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Spatio-temporal modeling

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https://www.readbyqxmd.com/read/28231328/integrating-the-sd-clue-s-and-invest-models-into-assessment-of-oasis-carbon-storage-in-northwestern-china
#1
Youjia Liang, Lijun Liu, Jiejun Huang
Spatio-temporal integrated assessment of land-use change impacts on carbon storage services is a new and important research field in land science and landscape ecology. The objective of this paper is to use an integrated SD-CLUE-S and InVEST model to simulate and predict land-use changes impacts during 2000-2018 on carbon storage at pixel and regional scales in the Zhangye oasis, Northwest China. The SD-CLUE-S model was used to simulate land-use change, and three land-use scenarios (current trend, moderate protection, and strict protection) were defined in collaboration with oasis socioeconomic development and ecological environment conservation by local government...
2017: PloS One
https://www.readbyqxmd.com/read/28227908/a-boolean-approach-to-bacterial-chemotaxis
#2
Anuj Deshpande, Sibendu Samanta, Haimabati Das, Ritwik Kumar Layek, Anuj Deshpande, Sibendu Samanta, Haimabati Das, Ritwik Kumar Layek, Sibendu Samanta, Anuj Deshpande, Haimabati Das, Ritwik Kumar Layek
Bacterium such as Escherichia coli (E. coli) show biased Brownian motion in different chemical concentration gradients. This chemical sensitive motility or chemotaxis has gained considerable interest among scientists for some remarkable features such as chemo-sensory dynamic range, adaptation, diffusion and drift. A Boolean model of the whole chemotaxis process has been developed in this manuscript. The response of the circuit is in accordance with the experimental results available in the literature, providing indirect validation of the model...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227865/a-dce-mri-imaging-based-model-for-simulation-of-vascular-tumour-growth
#3
Thais Roque, Veerle Kersemans, Sean Smart, Danny Allen, Julia A Schnabel, Michael Chappell, Thais Roque, Veerle Kersemans, Sean Smart, Danny Allen, Julia A Schnabel, Michael Chappell, Sean Smart, Michael Chappell, Veerle Kersemans, Danny Allen, Julia A Schnabel, Thais Roque
Imaging-based modelling of tumour growth can serve as a powerful tool to understand and predict tumour evolution and its response to therapy. The purpose of this study was to introduce, calibrate and evaluate a multi-scale model of vascular tumour growth. The model allows for proliferation, death and spatial spread of tumour cells as well as for new vessel creation. Both the calibration and the evaluation of the tumour growth model were performed using pre-clinical longitudinal time series of dynamic contrast-enhanced magnetic resonance imaging of colon carcinoma...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227411/source-imaging-of-simple-finger-movements-captured-during-auditory-response-tasks-using-space-time-frequency-based-sparsity-constraints
#4
Aritra Chaudhuri, Aurobinda Routray, Aritra Chaudhuri, Aurobinda Routray, Aurobinda Routray, Aritra Chaudhuri
Neural Information Flow during simple cognitive or motor actions is a significant research topic; one of which is a simple finger movement. In this paper, Electro-encephalograph (EEG) Source Imaging has been used to model the Neural Information flow, during performance of a simple Auditory Response Task (ART), specifically by employment of a space-time-frequency sparsity constrained based algorithm, namely, Spatio-temporal Unifying Tomography (STOUT). The estimated sources are then studied according to location defined based on Destrieux atlas...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227230/a-biologically-inspired-image-classifier-adaptive-feature-detection
#5
Jeffrey C Ames, Konstantinos P Michmizos, Jeffrey C Ames, Konstantinos P Michmizos, Jeffrey C Ames, Konstantinos P Michmizos
Today's artificial neural networks use computational models and algorithms inspired by the knowledge of the brain in the '90s. Powerful as they are, artificial networks are impressive but their domain specificity and reliance on vast numbers of labeled examples are obvious limitations. About a decade ago, spiking neural networks (SNNs) emerged as a new formalism that takes advantage of the spike timing and are particularly versatile when depicting spatio-temporal representations. The challenge now is to design rules for SNNs that can help them interact with their environment just like humans do...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226879/toward-a-low-cost-gait-analysis-system-for-clinical-and-free-living-assessment
#6
Cassim Ladha, Silvia Del Din, Kianoush Nazarpour, Aodhan Hickey, Rosie Morris, Michael Catt, Lynn Rochester, Alan Godfrey, Cassim Ladha, Silvia Del Din, Kianoush Nazarpour, Aodhan Hickey, Rosie Morris, Michael Catt, Lynn Rochester, Alan Godfrey, Rosie Morris, Cassim Ladha, Lynn Rochester, Alan Godfrey, Aodhan Hickey, Silvia Del Din, Kianoush Nazarpour, Michael Catt
Gait is an important clinical assessment tool since changes in gait may reflect changes in general health. Measurement of gait is a complex process which has been restricted to bespoke clinical facilities until recently. The use of inexpensive wearable technologies is an attractive alternative and offers the potential to assess gait in any environment. In this paper we present the development of a low cost analysis gait system built using entirely open source components. The system is used to capture spatio-temporal gait characteristics derived from an existing conceptual model, sensitive to ageing and neurodegenerative pathology (e...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226819/decoding-memory-features-from-hippocampal-spiking-activities-using-sparse-classification-models
#7
Dong Song, Robert E Hampson, Brian S Robinson, Vasilis Z Marmarelis, Sam A Deadwyler, Theodore W Berger, Dong Song, Robert E Hampson, Brian S Robinson, Vasilis Z Marmarelis, Sam A Deadwyler, Theodore W Berger, Dong Song, Robert E Hampson, Sam A Deadwyler, Theodore W Berger, Vasilis Z Marmarelis, Brian S Robinson
To understand how memory information is encoded in the hippocampus, we build classification models to decode memory features from hippocampal CA3 and CA1 spatio-temporal patterns of spikes recorded from epilepsy patients performing a memory-dependent delayed match-to-sample task. The classification model consists of a set of B-spline basis functions for extracting memory features from the spike patterns, and a sparse logistic regression classifier for generating binary categorical output of memory features...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226721/overcoming-spatio-temporal-limitations-using-dynamically-scaled-in-vitro-pc-mri-a-flow-field-comparison-to-true-scale-computer-simulations-of-idealized-stented-and-patient-specific-left-main-bifurcations
#8
Susann Beier, John Ormiston, Mark Webster, John Cater, Stuart Norris, Pau Medrano-Gracia, Alistair Young, Kathleen Gilbert, Brett Cowan, Susann Beier, John Ormiston, Mark Webster, John Cater, Stuart Norris, Pau Medrano-Gracia, Alistair Young, Kathleen Gilbert, Brett Cowan, Stuart Norris, Brett Cowan, Pau Medrano-Gracia, Kathleen Gilbert, Mark Webster, Alistair Young, Susann Beier, John Cater, John Ormiston
The majority of patients with angina or heart failure have coronary artery disease. Left main bifurcations are particularly susceptible to pathological narrowing. Flow is a major factor of atheroma development, but limitations in imaging technology such as spatio-temporal resolution, signal-to-noise ratio (SNRv), and imaging artefacts prevent in vivo investigations. Computational fluid dynamics (CFD) modelling is a common numerical approach to study flow, but it requires a cautious and rigorous application for meaningful results...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28224652/cardio-stic-based-reference-ranges-of-fetal-thymus-size-in-singleton-pregnancies
#9
Sirida Pittyanont, Suchaya Luewan, Theera Tongsong
OBJECTIVES: To establish the reference ranges of the fetal thymus size among Thai fetuses. METHODS: The database of spatio-temporal image correlation (cardio-STIC) was assessed to obtain the volume data sets for offline analysis. The volume data sets acquired at 16 to 38 weeks were measured for the thymus transverse diameter (TD) and the thymus/thoracic (TT) ratio at the three-vessel view. The measured values were regressed to identify the best-fitted model. RESULTS: A total of 622 volumes were successfully measured and the reference ranges of TD and TT ratio were established...
February 22, 2017: Journal of Ultrasound in Medicine: Official Journal of the American Institute of Ultrasound in Medicine
https://www.readbyqxmd.com/read/28224236/wavenumber-selection-in-coupled-transport-equations
#10
Arnd Scheel, Angela Stevens
We study mechanisms for wavenumber selection in a minimal model for run-and-tumble dynamics. We show that nonlinearity in tumbling rates induces the existence of a plethora of traveling- and standing-wave patterns, as well as a subtle selection mechanism for the wavenumbers of spatio-temporally periodic waves. We comment on possible implications for rippling patterns observed in colonies of myxobacteria.
February 21, 2017: Journal of Mathematical Biology
https://www.readbyqxmd.com/read/28220255/phenological-patterns-of-flowering-across-biogeographical-regions-of-europe
#11
Barbara Templ, Matthias Templ, Peter Filzmoser, Annamária Lehoczky, Eugenija Bakšienè, Stefan Fleck, Hilppa Gregow, Sabina Hodzic, Gunta Kalvane, Eero Kubin, Vello Palm, Danuta Romanovskaja, Višnja Vucˇetic, Ana Žust, Bálint Czúcz
Long-term changes of plant phenological phases determined by complex interactions of environmental factors are in the focus of recent climate impact research. There is a lack of studies on the comparison of biogeographical regions in Europe in terms of plant responses to climate. We examined the flowering phenology of plant species to identify the spatio-temporal patterns in their responses to environmental variables over the period 1970-2010. Data were collected from 12 countries along a 3000-km-long, North-South transect from northern to eastern Central Europe...
February 20, 2017: International Journal of Biometeorology
https://www.readbyqxmd.com/read/28218279/multi-constituent-simulation-of-thrombus-deposition
#12
Wei-Tao Wu, Megan A Jamiolkowski, William R Wagner, Nadine Aubry, Mehrdad Massoudi, James F Antaki
In this paper, we present a spatio-temporal mathematical model for simulating the formation and growth of a thrombus. Blood is treated as a multi-constituent mixture comprised of a linear fluid phase and a thrombus (solid) phase. The transport and reactions of 10 chemical and biological species are incorporated using a system of coupled convection-reaction-diffusion (CRD) equations to represent three processes in thrombus formation: initiation, propagation and stabilization. Computational fluid dynamic (CFD) simulations using the libraries of OpenFOAM were performed for two illustrative benchmark problems: in vivo thrombus growth in an injured blood vessel and in vitro thrombus deposition in micro-channels (1...
February 20, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28212639/erectile-dysfunction-and-exposure-to-ambient-air-pollution-in-a-nationally-representative-cohort-of-older-men
#13
Lindsay A Tallon, Justin Manjourides, Vivian C Pun, Murray A Mittleman, Marianthi-Anna Kioumourtzoglou, Brent Coull, Helen Suh
BACKGROUND: Little is known about the association between air pollution and erectile dysfunction (ED), a disorder occurring in 64% of men over the age of 70, and to date, no studies have been published. To address this significant knowledge gap, we explored the relationship between ED and air pollution in a group of older men who were part of the National Social Life, Health, and Aging Project (NSHAP), a nationally representative cohort study of older Americans. METHODS: We obtained incident ED status and participant data for 412 men (age 57-85)...
February 17, 2017: Environmental Health: a Global Access Science Source
https://www.readbyqxmd.com/read/28210916/a-multiscale-mathematical-model-of-tumour-invasive-growth
#14
Lu Peng, Dumitru Trucu, Ping Lin, Alastair Thompson, Mark A J Chaplain
Known as one of the hallmarks of cancer (Hanahan and Weinberg in Cell 100:57-70, 2000) cancer cell invasion of human body tissue is a complicated spatio-temporal multiscale process which enables a localised solid tumour to transform into a systemic, metastatic and fatal disease. This process explores and takes advantage of the reciprocal relation that solid tumours establish with the extracellular matrix (ECM) components and other multiple distinct cell types from the surrounding microenvironment. Through the secretion of various proteolytic enzymes such as matrix metalloproteinases or the urokinase plasminogen activator (uPA), the cancer cell population alters the configuration of the surrounding ECM composition and overcomes the physical barriers to ultimately achieve local cancer spread into the surrounding tissue...
February 16, 2017: Bulletin of Mathematical Biology
https://www.readbyqxmd.com/read/28210895/combining-physiological-environmental-and-locational-sensors-for-citizen-oriented-health-applications
#15
J J Huck, J D Whyatt, P Coulton, B Davison, A Gradinar
This work investigates the potential of combining the outputs of multiple low-cost sensor technologies for the direct measurement of spatio-temporal variations in phenomena that exist at the interface between our bodies and the environment. The example used herein is the measurement of personal exposure to traffic pollution, which may be considered as a function of the concentration of pollutants in the air and the frequency and volume of that air which enters our lungs. The sensor-based approach described in this paper removes the 'traditional' requirements either to model or interpolate pollution levels or to make assumptions about the physiology of an individual...
March 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28207804/spatio-temporal-dynamics-of-a-fish-predator-density-dependent-and-hydrographic-effects-on-baltic-sea-cod-population
#16
Valerio Bartolino, Huidong Tian, Ulf Bergström, Pekka Jounela, Eero Aro, Christian Dieterich, H E Markus Meier, Massimiliano Cardinale, Barbara Bland, Michele Casini
Understanding the mechanisms of spatial population dynamics is crucial for the successful management of exploited species and ecosystems. However, the underlying mechanisms of spatial distribution are generally complex due to the concurrent forcing of both density-dependent species interactions and density-independent environmental factors. Despite the high economic value and central ecological importance of cod in the Baltic Sea, the drivers of its spatio-temporal population dynamics have not been analytically investigated so far...
2017: PloS One
https://www.readbyqxmd.com/read/28205287/upstream-regulation-for-initiation-of-restricted-shh-expression-in-the-chick-limb-bud
#17
Haruka Matsubara, Daisuke Saito, Gembu Abe, Hitoshi Yokoyama, Takayuki Suzuki, Koji Tamura
Background The organizing center, which serves as a morphogen source, has crucial functions in morphogenesis in animal development. The center is necessarily located in a certain restricted area in the morphogenetic field, and there are several ways in which an organizing center can be restricted. The organizing center for limb morphogenesis, the ZPA (zone of polarizing activity), specifically expresses the Shh gene and is restricted to the posterior region of the developing limb bud. Results The prepattern along the limb antero-posterior axis, provided by anterior Gli3 expression and posterior Hand2 expression, seems insufficient for the initiation of Shh expression restricted to a narrow, small spot in the posterior limb field...
February 16, 2017: Developmental Dynamics: An Official Publication of the American Association of Anatomists
https://www.readbyqxmd.com/read/28196105/adaptive-geostatistical-sampling-enables-efficient-identification-of-malaria-hotspots-in-repeated-cross-sectional-surveys-in-rural-malawi
#18
Alinune N Kabaghe, Michael G Chipeta, Robert S McCann, Kamija S Phiri, Michèle van Vugt, Willem Takken, Peter Diggle, Anja D Terlouw
INTRODUCTION: In the context of malaria elimination, interventions will need to target high burden areas to further reduce transmission. Current tools to monitor and report disease burden lack the capacity to continuously detect fine-scale spatial and temporal variations of disease distribution exhibited by malaria. These tools use random sampling techniques that are inefficient for capturing underlying heterogeneity while health facility data in resource-limited settings are inaccurate...
2017: PloS One
https://www.readbyqxmd.com/read/28195417/toward-the-automatic-quantification-of-in-utero-brain-development-in-3d-structural-mri-a-review
#19
REVIEW
Oualid M Benkarim, Gerard Sanroma, Veronika A Zimmer, Emma Muñoz-Moreno, Nadine Hahner, Elisenda Eixarch, Oscar Camara, Miguel Angel González Ballester, Gemma Piella
Investigating the human brain in utero is important for researchers and clinicians seeking to understand early neurodevelopmental processes. With the advent of fast magnetic resonance imaging (MRI) techniques and the development of motion correction algorithms to obtain high-quality 3D images of the fetal brain, it is now possible to gain more insight into the ongoing maturational processes in the brain. In this article, we present a review of the major building blocks of the pipeline toward performing quantitative analysis of in vivo MRI of the developing brain and its potential applications in clinical settings...
February 14, 2017: Human Brain Mapping
https://www.readbyqxmd.com/read/28193692/goal-directed-and-habit-like-modulations-of-stimulus-processing-during-reinforcement-learning
#20
David Luque, Tom Beesley, Richard Morris, Bradley N Jack, Oren Griffiths, Thomas Whitford, Mike E Le Pelley
Recent research has shown that perceptual processing of stimuli previously associated with high-value rewards is automatically prioritized, even when rewards are no longer available. It has been hypothesized that such reward-related modulation of stimulus salience is conceptually similar to an 'attentional habit'. Recording event-related potentials in humans during a reinforcement learning task, we show strong evidence in favor of this hypothesis. Resistance to outcome devaluation (the defining feature of a habit) was shown by the stimulus-locked P1 component, reflecting activity in the extrastriate visual cortex...
February 13, 2017: Journal of Neuroscience: the Official Journal of the Society for Neuroscience
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