Read by QxMD icon Read


Luís Duarte, Leonid Khriachtchev, Rui Fausto, Igor Reva
2,2'-Dihydroxyazobenzene (DAB), 2,2'-azotoluene (AT) and azobenzene (AB) were isolated in argon and xenon matrices and their molecular structures and photochemical transformations were characterized by infrared spectroscopy and theoretical calculations. All these compounds can adopt the E and Z isomeric forms around the central CNNC moiety, which can be enriched by several conformational and tautomeric modifications for DAB and AT. A number of DAB and AT isomeric forms were identified for the first time. For DAB, the E azo-enol isomer with two intramolecular six-membered quasi-rings formed via OHN hydrogen bonds was found after deposition...
June 22, 2016: Physical Chemistry Chemical Physics: PCCP
Géraldine Féraud, Claude Dedonder-Lardeux, Christophe Jouvet, Ernesto Marceca
Gas phase photodissociation electronic spectra of protonated azobenzene (ABH(+)) and 4-(dimethylamino)azobenzene (dmaABH(+)) were measured in a cryogenically cooled ion trap at temperatures of a few tens of Kelvin. Experimental results were complemented with electronic structure calculations in the ground state at the MP2/cc-pVDZ level of theory, and in the low lying excited states using the RI-CC2 method. Calculated energies revealed that only the trans isomers of the azonium molecular ions (protonation site on the azo group) will likely exist in the trap at the temperatures achieved in the experiment...
June 9, 2016: Journal of Physical Chemistry. A
M H Le, R Warotayanont, J Stahl, P K Den Besten, Y Nakano
Amelogenins constitute the major portion of secretory enamel matrix proteins and are known to be highly alternative spliced. Of all the alternatively spliced forms of amelogenins, exon4 is most commonly spliced out. Our analyses of the exon4 sequence led us to hypothesize that when spliced out, exon4 may generate a novel mature miRNA. To explore this possibility, we used in vivo mouse models (wild-type and Amel knockout mice) and in vitro cell culture to investigate the presence and function of a mature miRNA derived from exon4 (miR-exon4)...
April 2016: Journal of Dental Research
Xujun Liu, Leilei Guan, Xiaoniu Fu, Yu Zhao, Jiada Wu, Ning Xu
Light-absorbing and electrically conductive binary CNx nanocone (CNNC) arrays have been fabricated using a glow discharge plasma-assisted reaction deposition method. The intact CNNCs with amorphous structure and central nickel-filled pipelines could be vertically and neatly grown on nickel-covered substrates according to the catalyst-leading mode. The morphologies and composition of the as-grown CNNC arrays can be well controlled by regulating the methane/nitrogen mixture inlet ratio, and their optical absorption and resistivity strongly depend on their morphologies and composition...
2014: Nanoscale Research Letters
Vincent C Auyeung, Igor Ulitsky, Sean E McGeary, David P Bartel
To use microRNAs to downregulate mRNA targets, cells must first process these ~22 nt RNAs from primary transcripts (pri-miRNAs). These transcripts form RNA hairpins important for processing, but additional determinants must distinguish pri-miRNAs from the many other hairpin-containing transcripts expressed in each cell. Illustrating the complexity of this recognition, we show that most Caenorhabditis elegans pri-miRNAs lack determinants required for processing in human cells. To find these determinants, we generated many variants of four human pri-miRNAs, sequenced millions that retained function, and compared them with the starting variants...
February 14, 2013: Cell
Robert L Kerby, Gary P Roberts
The single-component RcoM transcription factor couples an N-terminally bound heme cofactor with a C-terminal "LytTR" DNA-binding domain. Here the RcoM(Bx)-1 protein from Burkholderia xenovorans LB400 was heterologously expressed and then purified in a form with minimal bound CO (~10%) and was found to stably bind this effector with a nanomolar affinity. DNase I protection assays demonstrated that the CO-associated form binds with a micromolar affinity to two ~60-bp DNA regions, each comprised of a novel set of three direct-repeat binding sites spaced 21 bp apart on center...
November 2012: Journal of Bacteriology
Sayak Roy, Biprajit Sarkar, Hans-Georg Imrich, Jan Fiedler, Stanislav Záliš, Reyes Jimenez-Aparicio, Francisco A Urbanos, Shaikh M Mobin, Goutam Kumar Lahiri, Wolfgang Kaim
Neutral diastereoisomeric diruthenium(III) complexes, meso- and rac-[(acac)(2)Ru(μ-adc-OR)Ru(acac)(2)] (acac(-) = 2,4-pentanedionato and adc-OR(2-) = dialkylazodicarboxylato = [RO(O)CNNC(O)OR](2-), R = tert-butyl or isopropyl), were obtained from electron transfer reactions between Ru(acac)(2)(CH(3)CN)(2) and azodicarboxylic acid dialkyl esters (adc-OR). The meso isomer 3 with R = isopropyl was structurally characterized, revealing two deprotonated and N-N coupled carbamate functions in a reduced dianionic bridge with d(N-N) = 1...
September 3, 2012: Inorganic Chemistry
David P Hoffman, Richard A Mathies
Azobenzenes are used in many applications because of their robust and reversible light induced trans⇋cis isomerization about the N=N bond, but the mechanism of this ultrafast reaction has not been conclusively defined. Addressing this problem we have used Femtosecond Stimulated Raman Spectroscopy (FSRS) to determine the structural transients in the trans→cis photoisomerization of the azobenzene derivative, 4-nitro-4'-dimethylamino-azobenzene (NDAB). Key marker modes, such as the 1570/1590 cm(-1) NO(2) stretch and the 1630 cm(-1) C-N(Me)(2) stretch, enable the separation and analysis of distinct trans and cis photoproduct dynamics revealing the 400 fs Frank-Condon relaxation, the 800 fs timescale of the cis product formation and the 2 ps emergence and 8 ps relaxation of the unsuccessful ground state trans species...
May 14, 2012: Physical Chemistry Chemical Physics: PCCP
Marek Pederzoli, Jiří Pittner, Mario Barbatti, Hans Lischka
Ab initio nonadiabatic dynamics simulations of cis-to-trans isomerization of azobenzene upon S(1) (n-π*) excitation are carried out employing the fewest-switches surface hopping method. Azobenzene photoisomerization occurs purely as a rotational motion of the central CNNC moiety. Two nonequivalent rotational pathways corresponding to clockwise or counterclockwise rotation are available. The course of the rotational motion is strongly dependent on the initial conditions. The internal conversion occurs via an S(0)/S(1) crossing seam located near the midpoint of both of these rotational pathways...
October 20, 2011: Journal of Physical Chemistry. A
Chen-Wei Jiang, Rui-Hua Xie, Fu-Li Li, Roland E Allen
Using density-functional-based molecular dynamics simulations, we have performed comparative studies of the trans-cis isomerizations of azobenzene and bridged azobenzene (B-Ab) 5,6-dihydrodibenzo[c,g][1,2]diazocine induced by nπ* electronic excitation. The quantum yields found in our calculations, 45% for the bridged azobenzene versus 25% for azobenzene, are consistent with the experiment. Both isomerization processes involve two steps: (1) Starting from the trans structure, each molecule moves on its S(1) excited-state potential energy surface, via rotation around the NN bond, to an avoided crossing near the S(1)/S(0) conical intersection, where de-excitation occurs...
January 27, 2011: Journal of Physical Chemistry. A
Ron Siewertsen, Jan Boyke Schönborn, Bernd Hartke, Falk Renth, Friedrich Temps
The ultrafast Z→E and E→Z photoisomerisation dynamics of 5,6-dihydrodibenzo[c,g][1,2]diazocine (1), the parent compound of a class of bridged azobenzene-based photochromic molecular switches with a severely constrained eight-membered heterocyclic ring as central unit, have been studied by femtosecond time-resolved spectroscopy in n-hexane as solvent and by quantum chemical calculations. The diazocine contrasts with azobenzene (AB) in that its Z rather than E isomer is the energetically more stable form...
January 21, 2011: Physical Chemistry Chemical Physics: PCCP
Matthias Ruckenbauer, Mario Barbatti, Bernhard Sellner, Thomas Muller, Hans Lischka
The nonadiabatic deactivation of trans-azomethane starting from the nπ* state has been investigated in gas phase, water, and n-hexane using an on-the-fly surface-hopping method. A quantum mechanical/molecular mechanics (QM/MM) approach was used employing a flexible quantum chemical level for the description of electronically excited states and bond dissociation (generalized valence bond perfect-pairing complete active space). The solvent effect on the lifetime and structural parameters of azomethane was investigated in detail...
December 9, 2010: Journal of Physical Chemistry. A
Marcus Böckmann, Nikos L Doltsinis, Dominik Marx
A nonadiabatic hybrid quantum and molecular mechanical (na-QM/MM) molecular dynamics scheme has been implemented recently combining the nonadiabatic Car-Parrinello molecular dynamics method by Doltsinis and Marx [Phys. Rev. Lett. 2002, 88, 166402] with the QM/MM coupling approach by Laio et al. [J. Chem. Phys. 2002, 116, 6941]. Here an extensive validation of the underlying, density functional theory based, electronic structure methods by comparison to CASPT2 ab initio data is presented for the case of azobenzene...
January 21, 2010: Journal of Physical Chemistry. A
Jr-Wei Ho, Wei-Kan Chen, Po-Yuan Cheng
We report studies of ultrafast dynamics of azobenzene cation using femtosecond photoionization-photofragmentation spectroscopy. In our experiments, a femtosecond pump pulse first produces an ensemble of azobenzene cations via photoionization of the neutrals. A delayed probe pulse then brings the evolving ionic system to excited states that ultimately undergo ion fragmentation. The dynamics is followed by monitoring either the parent-ion depletion or fragment-ion formation as a function of the pump-probe delay time...
October 7, 2009: Journal of Chemical Physics
J Olazarán, E Navarro, Ml Galiano, A Vaquero, A Guillem, F Villaverde, Y Fernández
INTRODUCTION: The medical conditions shared by hospital emergency services and community-hospital neurology clinics (CHNC) have not been described, and the quality of the medical care received in these conditions has not been evaluated in our environment. METHODS: Over a 2 month period, those patients presenting at any of the seven CHNC in a Health Care Area 1 of Madrid due to previously attended medical conditions in the emergency services were systematically registered...
May 2009: Neurología: Publicación Oficial de la Sociedad Española de Neurología
Luoxin Wang, Weilin Xu, Changhai Yi, Xiaogong Wang
In this work, some critical structures (e.g. stable structure, transition state, local minimum and conical intersection) of azobenzene photoisomerization were optimized by means of ab initio CASSCF calculation. The potential energy surfaces for the CNNC dihedral torsion and CNN bond angle concerted-inversion pathway were mapped to explore the relaxation process of azobenzene (AB) photoisomerization. The results indicate that the rotational mechanism favors the photoisomerization of the S(1)(n,pi*) and S(2)(pi,pi*) trans-AB...
April 2009: Journal of Molecular Graphics & Modelling
Petra Sauer, Roland E Allen
When a molecule is subjected to a short intense laser pulse, the ensuing dynamical processes depend qualitatively on the pulse parameters, including duration, frequency, and fluence. Here we report studies of cis to trans photoisomerization of azobenzene following femtosecond-scale laser pulses which are relatively short (10 fs) or long (100 fs) and which have a central frequency matched to either the first excited state (S1, or HOMO to LUMO in a molecular orbital picture) or the second (S2, or HOMO-1 to LUMO)...
November 6, 2008: Journal of Physical Chemistry. A
Christina M Stuart, Renee R Frontiera, Richard A Mathies
Resonance Raman intensity analysis was used to investigate the initial excited-state nuclear dynamics of cis- and trans-azobenzene following S1 (npi*) excitation, and fluorescence quantum yield measurements were used to estimate the excited-state lifetimes. trans-Azobenzene exhibits the strongest Raman intensities in its skeletal stretching and bending modes, while torsional motions dominate the nuclear relaxation of cis-azobenzene as indicated by intense Raman lines at 275, 542, 594, and 778 cm(-1). The very weak fluorescence quantum yield for cis-azobenzene is consistent with its approximately 100 fs electronic lifetime while trans-azobenzene, with a fluorescence quantum yield of 1...
December 6, 2007: Journal of Physical Chemistry. A
Chih-Wei Chang, Ying-Chih Lu, Tsai-Te Wang, Eric Wei-Guang Diau
Measurements of anisotropy of femtosecond fluorescence after direct excitation of the S1(n,pi*) state of azobenzene in hexane and ethylene glycol solutions have been carried out to address the controversy about inversion and rotation in the mechanism of photoisomerization. The observed anisotropies in hexane decay to a nonzero asymptotic level with a relaxation period the same as that for slow decay of the corresponding biexponential transient; this effect is attributed to involvement of the out-of-plane CNNC-torsional motion on approach to a twisted conical intersection along the "rotation channel" that depolarizes the original in-plane transition moment...
August 18, 2004: Journal of the American Chemical Society
Alessandro Cembran, Fernando Bernardi, Marco Garavelli, Laura Gagliardi, Giorgio Orlandi
In this paper, we identify the most efficient decay and isomerization route of the S(1), T(1), and S(0) states of azobenzene. By use of quantum chemical methods, we have searched for the transition states (TS) on the S(1) potential energy surface and for the S(0)/S(1) conical intersections (CIs) that are closer to the minimum energy path on the S(1). We found only one TS, at 60 degrees of CNNC torsion from the E isomer, which requires an activation energy of only 2 kcal/mol. The lowest energy CIs, lying also 2 kcal/mol above the S(1) minimum, were found on the torsion pathway for CNNC angles in the range 95-90 degrees...
March 17, 2004: Journal of the American Chemical Society
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"