keyword
https://read.qxmd.com/read/38718349/evaluating-polarizable-biomembrane-simulations-against-experiments
#1
JOURNAL ARTICLE
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Owing to the increase of available computational capabilities and the potential for providing a more accurate description, polarizable molecular dynamics force fields are gaining popularity in modeling biomolecular systems. It is, however, crucial to evaluate how much precision is truly gained with increasing cost and complexity of the simulation. Here, we leverage the NMRlipids open collaboration and Databank to assess the performance of available polarizable lipid models─the CHARMM-Drude and the AMOEBA-based parameters─against high-fidelity experimental data and compare them to the top-performing nonpolarizable models...
May 8, 2024: Journal of Chemical Theory and Computation
https://read.qxmd.com/read/38718183/real-time-identification-of-aerosol-phase-carboxylic-acid-production-using-extractive-electrospray-ionization-mass-spectrometry
#2
JOURNAL ARTICLE
Mihnea Surdu, Jens Top, Boxing Yang, Jun Zhang, Jay G Slowik, André S H Prévôt, Dongyu S Wang, Imad El Haddad, David M Bell
Comprehensive identification of aerosol sources and their constituent organic compounds requires aerosol-phase molecular-level characterization with a high time resolution. While real-time chemical characterization of aerosols is becoming increasingly common, information about functionalization and structure is typically obtained from offline methods. This study presents a method for determining the presence of carboxylic acid functional groups in real time using extractive electrospray ionization mass spectrometry based on measurements of [M - H + 2Na]+ adducts...
May 8, 2024: Environmental Science & Technology
https://read.qxmd.com/read/38718110/top-car-with-tmigd2-as-a-safe-and-effective-costimulatory-domain-in-car-cells-treating-human-solid-tumors
#3
JOURNAL ARTICLE
Christopher D Nishimura, Devin Corrigan, Xiang Yu Zheng, Phillip M Galbo, Shan Wang, Yao Liu, Yao Wei, Linna Suo, Wei Cui, Nadia Mercado, Deyou Zheng, Cheng Cheng Zhang, Xingxing Zang
Chimeric antigen receptor (CAR)-T cell therapy shows impressive efficacy treating hematologic malignancies but requires further optimization in solid tumors. Here, we developed a TMIGD2 optimized potent/persistent (TOP) CAR that incorporated the costimulatory domain of TMIGD2, a T and NK cell costimulator, and monoclonal antibodies targeting the IgV domain of B7-H3, an immune checkpoint expressed on solid tumors and tumor vasculature. Comparing second- and third-generation B7-H3 CARs containing TMIGD2, CD28, and/or 4-1BB costimulatory domains revealed superior antitumor responses in B7-H3...
May 10, 2024: Science Advances
https://read.qxmd.com/read/38717993/top-advances-of-the-year-perioperative-therapy-for-lung-cancer
#4
JOURNAL ARTICLE
Jacqueline V Aredo, Heather A Wakelee
Emerging data supporting the rise of perioperative immune checkpoint inhibitors (ICIs) as a standard of care in the treatment of early stage, surgically resectable non-small cell lung cancer (NSCLC) dominated the NSCLC news in 2023. Adjuvant pembrolizumab became the second adjuvant ICI to receive US Food and Drug Administration approval in early 2023 after the 2021 approval of adjuvant atezolizumab and the 2022 approval of neoadjuvant nivolumab with chemotherapy. Subsequently in 2023, multiple phase 3 trials examining perioperative ICIs were positive and demonstrated clinically meaningful outcomes by prolonging event-free survival, improving pathologic complete response rates, and trending toward improved overall survival in most...
May 8, 2024: Cancer
https://read.qxmd.com/read/38717655/producing-two-dimensional-dust-clouds-and-clusters-using-a-movable-electrode-for-complex-plasma-and-fundamental-physics-experiments
#5
JOURNAL ARTICLE
Ravi Kumar, Zhibo Liu, Saikat Chakraborty Thakur, Edward Thomas, Ranganathan Gopalakrishnan
We report a Bidirectional Electrode Control Arm Assembly (BECAA) for precisely manipulating dust clouds levitated above the powered electrode in RF plasmas. The reported techniques allow the creation of perfectly 2D dust layers by eliminating off-plane particles by moving the electrode from outside the plasma chamber without altering the plasma conditions. The tilting and moving of electrodes using BECAA also allows the precise and repeatable elimination of dust particles one by one to achieve any desired number of grains N without trial and error...
May 1, 2024: Review of Scientific Instruments
https://read.qxmd.com/read/38717549/danicamtiv-affected-isometric-force-and-cross-bridge-kinetics-similarly-in-skinned-myocardial-strips-from-male-and-female-rats
#6
JOURNAL ARTICLE
Peter O Awinda, Blake J Vander Top, Kyrah L Turner, Bertrand C W Tanner
Myotropes are pharmaceuticals that have recently been developed or are under investigation for the treatment of heart diseases. Myotropes have had varied success in clinical trials. Initial research into myotropes have widely focused on animal models of cardiac dysfunction in comparison with normal animal cardiac physiology-primarily using males. In this study we examined the effect of danicamtiv, which is one type of myotrope within the class of myosin activators, on contractile function in permeabilized (skinned) myocardial strips from male and female Sprague-Dawley rats...
May 8, 2024: Journal of Muscle Research and Cell Motility
https://read.qxmd.com/read/38717452/prevalence-of-polymyxin-resistant-bacterial-strains-in-india-a-systematic-review-and-meta-analysis
#7
JOURNAL ARTICLE
Sambit K Dwibedy, Indira Padhy, Aditya K Panda, Saswat S Mohapatra
INTRODUCTION: Polymyxins, the cationic lipopeptide antibiotics, are the last line of therapeutics against the MDR Gram-negative bacterial (GNB) pathogens. Unfortunately, the rising cases of polymyxin-resistant strains from across the globe have adversely impacted their utility. While the molecular mechanisms responsible for developing polymyxin resistance (PolR) are largely understood, the prevalence of PolR strains in India has not been investigated systematically. The current study was undertaken to primarily determine the prevalence of PolR strains in India...
May 8, 2024: Journal of Antimicrobial Chemotherapy
https://read.qxmd.com/read/38717380/confronting-tuberculosis-a-synthetic-quinoline-isonicotinic-acid-hydrazide-hybrid-compound-as-a-potent-lead-molecule-against-mycobacterium-tuberculosis
#8
JOURNAL ARTICLE
Govinda Raju Vadankula, Vipul V Nilkanth, Arshad Rizvi, Sriram Yandrapally, Anushka Agarwal, Hepshibha Chirra, Rashmita Biswas, Mohammed Arifuddin, Vijay Nema, Alvala Mallika, Shekhar C Mande, Sharmistha Banerjee
The current tuberculosis (TB) treatment is challenged by a complex first-line treatment for drug-sensitive (DS) TB. Additionally, the prevalence of multidrug (MDR)- and extensively drug (XDR)-resistant TB necessitates the search for new drug prototypes. We synthesized and screened 30 hybrid compounds containing aminopyridine and 2-chloro-3-formyl quinoline to arrive at a compound with potent antimycobacterial activity, UH-NIP-16. Subsequently, antimycobacterial activity against DS and MDR Mycobacterium tuberculosis ( M...
May 8, 2024: ACS Infectious Diseases
https://read.qxmd.com/read/38717312/herbicide-safener-isoxadifen-ethyl-associated-with-increased-goss-s-wilt-severity-in-corn-zea-mays
#9
JOURNAL ARTICLE
Nathan H Haugrud, Andrew Friskop, Joseph T Ikley
BACKGROUND: Goss's bacterial wilt and leaf blight (Goss's wilt), caused by the bacterium Clavibacter nebraskensis, is a corn disease that has been a top ten yield-reducing disease in North America in the past 15 years. Isoxadifen-ethyl is an herbicide safener that effectively increases cytochrome P450 activity in corn which enhances a plant's metabolism of herbicide molecules. Recent research found a potential link between isoxadifen-ethyl and increased Goss's wilt severity. RESULTS: The application of isoxadifen-ethyl increased (P = 0...
May 8, 2024: Pest Management Science
https://read.qxmd.com/read/38717207/underwater-sound-speed-profile-estimation-from-vessel-traffic-recordings-and-multi-view-neural-networks
#10
JOURNAL ARTICLE
Joseph L Walker, Zheng M Zeng, Vanessa M ZoBell, Kaitlin E Frasier
Sound speed is a critical parameter in ocean acoustic studies, as it determines the propagation and interpretation of recorded sounds. The potential for exploiting oceanic vessel noise as a sound source of opportunity to estimate ocean sound speed profile is investigated. A deep learning-based inversion scheme, relying upon the underwater radiated noise of moving vessels measured by a single hydrophone, is proposed. The dataset used for this study consists of Automatic Identification System data and acoustic recordings of maritime vessels transiting through the Santa Barbara Channel between January 2015 and December 2017...
May 1, 2024: Journal of the Acoustical Society of America
https://read.qxmd.com/read/38716756/enhanced-mri-radiomics-based-model-for-predicting-recurrence-or-metastasis-of-nasopharyngeal-cancer-nc-undergoing-concurrent-chemoradiotherapy-a-retrospective-study
#11
JOURNAL ARTICLE
Lina Song, Junjie Liu, Yu Shang, Yan Hu, Junyan Zhang, Yingjian Ye, Xianqun Ji, Peng An
Nasopharyngeal Carcinoma (NC) refers to the malignant tumor that occurs at the top and side walls of the nasopharyngeal cavity. The NC incidence rate always dominates the first among the malignant tumors of the ear, nose and throat, and mainly occurs in Asia. NC cases are mainly concentrated in southern provinces in China, with about 4 million existing NC. With the pollution of environment and pickled diet, and the increase of life pressure, the domestic NC incidence rate has reached 4.5-6.5/100000 and is increasing year by year...
2024: Cancer Control: Journal of the Moffitt Cancer Center
https://read.qxmd.com/read/38716727/circadian-transcriptome-of-pancreatic-adenocarcinoma-unravels-chronotherapeutic-targets
#12
JOURNAL ARTICLE
Deepak Sharma, Darbaz Adnan, Mostafa K Abdel-Reheem, Ron C Anafi, Daniel D Leary, Faraz Bishehsari
Pancreatic ductal adenocarcinoma (PDA) is a lethal cancer characterized by a poor outcome and an increasing incidence. A significant majority (>80%) of newly diagnosed cases are deemed unresectable, leaving chemotherapy as the sole viable option, though with only moderate success. This necessitates the identification of improved therapeutic options for PDA. We hypothesized that there are temporal variations in cancer-relevant processes within PDA tumors, offering insights into the optimal timing of drug administration - a concept termed chronotherapy...
May 8, 2024: JCI Insight
https://read.qxmd.com/read/38716689/cholinergic-modulation-of-motor-sequence-learning
#13
JOURNAL ARTICLE
Angela Voegtle, Catharina Mohrbutter, Jonathan Hils, Steve Schulz, Alexander Weuthen, Uwe Brämer, Markus Ullsperger, Catherine M Sweeney-Reed
The cholinergic system plays a key role in motor function, but whether pharmacological modulation of cholinergic activity affects motor sequence learning is unknown. The acetylcholine receptor antagonist biperiden, an established treatment in movement disorders, reduces attentional modulation, but whether it influences motor sequence learning is not clear. Using a randomized, double-blind placebo-controlled crossover design, we tested 30 healthy young participants and showed that biperiden impairs the ability to learn sequential finger movements, accompanied by widespread oscillatory broadband power changes (4-25 Hz) in the motor sequence learning network after receiving biperiden, with greater power in the theta, alpha and beta bands over ipsilateral motor and bilateral parietal-occipital areas...
May 8, 2024: European Journal of Neuroscience
https://read.qxmd.com/read/38716667/association-between-prescription-drug-monitoring-program-use-mandate-and-opioid-prescribing-and-patient-reported-outcomes-after-surgery
#14
JOURNAL ARTICLE
Kao-Ping Chua, Thuy D Nguyen, Chad M Brummett, Amy S Bohnert, Vidhya Gunaseelan, Michael J Englesbe, Stephanie Lee, Jennifer F Waljee
OBJECTIVE: To evaluate changes in opioid prescribing and patient-reported outcomes after surgery following implementation of Michigan's prescription drug monitoring program (PDMP) use mandate in June 2018. BACKGROUND: Most states mandate clinicians to query prescription drug monitoring program (PDMP) databases before prescribing controlled substances. Whether these PDMP use mandates affect opioid prescribing and patient-reported outcomes after surgery is unclear, especially among patients with elevated "Narx" scores, a risk score for overdose death used in most PDMPs...
May 8, 2024: Annals of Surgery
https://read.qxmd.com/read/38716374/potential-association-of-gut-microbial-metabolism-and-circulating-mrna-based-on-multiomics-sequencing-analysis-in-fetal-growth-restriction
#15
JOURNAL ARTICLE
Hui Tang, Dan Li, Jing Peng, Weitao Yang, Xian Zhang, Hanmei Li
OBJECTIVE: Fetal growth restriction (FGR) is a significant contributor to negative pregnancy and postnatal developmental outcomes. Currently, the exact pathological mechanism of FGR remains unknown. This study aims to utilize multiomics sequencing technology to investigate potential relationships among mRNA, gut microbiota, and metabolism in order to establish a theoretical foundation for diagnosing and understanding the molecular mechanisms underlying FGR. METHODS: In this study, 11 healthy pregnant women and nine pregnant women with FGR were divided into Control group and FGR group based on the health status...
2024: Mediators of Inflammation
https://read.qxmd.com/read/38716347/malignant-glioma-in-l-2-hydroxyglutaric-aciduria-thorough-molecular-characterization-of-a-case-and-literature-review
#16
JOURNAL ARTICLE
Fleur Cordier, Pieter Wesseling, Bastiaan B J Tops, Lennart Kester, Pim J French, Martin van den Bent, Felix Hinz, Eleonora Aronica, K Mariam Slot, Floor Abbink, Marjo S van der Knaap, Mariëtte E G Kranendonk
L-2-hydroxyglutaric aciduria (L-2-HGA) is a rare neurometabolic disorder characterized by accumulation of L2-hydroxyglutarate (L-2-HG) due to mutations in the L2HGDH gene. L-2-HGA patients have a significantly increased lifetime risk of central nervous system (CNS) tumors. Here, we present a 16-year-old girl with L-2-HGA who developed a tumor in the right cerebral hemisphere, which was discovered after left-sided neurological deficits of the patient. Histologically, the tumor had a high-grade diffuse glioma phenotype...
January 2024: Free neuropathology
https://read.qxmd.com/read/38716195/integrating-machine-learning-algorithms-and-single-cell-analysis-to-identify-gut-microbiota-related-macrophage-biomarkers-in-atherosclerotic-plaques
#17
JOURNAL ARTICLE
Yin Ke, Jian Yue, Jiaming He, Guojing Liu
OBJECTIVE: The relationship between macrophages and the gut microbiota in patients with atherosclerosis remains poorly defined, and effective biological markers are lacking. This study aims to elucidate the interplay between gut microbial communities and macrophages, and to identify biomarkers associated with the destabilization of atherosclerotic plaques. The goal is to enhance our understanding of the underlying molecular pathways and to pave new avenues for diagnostic approaches and therapeutic strategies in the disease...
2024: Frontiers in Cellular and Infection Microbiology
https://read.qxmd.com/read/38716175/-lost-in-translation-the-readability-discrepancy-of-online-patient-educational-materials-for-pcl-surgery
#18
JOURNAL ARTICLE
Kuan-Yu Lin, Rena G Wang, Saleh Hassan, Andi Zhang, Scott G Kaar
OBJECTIVES: While the internet provides accessible medical information, often times it does not cater to the average patient's ability to understand medical text at a 6th and 8th grade reading level, per American Medical Association (AMA)/National Institute of Health (NIH) recommendations. This study looks to analyze current online materials relating to posterior cruciate ligament (PCL) surgery and their readability, understandability, and actionability. METHODS: The top 100 Google searchs for "PCL surgery" were compiled...
2024: Archives of Bone and Joint Surgery
https://read.qxmd.com/read/38716166/broad-scale-acoustic-monitoring-of-koala-populations-suggests-metapopulation-stability-but-varying-bellow-rate-in-the-face-of-major-disturbances-and-climate-extremes
#19
JOURNAL ARTICLE
Bradley Law, Leroy Gonsalves, Traecey Brassil, Isobel Kerr
Population trends are lacking for most threatened species, especially those that are cryptic and difficult to survey. Recent developments in passive acoustics and semi-automated call recognition provide a cost-effective option to systematically monitor populations of vocal species. We assessed recent trends for the koala Phascolarctos cinereus , an iconic marsupial, based on 7 years of acoustic monitoring across 224 forested sites. The study period overlapped with a severe drought and extensive megafires in 2019 followed by 2 years of extremely high rainfall...
May 2024: Ecology and Evolution
https://read.qxmd.com/read/38716075/tissue-clearing-method-in-visualization-of-cancer-progression-and-metastasis
#20
REVIEW
Kei Takahashi-Yamashiro, Kohei Miyazono
Since various imaging modalities have been developed, cancer metastasis can be detected from an early stage. However, limitations still exist, especially in terms of spatial resolution. Tissue-clearing technology has emerged as a new imaging modality in cancer research, which has been developed and utilized for a long time mainly in neuroscience field. This method enables us to detect cancer metastatic foci with single-cell resolution at whole mouse body/organ level. On top of that, 3D images of cancer metastasis of whole mouse organs make it easy to understand their characteristics...
2024: Upsala Journal of Medical Sciences
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