigrid C J De Keersmaecker, Kevin Vanneste
Whole-genome sequencing has become the method of choice for bacterial outbreak investigation, with most clinical and public health laboratories currently routinely using short-read Illumina sequencing. Recently, long-read Oxford Nanopore Technologies (ONT) sequencing has gained prominence and may offer advantages over short-read sequencing, particularly with the recent introduction of the R10 chemistry, which promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation...
March 5, 2024: Journal of Clinical Microbiology
https://read.qxmd.com/read/38431789/stec-colitis-mimicking-acute-severe-colitis-with-life-threatening-consequences-a-case-report
#33
T Hendrickx, M Peetermans, A D'Hoore, K Claes, A Van Hootegem, J Sabino
Acute colitis is a common feature of infection with Shiga-toxin producing Escherichia coli (STEC) and can mimic acute severe ulcerative colitis. Early recognition is important as there is a risk of developing Shiga toxin-induced haemolytic uremic syndrome (STEC-HUS), defined by the triad of microangiopathic haemolytic anemia, thrombocytopenia and organ damage. In severe cases STEC-HUS can cause severe neurological complications and can be fatal. We present a patient with a medical history of refractory ulcerative colitis, where making the diagnosis of STEC-HUS was challenging since the initial clinical presentation was difficult to differentiate from a flare of ulcerative colitis...
2024: Acta Gastro-enterologica Belgica
https://read.qxmd.com/read/38431328/population-dynamics-and-bidirectional-transfer-of-listeria-monocytogenes-and-shiga-toxin-producing-escherichia-coli-during-cheese-production-in-wooden-vats
#34
JOURNAL ARTICLE
Lang Sun, Dennis J D'Amico
Wooden vats are used in the production of some traditional cheeses as the biofilms on wooden vat surfaces are known to transfer large quantities of microbes to cheese. However, the safety of using wooden vats for cheese production remains controversial as the porous structure of wood provides an irregular surface that may protect any attached pathogen cells from cleaning and sanitation processes. On the other hand, the absence of pathogens in wooden vats has been reported in multiple studies and wooden materials have not been associated with foodborne illness outbreaks...
June 2024: Food Microbiology
https://read.qxmd.com/read/38428462/comparison-of-three-pre-harvest-sampling-strategies-to-monitor-pathogens-in-cattle-lairage-areas
#35
JOURNAL ARTICLE
Makenzie G Flach, Onay B Dogan, Mark F Miller, Marcos X Sanchez, Mindy M Brashears
The objective of this study was to compare pre-harvest monitoring strategies by evaluating three different sampling methods in the lairage area to determine pathogen recovery for each sampling method and incoming pathogen prevalence from the cattle to inform in-plant decision making. Samples were gathered over a 5-month period, from February to June 2022, at a harvesting and processing facility located in Eastern Nebraska. Sampling methods included (i) fecal pats, (ii) boot swabs, and (iii) MicroTally swab...
February 28, 2024: Journal of Food Protection
https://read.qxmd.com/read/38427452/authors-reply-eculizumab-seems-to-be-a-life-saver-even-in-shiga-toxin-related-hemolytic-uremic-syndrome
#36
JOURNAL ARTICLE
Arnaud Garnier
No abstract text is available yet for this article.
March 1, 2024: Journal of the American Society of Nephrology: JASN
https://read.qxmd.com/read/38427451/eculizumab-seems-to-be-a-life-saver-even-in-shiga-toxin-related-hemolytic-uremic-syndrome
#37
JOURNAL ARTICLE
Jaicy Pottokaran
No abstract text is available yet for this article.
March 1, 2024: Journal of the American Society of Nephrology: JASN
https://read.qxmd.com/read/38419484/shiga-toxin-producing-escherichia-coli-isolated-from-hunted-wild-boar-sus-scrofa-in-switzerland
#38
JOURNAL ARTICLE
M Nüesch-Inderbinen, K Barmettler, M J A Stevens, N Cernela
Shiga toxin-producing Escherichia (E.) coli (STEC) are zoonotic foodborne pathogens of significant public health importance. While ruminants are considered the main reservoir, wild animals are increasingly acknowledged as carriers and potential reservoirs of STEC. The aim of this study was to determine the occurrence of STEC in a total of 59 faecal samples of hunted wild boars (Sus scrofa) from two different regions in Switzerland (canton Thurgau in northern Switzerland and canton Ticino in southern Switzerland), and to characterise the isolates using a whole genome sequencing approach...
March 2024: Schweizer Archiv Für Tierheilkunde
https://read.qxmd.com/read/38404796/production-of-egg-yolk-antibody-igy-against-a-chimeric-protein-containing-ipad-stxb-and-tolc-antigens-from-shigella-an-investigation-of-its-prophylactic-effects-against-shiga-toxin-stx-and-shigella-dysenteriae-in-vitro-and-in-vivo
#39
JOURNAL ARTICLE
Nahal Hadi, Shahram Nazarian, Saber Rouhi, Seyed Edris Hosseini, Javad Fathi
Shigella is a major problem in developing countries. Immunoglobulin Y (IgY) can be used for prophylaxis and neutralize bacteria. The aim of this study was to produce IgY against the chimeric protein containing IpaD, StxB, and TolC antigens from Shigella , investigate its prophylactic and neutralizing effects against Stx and Shigella dysenteriae . The nucleotide sequence corresponding to the chimeric protein was cloned into pET28a plasmid and expressed in E. coli BL21 (DE3). Protein expression was confirmed by SDS-PAGE and the recombinant protein was purified by Ni-NTA affinity chromatography...
February 29, 2024: Heliyon
https://read.qxmd.com/read/38403892/shedding-and-exclusion-from-childcare-in-children-with-shiga-toxin-producing-escherichia-coli-2018-2022
#40
JOURNAL ARTICLE
Amoolya Vusirikala, Sam Rowell, Girija Dabke, Georgina Fox, Jade Bell, Rohini Manuel, Claire Jenkins, Nicola Love, Noel McCarthy, Dana Sumilo, Sooria Balasegaram
No abstract text is available yet for this article.
February 26, 2024: Epidemiology and Infection
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