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https://www.readbyqxmd.com/read/28730365/cd-pb-and-zn-mobility-and-bio-availability-in-contaminated-soils-from-a-former-smelting-site-amended-with-biochar
#1
Tonia Lomaglio, Nour Hattab-Hambli, Florie Miard, Manhattan Lebrun, Romain Nandillon, Dalila Trupiano, Gabriella Stefania Scippa, Arnaud Gauthier, Mikael Motelica-Heino, Sylvain Bourgerie, Domenico Morabito
Biochar is a potential candidate for the remediation of metal(loid)-contaminated soils. However, the mechanisms of contaminant-biochar retention and release depend on the amount of soil contaminants and physicochemical characteristics, as well as the durability of the biochar contaminant complex, which may be related to the pyrolysis process parameters. The objective of the present study was to evaluate, in a former contaminated smelting site, the impact of two doses of wood biochar (2 and 5% w/w) on metal immobilization and/or phytoavailability and their effectiveness in promoting plant growth in mesocosm experiments...
July 20, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28729876/genetic-architecture-of-flooding-tolerance-in-the-dry-bean-middle-american-diversity-panel
#2
Ali Soltani, Samira MafiMoghaddam, Katelynn Walter, Daniel Restrepo-Montoya, Sujan Mamidi, Stephan Schroder, Rian Lee, Phillip E McClean, Juan M Osorno
Flooding is a devastating abiotic stress that endangers crop production in the twenty-first century. Because of the severe susceptibility of common bean (Phaseolus vulgaris L.) to flooding, an understanding of the genetic architecture and physiological responses of this crop will set the stage for further improvement. However, challenging phenotyping methods hinder a large-scale genetic study of flooding tolerance in common bean and other economically important crops. A greenhouse phenotyping protocol was developed to evaluate the flooding conditions at early stages...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28721334/draft-genome-sequence-of-bradyrhizobium-paxllaeri-lmtr-21-t-isolated-from-lima-bean-phaseolus-lunatus-in-peru
#3
Ernesto Ormeño-Orrillo, Luis Rey, David Durán, Carlos A Canchaya, Marco A Rogel, Doris Zúñiga-Dávila, Juan Imperial, Tomás Ruiz-Argüeso, Esperanza Martínez-Romero
Bradyrhizobium paxllaeri is a prevalent species in root nodules of the Lima bean (Phaseolus lunatus) in Peru. LMTR 21(T) is the type strain of the species and was isolated from a root nodule collected in an agricultural field in the Peruvian central coast. Its 8.29 Mbp genome encoded 7635 CDS, 71 tRNAs and 3 rRNAs genes. All genes required to stablish a nitrogen-fixing symbiosis with its host were present. The draft genome sequence and annotation have been deposited at GenBank under the accession number MAXB00000000...
September 2017: Genomics Data
https://www.readbyqxmd.com/read/28711666/micrornas-associated-with-drought-response-in-the-pulse-crop-common-bean-phaseolus-vulgaris-l
#4
Jing Wu, Lanfen Wang, Shumin Wang
Drought stress significantly reduces common bean yields. Recently, some drought-related miRNAs were found in various plants. However, reports of miRNAs involved in drought stress in common bean are limited. Here, we obtained four sRNA samples from drought-tolerant and -sensitive cultivars of common bean that experienced with or without drought treatment. A total of 49 novel miRNAs and 120 known miRNAs were detected. Under drought treatment, 9 and 7 known miRNAs were down and up-regulated, respectively, and 5 and 3 of the novel miRNAs were increased and decreased, respectively...
July 12, 2017: Gene
https://www.readbyqxmd.com/read/28707727/in-vitro-renin-angiotensin-system-inhibition-and-in-vivo-antihypertensive-activity-of-peptide-fractions-from-lima-bean-phaseolus-lunatus-l
#5
Norma A Ciau-Solís, Juan J Acevedo-Fernández, David Betancur-Ancona
BACKGROUND: The renin-angiotensin system is key in the physiopathology of arterial hypertension because it converts angiotensin I, via angiotensin I-converting enzyme (ACE), into angiotensin II. In vitro analyses were done of the ACE-inhibitory and renin-inhibitory activities of peptide fractions isolated by enzymatic hydrolysis of Lima bean (Phaseolus lunatus) protein. Antihypertensive activity was confirmed in vivo using a rat model. RESULTS: Lima bean protein was hydrolyzed with one of two sequential enzymatic systems (pepsin-pancreatin or Alcalase®-Flavourzyme®)...
July 14, 2017: Journal of the Science of Food and Agriculture
https://www.readbyqxmd.com/read/28702356/genome-sequence-of-bradyrhizobium-sp-lmtr-3-a-diazotrophic-symbiont-of-lima-bean-phaseolus-lunatus
#6
Ernesto Ormeño-Orrillo, Luis Rey, David Durán, Carlos A Canchaya, Doris Zúñiga-Dávila, Juan Imperial, Esperanza Martínez-Romero, Tomás Ruiz-Argüeso
Bradyrhizobium sp. LMTR 3 is a representative strain of one of the geno(species) of diazotrophic symbionts associated with Lima bean (Phaseolus lunatus) in Peru. Its 7.83 Mb genome was sequenced using the Illumina technology and found to encode a complete set of genes required for nodulation and nitrogen fixation, and additional genes putatively involved in root colonization. Its draft genome sequence and annotation have been deposited at GenBank under the accession number MAXC00000000.
September 2017: Genomics Data
https://www.readbyqxmd.com/read/28701815/next-generation-crop-models-a-modular-approach-to-model-early-vegetative-and-reproductive-development-of-the-common-bean-phaseolus-vulgaris-l
#7
C Hwang, M J Correll, S A Gezan, L Zhang, M S Bhakta, C E Vallejos, K J Boote, J A Clavijo-Michelangeli, J W Jones
The next generation of gene-based crop models offers the potential of predicting crop vegetative and reproductive development based on genotype and weather data as inputs. Here, we illustrate an approach for developing a dynamic modular gene-based model to simulate changes in main stem node numbers, time to first anthesis, and final node number on the main stem of common bean (Phaseolus vulgaris L.). In the modules, these crop characteristics are functions of relevant genes (quantitative trait loci (QTL)), the environment (E), and QTL × E interactions...
July 2017: Agricultural Systems
https://www.readbyqxmd.com/read/28701622/effects-on-glycocalyx-structures-of-frozen-thawed-bovine-sperm-induced-by-flow-cytometry-and-artificial-capacitation
#8
Kohei Umezu, Yuuki Hiradate, Takashi Numabe, Kenshiro Hara, Kentaro Tanemura
Sperm sorting by flow cytometry is a useful technology in the bovine industry, but the conception rates after artificial insemination using sex-sorted sperm are lower than when using the un-sorted sperm. In this study, we have investigated the causes for these low conception rates. We have focused on changes caused by flow cytometry to the glycocalyx, which forms the outermost surface of the sperm membrane. We have also evaluated the effects of capacitation on the glycocalyx since capacitation involves a redistribution of the sperm membrane that is vital for successful fertilization and conception...
July 13, 2017: Journal of Reproduction and Development
https://www.readbyqxmd.com/read/28694440/phylogenomic-analysis-of-mkks-and-mapks-from-16-legumes-and-detection-of-interacting-pairs-in-chickpea-divulge-mapk-signalling-modules
#9
Savithri Purayannur, Kamal Kumar, Vemula Chandra Kaladhar, Praveen Kumar Verma
The mitogen-activated protein kinase (MAPK)-mediated phosphorylation cascade is a vital component of plant cellular signalling. Despite this, MAPK signalling cascade is less characterized in crop legumes. To fill this void, we present here a comprehensive phylogeny of MAPK kinases (MKKs) and MAPKs identified from 16 legume species belonging to genistoid (Lupinus angustifolius), dalbergioid (Arachis spp.), phaseoloid (Glycine max, Cajanus cajan, Phaseolus vulgaris, and Vigna spp.), and galegoid (Cicer arietinum, Lotus japonicus, Medicago truncatula, Pisum sativum, Trifolium spp...
July 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28693200/sorafenib-induced-alteration-of-protein-glycosylation-in-hepatocellular-carcinoma-cells
#10
Tianhua Liu, Riqiang Liu, Shu Zhang, Kun Guo, Qinle Zhang, Wei Li, Yinkun Liu
Sorafenib is a multikinase inhibitor and is effective in treating hepatocellular carcinoma (HCC). However, it remains unknown whether sorafenib induces the alteration of protein glycosylation. The present study treated HCC MHCC97L and MHCC97H cells with a 50% inhibitory concentration of sorafenib. Following this treatment, alteration of protein glycosylation was detected using a lectin microarray. Compared with the controls, the binding capacity of glycoproteins extracted from sorafenib-treated HCC cells to the lectins Bauhinia purpurea lectin, Dolichos biflorus agglutinin, Euonymus europaeus lectin, Helix aspersa lectin, Helix pomatia lectin, Jacalin, Maclura pomifera lectin and Vicia villosa lectin were enhanced; while, the binding capacities to the lectins Caragana arborescens lectin, Lycopersicon esculentum lectin, Limulus polyphemus lectin, Maackia amurensis lecin I, Phaseolus vulgaris leucoagglutinin, Ricinus communis agglutinin 60, Sambucus nigra lectin and Solanum tuberosum lectin were reduced (spot intensity median/background intensity median ≥2, P<0...
July 2017: Oncology Letters
https://www.readbyqxmd.com/read/28681292/biochars-mitigate-greenhouse-gas-emissions-and-bioaccumulation-of-potentially-toxic-elements-and-arsenic-speciation-in-phaseolus-vulgaris-l
#11
Muhammad Ibrahim, Gang Li, Sardar Khan, Qiaoqiao Chi, Yaoyang Xu
Anthropogenic and natural activities can lead to increased greenhouse gas emissions and discharge of potentially toxic elements (PTEs) into soil environment. Biochar amendment to soils is a cost-effective technology and sustainable approach used to mitigate greenhouse gas emissions, improve phytoremediation, and minimize the health risks associated with consumption of PTE-contaminated vegetables. Greenhouse pot experiments were conducted to investigate the effects of peanut shell biochar (PNB) and sewage sludge biochar (SSB) on greenhouse gas (GHG) emissions, plant growth, PTE bioaccumulation, and arsenic (As) speciation in bean plants...
July 5, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28666835/the-mitochondrial-vdac-of-bean-seeds-recruits-phosphatidylethanolamine-lipids-for-its-proper-functioning
#12
Lamia Mlayeh, Eva-Maria Krammer, Marc Léonetti, Martine Prévost, Fabrice Homblé
The voltage-dependent anion-selective channel (VDAC) is the main pathway for inorganic ions and metabolites through the mitochondrial outer membrane. Studies recently demonstrated that membrane lipids regulate its function. It remains, however, unclear how this regulation takes place. In this study, we show that phospholipids are key regulators of Phaseolus VDAC function and, furthermore, that the salt concentration modulates this regulation. Both selectivity and voltage dependence of Phaseolus VDAC are very sensitive to a change in the lipid polar head from PC to PE...
June 27, 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/28666233/5-aminolevulinic-acid-improves-dna-damage-and-dna-methylation-changes-in-deltamethrin-exposed-phaseolus-vulgaris-seedlings
#13
Mahmut Sinan Taspinar, Murat Aydin, Esra Arslan, Muhammet Yaprak, Guleray Agar
Deltamethrin, synthetic type II pyrethroid, is one of the most widely used pesticide in agriculture. Intense use of deltamethrin can cause permanant or temporary damages in nontarget plant species. In this study, we aimed to determine DNA methylation change and DNA damage level in Phaseolus vulgaris seedlings subjected to different concentrations of deltamethrin (0.02, 0.1 and 0.5 ppm). Coupled Restriction Enzyme Digestion-Random Amplification (CRED-RA) was performed to analyze the changes of DNA methylation as well as Randomly Amplified Polymorphic DNA (RAPD) was used for genotoxic influences estimation and genomic stability...
June 21, 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28653938/report-screening-of-the-anti-hyperglycemic-activity-of-some-medicinal-plants-of-jordan
#14
Ahmad S Alkofahi, Khalid K Abdul-Razzak, Karem H Alzoubi, Omar F Khabour
Diabetes represents a group of common diseases that are characterized by dysregulation of blood glucose levels. Plants are traditionally used for management of diseases including diabetes. In this study, we screened the anti-diabetic effect of extracts of 21 plants grown in Jordan. Extracts of plants were screened for their antihyperglycemic activity. Diabetes was induced in Sprague Dawley rats using Alloxan. Plant extracts were dosed at 1gm/kg. Blood glucose was measured at baseline and at every hour for 3 hours...
May 2017: Pakistan Journal of Pharmaceutical Sciences
https://www.readbyqxmd.com/read/28651001/pptfdb-a-pigeonpea-transcription-factor-database-for-exploring-functional-genomics-in-legumes
#15
Akshay Singh, Ajay Kumar Sharma, Nagendra Kumar Singh, Tilak Raj Sharma
Pigeonpea (Cajanus cajan L.), a diploid legume crop, is a member of the tribe Phaseoleae. This tribe is descended from the millettioid (tropical) clade of the subfamily Papilionoideae, which includes many important legume crop species such as soybean (Glycine max), mung bean (Vigna radiata), cowpea (Vigna ungiculata), and common bean (Phaseolus vulgaris). It plays major role in food and nutritional security, being rich source of proteins, minerals and vitamins. We have developed a comprehensive Pigeonpea Transcription Factors Database (PpTFDB) that encompasses information about 1829 putative transcription factors (TFs) and their 55 TF families...
2017: PloS One
https://www.readbyqxmd.com/read/28646395/translocation-of-trace-elements-from-sewage-sludge-amendments-to-plants-in-a-reclaimed-area
#16
Wiktor Halecki, Sławomir Klatka
The goal of the study was to evaluate bioaccumulation of trace elements in plants grown in post-mining soils amended with the biosolids material. Phaseolus vulgaris was investigated on the laboratory scale, and a mixture of grasses, Melilotus albus, Beta vulgaris, Zea mays L. and Miscanthus × giganteus were evaluated on the field scale. The results of the research showed that P. vulgaris fertilized with the Carbocrash substrate was able to grow. In addition, growth was enhanced following stimulation with gibberellic acid...
June 23, 2017: Bulletin of Environmental Contamination and Toxicology
https://www.readbyqxmd.com/read/28623868/ozone-induced-foliar-damage-and-release-of-stress-volatiles-is-highly-dependent-on-stomatal-openness-and-priming-by-low-level-ozone-exposure-in-phaseolus-vulgaris
#17
Shuai Li, Peter C Harley, Ülo Niinemets
Acute ozone exposure triggers major emissions of volatile organic compounds (VOC), but quantitatively, it is unclear how different ozone doses alter the start and the total amount of these emissions, and the induction rate of different stress volatiles. It is also unclear whether priming (i.e., pre-exposure to lower O3 concentrations) can modify the magnitude and kinetics of volatile emissions. We investigated photosynthetic characteristics and VOC emissions in Phaseolus vulgaris following acute ozone exposure (600 nmol mol(-1) for 30 min) under illumination and in darkness and after priming with 200 nmol mol(-1) O3 for 30 min...
June 17, 2017: Plant, Cell & Environment
https://www.readbyqxmd.com/read/28619052/heterologous-expression-of-an-%C3%AE-amylase-inhibitor-from-common-bean-phaseolus-vulgaris-in-kluyveromyces-lactis-and-saccharomyces-cerevisiae
#18
Stephanie Brain-Isasi, Alejandro Álvarez-Lueje, Thomas Joseph V Higgins
BACKGROUND: Phaseolamin or α-amylase inhibitor 1 (αAI) is a glycoprotein from common beans (Phaseolus vulgaris L.) that inhibits some insect and mammalian α-amylases. Several clinical studies support the beneficial use of bean αAI for control of diabetes and obesity. Commercial extracts of P. vulgaris are available but their efficacy is still under question, mainly because some of these extracts contain antinutritional impurities naturally present in bean seeds and also exhibit a lower specific activity αAI...
June 15, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28585939/linking-rhizosphere-microbiome-composition-of-wild-and-domesticated-phaseolus-vulgaris-to-genotypic-and-root-phenotypic-traits
#19
Juan E Pérez-Jaramillo, Víctor J Carrión, Mirte Bosse, Luiz F V Ferrão, Mattias de Hollander, Antonio A F Garcia, Camilo A Ramírez, Rodrigo Mendes, Jos M Raaijmakers
Plant domestication was a pivotal accomplishment in human history, but also led to a reduction in genetic diversity of crop species compared to their wild ancestors. How this reduced genetic diversity affected plant-microbe interactions belowground is largely unknown. Here, we investigated the genetic relatedness, root phenotypic traits and rhizobacterial community composition of modern and wild accessions of common bean (Phaseolus vulgaris) grown in agricultural soil from the highlands of Colombia, one of the centers of common bean diversification...
June 6, 2017: ISME Journal
https://www.readbyqxmd.com/read/28585693/influences-of-soaking-temperature-and-storage-conditions-on-hardening-of-soybeans-glycine-max-and-red-kidney-beans-phaseolus-vulgaris
#20
Takako Koriyama, Yoko Sato, Kumiko Iijima, Midori Kasai
The influences of soaking treatment and storage conditions on the softening of cooked beans, namely, soybeans and red kidney beans, were investigated. It was revealed that the softening of fresh soybeans and fresh red kidney beans was suppressed during subsequent boiling after soaking treatment at 50 and 60 °C. Furthermore, in treated aged soybeans and red kidney beans that were subjected to storage at 30 °C/75% relative humidity for 6 mo and soaking treatment at 50 to 60 °C, the hardness during cooking was further amplified...
July 2017: Journal of Food Science
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