keyword
https://read.qxmd.com/read/38647859/comparison-of-three-viral-nucleic-acid-preamplification-pipelines-for-sewage-viral-metagenomics
#1
JOURNAL ARTICLE
Xavier Fernandez-Cassi, Tamar Kohn
Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its effective use in disease surveillance. In this study, we investigated the performance of three different preamplification pipelines (specific to RNA viruses, DNA viruses or both) for viral genome sequencing using spiked-in Phosphate Buffered Saline and sewage samples containing known concentrations of viruses. We found that compared to the pipeline targeting all genome types, the RNA pipeline performed better in detecting RNA viruses in both spiked and unspiked sewage samples, allowing the detection of various mammalian viruses including members from the Reoviridae, Picornaviridae, Astroviridae and Caliciviridae...
April 22, 2024: Food and Environmental Virology
https://read.qxmd.com/read/38647701/role-of-the-medial-agranular-cortex-in-unilateral-spatial-neglect
#2
JOURNAL ARTICLE
Daisuke Ishii, Hironobu Osaki, Arito Yozu, Tatsuya Yamamoto, Satoshi Yamamoto, Mariko Miyata, Yutaka Kohno
Unilateral spatial neglect (USN) results from impaired attentional networks and can affect various sensory modalities, such as visual and somatosensory. The rodent medial agranular cortex (AGm), located in the medial part of the forebrain from rostral to caudal direction, is considered a region associated with spatial attention. The AGm selectively receives multisensory input with the rostral AGm receiving somatosensory input and caudal part receiving visual input. Our previous study showed slower recovery from neglect with anterior AGm lesion using the somatosensory neglect assessment...
April 22, 2024: Experimental Brain Research. Experimentelle Hirnforschung. Expérimentation Cérébrale
https://read.qxmd.com/read/38647411/biophysical-insights-into-the-dimer-formation-of-human-sirtuin-2
#3
JOURNAL ARTICLE
Noa Suzuki, Tsuyoshi Konuma, Takahisa Ikegami, Satoko Akashi
Sirtuin 2 (SIRT2) is a class III histone deacetylase that is highly conserved from bacteria to mammals. We prepared and characterized the wild-type (WT) and mutant forms of the histone deacetylase (HDAC) domain of human SIRT2 (hSIRT2) using various biophysical methods and evaluated their deacetylation activity. We found that WT hSIRT2 HDAC (residues 52-357) forms a homodimer in a concentration-dependent manner with a dimer-monomer dissociation constant of 8.3 ± 0.5 μM, which was determined by mass spectrometry...
May 2024: Protein Science
https://read.qxmd.com/read/38647387/monomethyl-auristatin-e-mmae-a-payload-for-multiple-antibody-drug-conjugates-adcs-demonstrates-differential-red-blood-cell-partitioning-across-human-and-animal-species
#4
JOURNAL ARTICLE
Victor Yip, Ola M Saad, Doug Leipold, Chunze Li, Amrita Kamath, Ben-Quan Shen
Background: Monomethyl auristatin E (MMAE) has been used as a payload for several Food and Drug Administration (FDA) approved antibody-drug conjugates (ADCs). It is known that MMAE is released from the ADC following binding, internalization and proteolytic degradation in target tissues. A striking discrepancy in systemic MMAE levels has been observed across species with 50-fold higher MMAE levels in human than that in rodents when normalized by ADC dose with unknown mechanism. Hypothesis and purpose: Multiple factors could affect systemic MMAE levels such as production and elimination of unconjugated MMAE following ADC dosing...
April 22, 2024: Xenobiotica; the Fate of Foreign Compounds in Biological Systems
https://read.qxmd.com/read/38647323/analysis-of-electrocardiograms-and-behavior-in-mice-from-pregnancy-to-lactation-period
#5
JOURNAL ARTICLE
Kie Shimizu, Sayaka Kuze-Arata, Takefumi Kikusui, Kazutaka Mogi
Changes in the mother-offspring relationship are presumably accompanied by dynamic changes in the autonomic nervous system. Although temporal measurements of autonomic activity have been performed in human mothers and infants, the analysis of long-term changes remains unexplored. Mouse mothers can form social bonds with their pups and have a short period of pregnancy and lactation, which makes them useful for the examination of physiological changes from pregnancy to pup-rearing. Therefore, a telemetry system was used for several weeks to measure the changes in the autonomic nervous system and the behavior of mouse mothers...
April 5, 2024: Journal of Visualized Experiments: JoVE
https://read.qxmd.com/read/38647261/laws-governing-access-to-sexual-health-services-and-information-contents-protections-and-restrictions
#6
JOURNAL ARTICLE
Laura Ferguson, Sarah Emoto, Sofia Gruskin
Access to sexual health services and information is critical to achieving the highest attainable standard of sexual health, and enabling legal environments are key to advancing progress in this area. In determining overall alignment with human rights standards to respect, protect, and fulfil sexual health-related rights without discrimination, there are many aspects of laws, including their specificity and content, which impact which sexual health services and information are availed, which are restricted, and for whom...
December 2024: Sexual and reproductive health matters
https://read.qxmd.com/read/38647163/tumor-associated-macrophages-and-tumor-infiltrating-lymphocytes-in-canine-cutaneous-and-subcutaneous-mast-cell-tumors
#7
JOURNAL ARTICLE
Luca Bertola, Benedetta Pellizzoni, Chiara Giudice, Valeria Grieco, Roberta Ferrari, Lavinia E Chiti, Damiano Stefanello, Martina Manfredi, Donatella De Zani, Camilla Recordati
Cutaneous and subcutaneous mast cell tumors (MCTs) are common canine neoplasms characterized by variable biological behavior. Tumor-associated macrophages (TAMs) and tumor-infiltrating lymphocytes (TILs) can be effective prognostic markers in numerous human neoplasms and are increasingly investigated in dogs. The aim of this study was to characterize immune cells in canine MCTs and their relationship with histological location (cutaneous, subcutaneous) and histologic nodal metastatic status (HN0-3). Thirty-eight MCTs (26 cutaneous, 12 subcutaneous) from 33 dogs with known sentinel lymph node (SLN) metastatic status were immunolabeled for Iba1 (macrophages), CD20 (B cells), CD3 (T cells), and Foxp3 (regulatory T cells)...
April 22, 2024: Veterinary Pathology
https://read.qxmd.com/read/38647022/the-interplay-between-crystallinity-and-the-levels-of-zn-and-carbonate-in-synthetic-microcalcifications-directs-thyroid-cell-malignancy
#8
JOURNAL ARTICLE
Lotem Gotnayer Lilian, Yarden Nahmias, Gabriel Yazbek Grobman, Lonia Friedlander, Dina Aranovich, Uri Yoel, Netta Vidavsky
One of the key challenges in diagnosing thyroid cancer lies in the substantial percentage of indeterminate diagnoses of thyroid nodules that have undergone ultrasound-guided fine-needle aspiration (FNA) biopsy for cytological evaluation. This delays the definitive diagnosis and treatment plans. We recently demonstrated that hydroxyapatite microcalcifications (MCs) aspirated from thyroid nodules may aid nodule diagnosis based on their composition. In particular, Zn-enriched MCs have emerged as potential cancer biomarkers...
April 22, 2024: Journal of Materials Chemistry. B, Materials for Biology and Medicine
https://read.qxmd.com/read/38646516/generative-retrieval-augmented-ontologic-graph-and-multiagent-strategies-for-interpretive-large-language-model-based-materials-design
#9
JOURNAL ARTICLE
Markus J Buehler
Transformer neural networks show promising capabilities, in particular for uses in materials analysis, design, and manufacturing, including their capacity to work effectively with human language, symbols, code, and numerical data. Here, we explore the use of large language models (LLMs) as a tool that can support engineering analysis of materials, applied to retrieving key information about subject areas, developing research hypotheses, discovery of mechanistic relationships across disparate areas of knowledge, and writing and executing simulation codes for active knowledge generation based on physical ground truths...
April 17, 2024: ACS Eng Au
https://read.qxmd.com/read/38646363/the-effects-of-diet-intervention-on-the-gut-microbiota-in-type-2-diabetes-mellitus-a-systematic-review
#10
REVIEW
Kiana Farahbod, Ethan Slouha, Andrew Gerts, Atbeen Rezazadah, Lucy A Clunes, Theofanis F Kollias
The GI tract hosts a dynamic community known as the gut microbiota, which encompasses thriving bacteria that actively contribute to the physiological functions of the human body. The intricacies of its composition are profoundly influenced by dietary preferences, where the quality, quantity, and frequency of food consumption play a pivotal role in either fostering or impeding specific bacterial strains. Type 2 diabetes mellitus (T2DM) is a prevalent and deleterious condition that originates from excessive hyperglycemia...
March 2024: Curēus
https://read.qxmd.com/read/38646326/computational-analysis-of-single-nucleotide-polymorphisms-in-human-hic1-gene
#11
JOURNAL ARTICLE
Arora Annanya, Boopathi Priyadharshini, Vasugi Suresh, Elangovan Dilipan
Background A putative tumor suppressor gene called HIC1 (hypermethylated in cancer) is situated at 17p13.3, a locus where the allelic loss occurs often in human malignancies, including breast cancer. Hypermethylated in cancer 1 protein is a protein that in humans is encoded by the HIC1 gene and it's a  Homo sapiens  (Human). This gene functions as a growth regulatory and tumor repressor gene. The molecular function of HIC1 gene includes DNA-binding transcription factor activity, sequence-specific DNA binding, DNA binding, histone deacetylase binding, protein binding, metal ion binding, nucleic acid binding, DNA-binding transcription repressor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, RNA polymerase II-specific...
March 2024: Curēus
https://read.qxmd.com/read/38646097/comprehensive-evaluation-framework-for-intervention-on-health-effects-of-ambient-temperature
#12
REVIEW
Jiaming Wang, Peng Wang, Beibei Liu, Patrick L Kinney, Lei Huang, Kai Chen
Despite the existence of many interventions to mitigate or adapt to the health effects of climate change, their effectiveness remains unclear. Here, we introduce the Comprehensive Evaluation Framework for Intervention on Health Effects of Ambient Temperature to evaluate study designs and effects of intervention studies. The framework comprises three types of interventions: proactive, indirect, and direct, and four categories of indicators: classification, methods, scope, and effects. We trialed the framework by an evaluation of existing intervention studies...
June 2024: Eco Environ Health
https://read.qxmd.com/read/38645672/the-importance-of-both-individual-differences-and-dyadic-processes-in-children-s-emotion-expression
#13
JOURNAL ARTICLE
Julie A Hubbard, Christina C Moore, Lindsay Zajac, Elizabeth Marano, Megan K Bookhout, Mary Dozier
Although children display strong individual differences in emotion expression, they also engage in emotional synchrony or reciprocity with interaction partners. To understand this paradox between trait-like and dyadic influences, the goal of the current study was to investigate children's emotion expression using a Social Relations Model (SRM) approach. Playgroups consisting typically of four same-sex unfamiliar nine-year-old children ( N = 202) interacted in a round-robin format (6 dyads per group). Each dyad completed two 5-minute tasks, a challenging frustration task and a cooperative planning task...
2024: Applied Developmental Science
https://read.qxmd.com/read/38645623/strong-prediction-language-model-surprisal-explains-multiple-n400-effects
#14
JOURNAL ARTICLE
James A Michaelov, Megan D Bardolph, Cyma K Van Petten, Benjamin K Bergen, Seana Coulson
Theoretical accounts of the N400 are divided as to whether the amplitude of the N400 response to a stimulus reflects the extent to which the stimulus was predicted, the extent to which the stimulus is semantically similar to its preceding context, or both. We use state-of-the-art machine learning tools to investigate which of these three accounts is best supported by the evidence. GPT-3, a neural language model trained to compute the conditional probability of any word based on the words that precede it, was used to operationalize contextual predictability...
2024: Neurobiology of language
https://read.qxmd.com/read/38645598/optimal-design-of-bone-tumor-ablation-device-based-on-radio-frequency-heating-using-taguchi-method
#15
JOURNAL ARTICLE
Gyoung Jun Lee, Sangrok Jin, Min Wook Joo
This study investigated the optimal design of a radio-frequency (RF) bone tumor ablation device to achieve uniform heating. In a previous study, we confirmed the feasibility of this device, which could heat all regions of the bone to 70 °C or higher and maintain this temperature for more than 30 min. However, the temperature in each part was non-uniform. To address this issue, the shape of the electrode must be modified to create a uniform electric field. The design of the electrode was optimized to reduce temperature deviations...
May 2024: Biomedical Engineering Letters
https://read.qxmd.com/read/38645361/investigating-the-protein-based-therapeutic-relationship-between-honey-protein-shp-60-and-bevacizumab-on-angiogenesis-exploring-the-synergistic-effect-through-in-vitro-and-in-silico-analysis
#16
JOURNAL ARTICLE
Mohsin Wahid, Meshal Nazeer, Abdul Qadir, Muhammad Bilal Azmi
Honey is a natural product produced by honeybees, which has been used not only as food but also as a medicine by humans for thousands of years. In this study, 60 kDa protein was purified from Pakistani Sidr honey named as SHP-60 (Sidr Honey Protein-60), and its antioxidant potential and the effect of Bevacizumab with purified protein on in vitro angiogenesis using human umbilical vein endothelial cells (HUVEC) were investigated. We further validated the molecular protein-protein (SHP-60 with Bevacizumab) interactions through in silico analysis...
April 16, 2024: ACS Omega
https://read.qxmd.com/read/38645237/reward-circuit-local-field-potential-modulations-precede-risk-taking
#17
Natasha C Hughes, Helen Qian, Michael Zargari, Zixiang Zhao, Balbir Singh, Zhengyang Wang, Jenna N Fulton, Graham W Johnson, Rui Li, Benoit M Dawant, Dario J Englot, Christos Constantinidis, Shawniqua Williams Roberson, Sarah K Bick
Risk taking behavior is a symptom of multiple neuropsychiatric disorders and often lacks effective treatments. Reward circuitry regions including the amygdala, orbitofrontal cortex, insula, and anterior cingulate have been implicated in risk-taking by neuroimaging studies. Electrophysiological activity associated with risk taking in these regions is not well understood in humans. Further characterizing the neural signalling that underlies risk-taking may provide therapeutic insight into disorders associated with risk-taking...
April 11, 2024: bioRxiv
https://read.qxmd.com/read/38645226/circadian-rhythms-tied-to-changes-in-brain-morphology-in-a-densely-sampled-male
#18
Elle M Murata, Laura Pritschet, Hannah Grotzinger, Caitlin M Taylor, Emily G Jacobs
UNLABELLED: Circadian, infradian, and seasonal changes in steroid hormone secretion have been tied to changes in brain volume in several mammalian species. However, the relationship between circadian changes in steroid hormone production and rhythmic changes in brain morphology in humans is largely unknown. Here, we examined the relationship between diurnal fluctuations in steroid hormones and multiscale brain morphology in a precision imaging study of a male who completed forty MRI and serological assessments at 7 A...
April 14, 2024: bioRxiv
https://read.qxmd.com/read/38645206/simultaneous-detection-of-pathogens-and-antimicrobial-resistance-genes-with-the-open-source-cloud-based-cz-id-pipeline
#19
Dan Lu, Katrina L Kalantar, Victoria T Chu, Abigail L Glascock, Estella S Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, Karyna Rosario, Jennifer Tang, Omar Valenzuela, Peter M Mourani, Amy J Pickering, Amogelang R Raphenya, Brian P Alcock, Andrew G McArthur, Charles R Langelier
Antimicrobial resistant (AMR) pathogens represent urgent threats to human health, and their surveillance is of paramount importance. Metagenomic next generation sequencing (mNGS) has revolutionized such efforts, but remains challenging due to the lack of open-access bioinformatics tools capable of simultaneously analyzing both microbial and AMR gene sequences. To address this need, we developed the Chan Zuckerberg ID (CZ ID) AMR module, an open-access, cloud-based workflow designed to integrate detection of both microbes and AMR genes in mNGS and whole-genome sequencing (WGS) data...
April 18, 2024: bioRxiv
https://read.qxmd.com/read/38645197/macro-and-micro-structural-alterations-in-the-midbrain-in-early-psychosis
#20
Zicong Zhou, Kylie Jones, Elena I Ivleva, Luis Colon-Perez
INTRODUCTION: Early psychosis (EP) is a critical period in the course of psychotic disorders during which the brain is thought to undergo rapid and significant functional and structural changes 1 . Growing evidence suggests that the advent of psychotic disorders is early alterations in the brain's functional connectivity and structure, leading to aberrant neural network organization. The Human Connectome Project (HCP) is a global effort to map the human brain's connectivity in healthy and disease populations; within HCP, there is a specific dataset that focuses on the EP subjects (i...
April 14, 2024: bioRxiv
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