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Principal components analysis

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https://www.readbyqxmd.com/read/27905932/adaptation-and-validation-of-the-instrument-clinical-learning-environment-and-supervision-for-medical-students-in-primary-health-care
#1
Eva Öhman, Hassan Alinaghizadeh, Päivi Kaila, Håkan Hult, Gunnar H Nilsson, Helena Salminen
BACKGROUND: Clinical learning takes place in complex socio-cultural environments that are workplaces for the staff and learning places for the students. In the clinical context, the students learn by active participation and in interaction with the rest of the community at the workplace. Clinical learning occurs outside the university, therefore is it important for both the university and the student that the student is given opportunities to evaluate the clinical placements with an instrument that allows evaluation from many perspectives...
December 1, 2016: BMC Medical Education
https://www.readbyqxmd.com/read/27905576/label-free-monitoring-of-tissue-biochemistry-following-traumatic-brain-injury-using-raman-spectroscopy
#2
Jakub Maciej Surmacki, Laura Ansel-Bollepalli, Francesca Pischiutta, Elisa R Zanier, Ari Ercole, Sarah Elizabeth Bohndiek
Traumatic brain injury (TBI) constitutes a major cause of death and long-term disability. At present, we lack methods to non-invasively track tissue biochemistry and hence select appropriate interventions for patients. We hypothesized that detailed label-free vibrational chemical analysis of focal TBI could provide such information. We assessed the early spatial and temporal changes in tissue biochemistry that are associated with brain injury in mice. Numerous differences were observed in the spectra of the contusion core and pericontusional tissue between 2 and 7 days...
December 1, 2016: Analyst
https://www.readbyqxmd.com/read/27904926/polychlorinated-biphenyl-bioaccumulation-patterns-among-lake-erie-lower-trophic-level-consumers-reflect-species-ecologies
#3
Jordan A Pitt, Ken G Drouillard, Gordon Paterson
Polychlorinated biphenyl (PCB) concentrations were quantified in lower trophic level consumers of the Lake Erie western basin food web to assess the capacity of PCBs to discriminate among trophically similar species inhabiting different compartments of the same ecosystem. Zooplankton were characterized by higher proportions of less chlorinated and hydrophobic homologs relative to zebra mussel (Dreissena polymorpha), mayfly (Hexagenia limbata) and emerald shiner (Notropis atherinoides) samples. PCB biota-sediment accumulation factors (BSAF) differed significantly among species with zebra mussels and emerald shiners having the highest BSAFs...
November 30, 2016: Bulletin of Environmental Contamination and Toxicology
https://www.readbyqxmd.com/read/27904637/development-and-initial-psychometric-evaluation-of-the-hospitalization-related-stressors-questionnaire-for-elderly-patients
#4
Zahra Musavi, Mousa Alavi, Nasrollah Alimohammadi, Habibollah Hosseini
BACKGROUND: Various factors threaten the health and recovery of hospitalized elderly, including stressors in medical service centers. Therefore, the aim of the present study was to develop and preliminary validate a measurement tool to assess hospitalization-related stressors (HRS) among the elderly. MATERIALS AND METHODS: This methodological research was conducted in 2015. The study was performed in two main phases. In the first phase, which was to develop the questionnaire, the data were collected through literature review, interview with few elderly patients, and calculating content validity index with the participation of 16 experts...
September 2016: Iranian Journal of Nursing and Midwifery Research
https://www.readbyqxmd.com/read/27904455/profiling-of-disease-related-metabolites-in-grapevine-internode-tissues-infected-with-agrobacterium-vitis
#5
Sung-Min Jung, Youn-Young Hur, John E Preece, Oliver Fiehn, Young-Ho Kim
Green shoot cuttings of 10 different grapevine species were inoculated with Agrobacterium vitis to find disease-related metabolites in the grapevine. Crown galls formed 60 days after inoculation varied in gall severity (GS) evaluated by gall incidence (GI) and gall diameter (GD), which were classified into three response types as RR (low GI and small GD), SR (high GI and small GD), and SS (high GI and large GD), corresponding to resistant, moderately resistant, and susceptible responses, respectively. In this, 4, 4, and 2 Vitis species were classified into RR, SR, and SS, respectively...
December 2016: Plant Pathology Journal
https://www.readbyqxmd.com/read/27904414/near-infrared-spectroscopic-analysis-of-total-phenolic-content-and-antioxidant-activity-of-berry-fruits
#6
Jasenka Gajdoš Kljusurić, Kiril Mihalev, Ivana Bečić, Ivana Polović, Mariya Georgieva, Senka Djaković, Želimir Kurtanjek
This study evaluates the feasibility of using near-infrared (NIR) spectroscopy as a rapid and environmentally friendly technique for validation and prediction of the total phenolic content (TPC) and antioxidant activity (AOA) indices (as 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging, inhibition time (IT) of the Briggs-Rauscher oscillating reaction, and relative antioxidant capacity (RAC)) of berry fruit extracts. The analysed berry samples originated from Croatia (blackberries, wild blueberries, raspberries, red currants and strawberries) and Bulgaria (wild blueberries, raspberries and strawberries)...
June 2016: Food Technology and Biotechnology
https://www.readbyqxmd.com/read/27904388/content-of-total-phenolics-flavan-3-ols-and-proanthocyanidins-oxidative-stability-and-antioxidant-capacity-of-chocolate-during-storage
#7
Jovanka Laličić-Petronijević, Draženka Komes, Stanislava Gorjanović, Ana Belščak-Cvitanović, Lato Pezo, Ferenc Pastor, Sanja Ostojić, Jovanka Popov-Raljić, Desanka Sužnjević
Antioxidant (AO) capacity of chocolates with 27, 44 and 75% cocoa was assessed after production and during twelve months of storage by direct current (DC) polarographic assay, based on the decrease of anodic current caused by the formation of hydroxo-perhydroxyl mercury(II) complex (HPMC) in alkaline solutions of hydrogen peroxide at potentials of mercury oxidation, and two spectrophotometric assays. Relative antioxidant capacity index (RACI) was calculated by taking the average value of the AO assay (the sample mass in all assays was identical)...
March 2016: Food Technology and Biotechnology
https://www.readbyqxmd.com/read/27903552/application-of-an-untargeted-chemometric-strategy-in-the-impurity-profiling-of-pharmaceuticals-an-example-of-amisulpride
#8
Robert Skibiński, Jakub Trawiński
The untargeted chemometric methodology for the impurity profiling of amisulpride pharmaceutical formulations was successfully applied and developed. For this purpose a fast, accurate and specific analytical method was elaborated with the use of ultra high pressure liquid chromatography coupled with high resolution hybrid electrospray ionization quadrupole time of flight mass spectrometer in a fast polarity switching mode. All the obtained chromatographic profiles were aligned and a multivariate chemometric analysis including principal component analysis and partial least square (PLS) was performed...
November 29, 2016: Journal of Chromatographic Science
https://www.readbyqxmd.com/read/27903527/standardized-flow-cytometry-for-highly-sensitive-mrd-measurements-in-b-cell-acute-lymphoblastic-leukemia
#9
Prisca Theunissen, Ester Mejstrikova, Lukasz Sedek, Alita J van der Sluijs-Gelling, Giuseppe Gaipa, Marius Bartels, Elaine Sobral da Costa, Michaela Kotrov Aacute, Michaela Novakova, Edwin Sonneveld, Chiara Buracchi, Paola Bonaccorso, Elen Oliviera, Jeroen G Te Marvelde, Tomasz Szczepanski, Ludovic Lhermitte, Ondrej Hrusak, Quentin Lecrevisse, Georgiana Emilia Grigore, Eva Fronkov Aacute, Jan Trka, Monika Brüggemann, Alberto Orfao, Jacques J M van Dongen, Vincent H J van der Velden
A fully-standardized EuroFlow 8-color antibody panel and laboratory procedure was stepwise designed to measure minimal residual disease (MRD) in B-cell precursor (BCP) acute lymphoblastic leukemia (ALL) patients with a sensitivity of ≤10(-5), comparable to real-time quantitative (RQ)-PCR-based MRD detection via antigen-receptor rearrangements. Leukocyte markers and the corresponding antibodies and fluorochromes were selected based on their contribution in separating BCP-ALL cells from normal/regenerating BCP cells in multidimensional principal component analyses...
November 30, 2016: Blood
https://www.readbyqxmd.com/read/27903314/pudong-white-pig-a-unique-genetic-resource-disclosed-by-sequencing-data
#10
Q Xiao, Z Zhang, H Sun, Q Wang, Y Pan
Pudong White (PW) pigs are distributed in the Taihu region of China and are characterized by their completely white coats. A heated debate concerning this genetic resource and its relationship to Taihu and western pig breeds has arisen, due to the white coat of the animals. To determine whether PW is a unique genetic resource, we performed a detailed assessment of the genetic relationships among PW, six breeds from the Taihu population and three western pig breeds, based on whole-genome single nucleotide polymorphism (SNP) data...
December 1, 2016: Animal: An International Journal of Animal Bioscience
https://www.readbyqxmd.com/read/27901114/genome-wide-diversity-and-association-mapping-for-capsaicinoids-and-fruit-weight-in-capsicum-annuum-l
#11
Padma Nimmakayala, Venkata L Abburi, Thangasamy Saminathan, Suresh B Alaparthi, Aldo Almeida, Brittany Davenport, Marjan Nadimi, Joshua Davidson, Krittika Tonapi, Lav Yadav, Sridhar Malkaram, Gopinath Vajja, Gerald Hankins, Robert Harris, Minkyu Park, Doil Choi, John Stommel, Umesh K Reddy
Accumulated capsaicinoid content and increased fruit size are traits resulting from Capsicum annuum domestication. In this study, we used a diverse collection of C. annuum to generate 66,960 SNPs using genotyping by sequencing. The study identified 1189 haplotypes containing 3413 SNPs. Length of individual linkage disequilibrium (LD) blocks varied along chromosomes, with regions of high and low LD interspersed with an average LD of 139 kb. Principal component analysis (PCA), Bayesian model based population structure analysis and an Euclidean tree built based on identity by state (IBS) indices revealed that the clustering pattern of diverse accessions are in agreement with capsaicin content (CA) and fruit weight (FW) classifications indicating the importance of these traits in shaping modern pepper genome...
November 30, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27900789/a-general-approach-to-testing-for-pleiotropy-with-rare-and-common-variants
#12
Sharon M Lutz, Tasha E Fingerlin, John E Hokanson, Christoph Lange
Through genome-wide association studies, numerous genes have been shown to be associated with multiple phenotypes. To determine the overlap of genetic susceptibility of correlated phenotypes, one can apply multivariate regression or dimension reduction techniques, such as principal components analysis, and test for the association with the principal components of the phenotypes rather than the individual phenotypes. However, as these approaches test whether there is a genetic effect for at least one of the phenotypes, a significant test result does not necessarily imply pleiotropy...
November 30, 2016: Genetic Epidemiology
https://www.readbyqxmd.com/read/27900722/atmospheric-deposition-of-pbdes-and-dps-in-dongjiang-river-basin-south-china
#13
Xiaowei Wu, Yan Wang, Minmin Hou, Chunling Luo, Hongxia Zhao, Gan Zhang
The atmospheric deposition fluxes of polybrominated diphenyl ethers (PBDEs) and Dechlorane Plus (DPs) in Dongjiang River Basin of the Pearl River Delta in South China were investigated during winter and summer, respectively. The total deposition fluxes varied from 4.74 to 27.0 ng/m(2)/day for PBDEs and 8.77 to 206 ng/m(2)/day for DPs, respectively. The fractions of anti-DP to the total DPs (f anti) varied from 0.28 to 0.63 (mean = 0.43 ± 0.06), i.e., generally lower than those in commercial products, which might be attributed to the different environmental fates of the two isomers...
November 30, 2016: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/27900625/a-comparison-of-trace-metal-bioaccumulation-and-distribution-in-typha-latifolia-and-phragmites-australis-implication-for-phytoremediation
#14
Agnieszka Klink
The aims of the present investigation were to reveal various trace metal accumulation abilities of two common helophytes Typha latifolia and Phragmites australis and to investigate their potential use in the phytoremediation of environmental metal pollution. The concentrations of Fe, Mn, Zn, Cu, Cd, Pb and Ni were determined in roots, rhizomes, stems and leaves of both species studied as well as in corresponding water and bottom sediments from 19 sites selected within seven lakes in western Poland (Leszczyńskie Lakeland)...
November 29, 2016: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/27900624/the-sources-of-trace-element-pollution-of-dry-depositions-nearby-a-drinking-water-source
#15
Xinyue Guo, Hongbing Ji, Cai Li, Yang Gao, Huaijian Ding, Lei Tang, Jinguo Feng
Miyun Reservoir is one of the most important drinking water sources for Beijing. Thirteen atmospheric PM sampling sites were established around this reservoir to analyze the mineral composition, morphological characteristics, element concentration, and sources of atmospheric PM pollution, using transmission electron microscope, X-ray diffraction, and inductively coupled plasma mass spectrometry analyses. The average monthly dry deposition flux of aerosols was 15.18 g/m(2), with a range of 5.78-47.56 g/m(2)...
November 29, 2016: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/27898967/genomewide-association-analysis-of-growth-traits-in-charolais-beef-cattle
#16
F J Jahuey-Martínez, G M Parra-Bracamonte, A M Sifuentes-Rincón, J C Martínez-González, C Gondro, C A García-Pérez, L A López-Bustamante
The objective of this study was to perform a genomewide association study (GWAS) for growth traits in Charolais beef cattle and to identify SNP markers and genes associated with these traits. Our study included 855 animals genotyped using 76,883 SNP from the GeneSeek Genomic Profiler Bovine HD panel. The examined phenotypic data included birth, weaning, and yearling weights as well as pre- and postweaning ADG. After quality control, 68,337 SNP and 823 animals were retained in the analysis. The association analysis was performed using the principal components method via the egscore function of the GenABEL version 1...
November 2016: Journal of Animal Science
https://www.readbyqxmd.com/read/27898838/assessment-of-cultivar-distinctness-in-alfalfa-a-comparison-of-genotyping-by-sequencing-simple-sequence-repeat-marker-and-morphophysiological-observations
#17
Paolo Annicchiarico, Nelson Nazzicari, Acharya Ananta, Maria Carelli, Yanling Wei, E Charles Brummer
Cultivar registration agencies typically require morphophysiological trait-based distinctness of candidate cultivars. This requirement is difficult to achieve for cultivars of major perennial forages because of their genetic structure and ever-increasing number of registered material, leading to possible rejection of agronomically valuable cultivars. This study aimed to explore the value of molecular markers applied to replicated bulked plants (three bulks of 100 independent plants each per cultivar) to assess alfalfa ( L...
July 2016: Plant Genome
https://www.readbyqxmd.com/read/27898568/whole-exome-sequencing-to-identify-novel-biological-pathways-associated-with-infertility-after-pelvic-inflammatory-disease
#18
Brandie D Taylor, Xiaojing Zheng, Toni Darville, Wujuan Zhong, Kranti Konganti, Olayinka Abiodun-Ojo, Roberta B Ness, Catherine M O'Connell, Catherine L Haggerty
BACKGROUND: Ideal management of sexually transmitted infections (STI) may require risk markers for pathology or vaccine development. Previously, we identified common genetic variants associated with chlamydial pelvic inflammatory disease (PID) and reduced fecundity. As this explains only a proportion of the long-term morbidity risk, we used whole-exome sequencing to identify biological pathways that may be associated with STI-related infertility. METHODS: We obtained stored DNA from 43 non-Hispanic black women with PID from the PID Evaluation and Clinical Health Study...
November 28, 2016: Sexually Transmitted Diseases
https://www.readbyqxmd.com/read/27898459/characterization-of-the-adverse-effects-induced-by-acetaminophen-and-non-steroidal-anti-inflammatory-drugs-based-on-the-analysis-of-the-japanese-adverse-drug-event-report-database
#19
Junko Nagai, Yoshihiro Uesawa, Ryotaro Shimamura, Hajime Kagaya
OBJECTIVES: Acetaminophen and non-steroidal anti-inflammatory drugs (NSAIDs) are antipyretic analgesics with established adverse effects; however, only a few studies have compared their adverse effects simultaneously. We aimed to compare the adverse effects of these medications to confirm the respective frequencies of both rare and major adverse effects. METHODS: We used a high-quality database for spontaneous adverse drug event reporting in Japan. Data were extracted regarding the adverse effects of acetaminophen and NSAIDs to compare the tendency of the appearance of those adverse effects between the drugs...
November 24, 2016: Clinical Journal of Pain
https://www.readbyqxmd.com/read/27898032/the-antiproliferative-effect-of-chakasaponins-i-and-ii-floratheasaponin-a-and-epigallocatechin-3-o-gallate-isolated-from-camellia-sinensis-on-human-digestive-tract-carcinoma-cell-lines
#20
Niichiro Kitagawa, Toshio Morikawa, Chiaki Motai, Kiyofumi Ninomiya, Shuhei Okugawa, Ayaka Nishida, Masayuki Yoshikawa, Osamu Muraoka
Acylated oleanane-type triterpene saponins, namely chakasaponins I (1) and II (2), floratheasaponin A (3), and their analogs, together with catechins-including (-)-epigallocatechin 3-O-gallate (4), flavonoids, and caffeine-have been isolated as characteristic functional constituents from the extracts of "tea flower", the flower buds of Camellia sinensis (Theaceae), which have common components with that of the leaf part. These isolates exhibited antiproliferative activities against human digestive tract carcinoma HSC-2, HSC-4, MKN-45, and Caco-2 cells...
November 26, 2016: International Journal of Molecular Sciences
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