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Flower development, plant breeding

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https://www.readbyqxmd.com/read/28431521/a-reference-floral-transcriptome-of-sexual-and-apomictic-paspalum-notatum
#1
Juan Pablo A Ortiz, Santiago Revale, Lorena A Siena, Maricel Podio, Luciana Delgado, Juliana Stein, Olivier Leblanc, Silvina C Pessino
BACKGROUND: Paspalum notatum Flügge is a subtropical grass native to South America, which includes sexual diploid and apomictic polyploid biotypes. In the past decade, a number of apomixis-associated genes were discovered in this species through genetic mapping and differential expression surveys. However, the scarce information on Paspalum sequences available in public databanks limited annotations and functional predictions for these candidates. RESULTS: We used a long-read 454/Roche FLX+ sequencing strategy to produce robust reference transcriptome datasets from florets of sexual and apomictic Paspalum notatum genotypes and delivered a list of transcripts showing differential representation in both reproductive types...
April 21, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28400774/elite-haplotypes-of-a-protein-kinase-gene-tasnrk2-3-associated-with-important-agronomic-traits-in-common-wheat
#2
Lili Miao, Xinguo Mao, Jingyi Wang, Zicheng Liu, Bin Zhang, Weiyu Li, Xiaoping Chang, Matthew Reynolds, Zhenhua Wang, Ruilian Jing
Plant-specific protein kinase SnRK2s play crucial roles in response to various environmental stimuli. TaSnRK2.3, a SnRK2 member, was involved in the response to multiple abiotic stresses in wheat. To facilitate the use of TaSnRK2.3 in wheat breeding, the three genomic sequences of TaSnRK2.3, originating from the A, B, and D genomes of hexaploid wheat, were obtained. Sequence polymorphism assays showing 4 and 10 variations were detected at TaSnRK2.3-1A and at TaSnRK2.3-1B, respectively, yet no variation was identified at TaSnRK2...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28400493/a-virus-induced-assay-for-functional-dissection-and-analysis-of-monocot-and-dicot-flowering-time-genes
#3
Cheng Qin, Wei Wei Chen, Jiajia Shen, Linming Cheng, Femi Akande, Ke Zhang, Chen Yuan, Chunyang Li, Pengcheng Zhang, Nongnong Shi, Qi Cheng, Yule Liu, Stephen Jackson, Yiguo Hong
Virus-induced flowering (VIF) uses virus vectors to express Flowering Locus T (FT) to induce flowering in plants. This approach has recently attracted wide interest for its practical applications in accelerating breeding in crops and woody fruit-trees. However, the insight into VIF and its potential as a powerful tool for dissecting florigenic proteins remained to be elucidated. Here, we describe the mechanism and further applications of Potato virus X (PVX)-based VIF in the short-day Nicotinana tabacum cultivar Maryland Mammoth...
April 11, 2017: Plant Physiology
https://www.readbyqxmd.com/read/28346447/synthetic-control-of-flowering-in-rice-independent-of-the-cultivation-environment
#4
Ryo Okada, Yasue Nemoto, Naokuni Endo-Higashi, Takeshi Izawa
For genetically homogeneous crops, the timing of flowering is determined largely by the cultivation environment and is strongly associated with the yield and quality of the harvest(1). Flowering time and other agronomical traits are often tightly correlated, which can lead to difficulty excluding the effects of flowering time when evaluating the characteristics of different genetic varieties(2). Here, we describe the development of transgenic rice plants whose flowering time can be controlled by specific agrochemicals...
March 27, 2017: Nature Plants
https://www.readbyqxmd.com/read/28338049/breeding-system-and-spatial-isolation-from-congeners-strongly-constrain-seed-set-in-an-insect-pollinated-apomictic-tree-sorbus-subcuneata-rosaceae
#5
Tracey J Hamston, Robert J Wilson, Natasha de Vere, Tim C G Rich, Jamie R Stevens, James E Cresswell
In plants, apomixis results in the production of clonal offspring via seed and can provide reproductive assurance for isolated individuals. However, many apomicts require pollination to develop functional endosperm for successful seed set (pseudogamy) and therefore risk pollination-limitation, particularly in self-incompatible species that require heterospecific pollen. We used microsatellite paternity analysis and hand pollinations to investigate pollen-limitation in Sorbus subcuneata, a threatened endemic tree that co-occurs with its congener, S...
March 24, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28330092/development-of-molecular-method-for-sex-identification-in-date-palm-phoenix-dactylifera-l-plantlets-using-novel-sex-linked-microsatellite-markers
#6
Maryam, Muhammad Jafar Jaskani, Faisal Saeed Awan, Saeed Ahmad, Iqrar A Khan
Microsatellite markers containing simple sequence repeats (SSRs) are a valuable tool for genetic analysis. Date palm is a dioecious and slow flowering and is very difficult to identify the gender of the trees until it reaches the reproductive age (5-10 years). A total of 12 microsatellite primers were used with 30 date palm samples, 14 parents (8 male + 6 females) and 16 progeny (developed from parents breeding) which showed that microsatellites were highly polymorphic, having a great number of alleles. A total of 124 alleles were characterized in 12 SSR loci...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28252172/identification-of-magnolia-wufengensis-magnoliaceae-cultivars-using-phenotypic-traits-ssr-and-srap-markers-insights-into-breeding-and-conservation
#7
L Wang, A H Xiao, L Y Ma, F J Chen, Z Y Sang, J Duan
A combination of phenotypic characterization and molecular markers may provide reliable information on new plant varieties and elucidate the conservation status of rare species. Five newly developed Magnolia wufengensis cultivars, an endangered plant species endemic to Hubei Province, China, possess more distinctive phenotypes than common Magnolia cultivars. With reference to a wild species population of M. wufengensis and a population of Magnolia denudata, morphological traits of flower organs, simple sequence repeat (SSR), and sequence-related amplified polymorphism (SRAP) markers were used...
February 23, 2017: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/28193581/genome-wide-characterization-and-expression-profiling-of-the-nac-genes-under-abiotic-stresses-in-cucumis-sativus
#8
Xiao Meng Zhang, Hong Jun Yu, Chao Sun, Jie Deng, Xue Zhang, Peng Liu, Yun Yun Li, Qiang Li, Wei Jie Jiang
The NAC (standing for no apical meristem [NAM], Arabidopsis transcription activation factor [ATAF] and cup-shaped cotyledon [CUC]) proteins pertain to one of the plant-specific transcription factor families that play important roles in plant development, abiotic stress resistance and signalling transduction. In the present study, the genomic features of the NAC genes in cucumber were analysed in depth using in silico tools. To reveal a tissue-specific, abiotic stress and hormone-responsive expression profile of CsNAC genes, RT-qPCR was performed under different treatments...
January 31, 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28190677/bornyl-diphosphate-synthase-from-lavandula-angustifolia-a-major-monoterpene-synthase-involved-in-essential-oil-quality
#9
Yolande Despinasse, Sébastien Fiorucci, Serge Antonczak, Sandrine Moja, Aurélie Bony, Florence Nicolè, Sylvie Baudino, Jean-Louis Magnard, Frédéric Jullien
Lavender essential oils (EOs) of higher quality are produced by a few Lavandula angustifolia cultivars and mainly used in the perfume industry. Undesirable compounds such as camphor and borneol are also synthesized by lavender leading to a depreciated EO. Here, we report the cloning of bornyl diphosphate synthase of lavender (LaBPPS), an enzyme that catalyzes the production of bornyl diphosphate (BPP) and then by-products such as borneol or camphor, from an EST library. Compared to the BPPS of Salvia officinalis, the functional characterization of LaBPPS showed several differences in amino acid sequence, and the distribution of catalyzed products...
May 2017: Phytochemistry
https://www.readbyqxmd.com/read/28177832/natural-variation-in-i-circadian-clock-associated-1-i-is-associated-with-flowering-time-in-i-brassica-rapa-i
#10
Hankuil Yi, Xiaonan Li, Seong Ho Lee, Ill-Sup Nou, Yong Pyo Lim, Yoonkang Hur
Flowering time is a very important agronomic trait and the development of molecular markers associated with this trait can facilitate crop breeding. <i>CIRCADIAN CLOCK ASSOCIATED 1</i> (<i>CCA1</i>), a core oscillator component of circadian rhythms that affect metabolic pathways in plants, has been implicated in flowering time control in <i>Brassica</i> species. <i>CCA1</i> gene sequences from three <i>Brassica rapa</i> inbred lines, showing either early flowering or late flowering phenotypes, were analyzed and a high level of ets were designed and tested using various inbred lines of <i>B...
December 22, 2016: Genome Génome / Conseil National de Recherches Canada
https://www.readbyqxmd.com/read/28174587/integrating-small-rna-sequencing-with-qtl-mapping-for-identification-of-mirnas-and-their-target-genes-associated-with-heat-tolerance-at-the-flowering-stage-in-rice
#11
Qing Liu, Tifeng Yang, Ting Yu, Shaohong Zhang, Xingxue Mao, Junliang Zhao, Xiaofei Wang, Jingfang Dong, Bin Liu
Although, microRNAs (miRNAs) have been reported to be associated with heat tolerance at the seedling stage in rice, their involvement in heat tolerance at the flowering stage is still unknown. In this study, small RNA profiling was conducted in a heat-tolerant variety Gan-Xiang-Nuo (GXN) and a heat-sensitive variety Hua-Jing-Xian-74 (HJX), respectively. Totally, 102 miRNAs were differentially expressed (DE) under heat stress. Compared to HJX, GXN had more DE miRNAs and its DE miRNAs changed earlier under heat stress...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28154963/cytological-analysis-of-ginseng-carpel-development
#12
Jeniffer Silva, Yu-Jin Kim, Dexin Xiao, Johan Sukweenadhi, Tingting Hu, Woo-Saeng Kwon, Jianping Hu, Deok-Chun Yang, Dabing Zhang
Panax ginseng Meyer, commonly known as ginseng, is considered one of the most important herbs with pharmaceutical values due to the presence of ginsenosides and is cultivated for its highly valued root for medicinal purposes. Recently, it has been recognized that ginseng fruit contains high contents of triterpene such as ginsenoside Re as pharmaceutical compounds. However, it is unclear how carpel, the female reproductive tissue of flowers, is formed during the three-year-old growth before fruit is formed in ginseng plants...
February 2, 2017: Protoplasma
https://www.readbyqxmd.com/read/28152098/genome-wide-association-analysis-for-heat-tolerance-at-flowering-detected-a-large-set-of-genes-involved-in-adaptation-to-thermal-and-other-stresses
#13
Tanguy Lafarge, Crisanta Bueno, Julien Frouin, Laval Jacquin, Brigitte Courtois, Nourollah Ahmadi
Fertilization sensitivity to heat in rice is a major issue within climate change scenarios in the tropics. A panel of 167 indica landraces and improved varieties was phenotyped for spikelet sterility (SPKST) under 38°C during anthesis and for several secondary traits potentially affecting panicle micro-climate and thus the fertilization process. The panel was genotyped with an average density of one marker per 29 kb using genotyping by sequencing. Genome-wide association analyses (GWAS) were conducted using three methods based on single marker regression, haplotype regression and simultaneous fitting of all markers, respectively...
2017: PloS One
https://www.readbyqxmd.com/read/28114299/matrilineal-a-sperm-specific-phospholipase-triggers-maize-haploid-induction
#14
Timothy Kelliher, Dakota Starr, Lee Richbourg, Satya Chintamanani, Brent Delzer, Michael L Nuccio, Julie Green, Zhongying Chen, Jamie McCuiston, Wenling Wang, Tara Liebler, Paul Bullock, Barry Martin
Sexual reproduction in flowering plants involves double fertilization, the union of two sperm from pollen with two sex cells in the female embryo sac. Modern plant breeders increasingly seek to circumvent this process to produce doubled haploid individuals, which derive from the chromosome-doubled cells of the haploid gametophyte. Doubled haploid production fixes recombinant haploid genomes in inbred lines, shaving years off the breeding process. Costly, genotype-dependent tissue culture methods are used in many crops, while seed-based in vivo doubled haploid systems are rare in nature and difficult to manage in breeding programmes...
January 23, 2017: Nature
https://www.readbyqxmd.com/read/28081202/characterization-and-functional-analysis-of-five-mads-box-b-class-genes-related-to-floral-organ-identification-in-tagetes-erecta
#15
Ye Ai, Chunling Zhang, Yalin Sun, Weining Wang, Yanhong He, Manzhu Bao
According to the floral organ development ABC model, B class genes specify petal and stamen identification. In order to study the function of B class genes in flower development of Tagetes erecta, five MADS-box B class genes were identified and their expression and putative functions were studied. Sequence comparisons and phylogenetic analyses indicated that there were one PI-like gene-TePI, two euAP3-like genes-TeAP3-1 and TeAP3-2, and two TM6-like genes-TeTM6-1 and TeTM6-2 in T. erecta. Strong expression levels of these genes were detected in stamens of the disk florets, but little or no expression was detected in bracts, receptacles or vegetative organs...
2017: PloS One
https://www.readbyqxmd.com/read/28052078/morphological-characterization-of-a-new-and-easily-recognizable-nuclear-male-sterile-mutant-of-sorghum-sorghum-bicolor
#16
Zhanguo Xin, Jian Huang, Ashley R Smith, Junping Chen, John Burke, Scott E Sattler, Dazhong Zhao
Sorghum (Sorghum bicolor L. Moench) is one of the most important grain crops in the world. The nuclear male sterility (NMS) trait, which is caused by mutations on the nuclear gene, is valuable for hybrid breeding and genetic studies. Several NMS mutants have been reported previously, but none of them were well characterized. Here, we present our detailed morphological characterization of a new and easily recognizable NMS sorghum mutant male sterile 8 (ms8) isolated from an elite inbred BTx623 mutagenized by ethyl methane sulfonate (EMS)...
2017: PloS One
https://www.readbyqxmd.com/read/28049346/genoproteomics-assisted-improvement-of-andrographis-paniculata-toward-a-promising-molecular-and-conventional-breeding-platform-for-autogamous-plants-affecting-the-pharmaceutical-industry
#17
Alireza Valdiani, Daryush Talei, Surrinder K Lattoo, Rodomiro Ortiz, Søren Kjærsgaard Rasmussen, Jacqueline Batley, Mohd Yusop Rafii, Mahmood Maziah, Kallevettankuzhy K Sabu, Rambod Abiri, Suchirat Sakuanrungsirikul, Soon Guan Tan
Andrographis paniculata (Burm. f.) Wall. ex Nees. (AP) is a hermaphroditic, self-compatible, and habitual inbreeding plant. Its main bioactive component is andrographolide, which is capable of inducing autophagic cell death in some human cancer cells and helps fight HIV/AIDS. Increasing the andrographolide content by investigating the genetic mechanisms controlling its biosynthesis in order to improve and develop high-yielding cultivars are the main breeding targets for AP. However, there might exist some limitations or barriers for crossability within AP accessions...
January 3, 2017: Critical Reviews in Biotechnology
https://www.readbyqxmd.com/read/27933075/a-non-specific-setaria-italica-lipid-transfer-protein-gene-plays-a-critical-role-under-abiotic-stress
#18
Yanlin Pan, Jianrui Li, Licong Jiao, Cong Li, Dengyun Zhu, Jingjuan Yu
Lipid transfer proteins (LTPs) are a class of cysteine-rich soluble proteins having small molecular weights. LTPs participate in flower and seed development, cuticular wax deposition, also play important roles in pathogen and abiotic stress responses. A non-specific LTP gene (SiLTP) was isolated from a foxtail millet (Setaria italica) suppression subtractive hybridization library enriched for differentially expressed genes after abiotic stress treatments. A semi-quantitative reverse transcriptase PCR analysis showed that SiLTP was expressed in all foxtail millet tissues...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27903632/genomic-prediction-with-pedigree-and-genotype-%C3%A3-environment-interaction-in-spring-wheat-grown-in-south-and-west-asia-north-africa-and-mexico
#19
Sivakumar Sukumaran, Jose Crossa, Diego Jarquin, Marta Lopes, Mathew P Reynolds
Developing genomic selection (GS) models is an important step in applying GS to accelerate the rate of genetic gain in grain yield in plant breeding. In this study, seven genomic prediction models under two cross-validation scenarios were tested on 287 advanced elite spring wheat lines phenotyped for grain yield (GY), thousand-grain weight (GW), grain number (GN), and thermal time for flowering (TTF) in 18 international environments (year-location combinations) in major wheat producing countries in 2010 and 2011...
November 30, 2016: G3: Genes—Genomes—Genetics
https://www.readbyqxmd.com/read/27872631/identification-and-characterization-of-cyc-like-genes-in-regulation-of-ray-floret-development-in-chrysanthemum-morifolium
#20
Di Huang, Xiaowei Li, Ming Sun, Tengxun Zhang, Huitang Pan, Tangren Cheng, Jia Wang, Qixiang Zhang
Chrysanthemum morifolium, one of the most economically important ornamental crops worldwide, is well-known for the elaborate and complex inflorescence which is composed of both bilaterally symmetrical ray florets and radially symmetrical disc florets. Despite continuing efforts, the molecular mechanisms underlying regulation of the two flower types are still unclear so far. CYC-like proteins have been shown to control flower symmetry or regulate flower-type identity in several angiosperm plant lineages. In this study, we conducted comparative analysis of the CmCYC2 genes in two chrysanthemum cultivars and their F1 progenies with various whorls of ray florets...
2016: Frontiers in Plant Science
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