keyword
https://read.qxmd.com/read/37150324/assembly-properties-of-spiroplasma-mreb-involved-in-swimming-motility
#21
JOURNAL ARTICLE
Daichi Takahashi, Makoto Miyata, Ikuko Fujiwara
Bacterial actin MreB forms filaments formed of antiparallel double strand units. The wall-less helical bacterium Spiroplasma has five MreB homologs (MreB1-5), some of which are involved in an intra-cellular ribbon for driving the bacterium's swimming motility. Although the interaction between MreB units is important for understanding Spiroplasma swimming, the interaction modes of each ribbon component are unclear. Here, we examined the assembly properties of Spiroplasma eriocheiris MreB5 (SpeMreB5), one of the ribbon component proteins that forms sheets...
May 5, 2023: Journal of Biological Chemistry
https://read.qxmd.com/read/37077288/novel-mreb-inhibitors-with-antibacterial-activity-against-gram-bacteria
#22
JOURNAL ARTICLE
Hye Yeon Sagong, Jesus D Rosado-Lugo, Eric J Bryan, Edgar Ferrer-González, Yiling Wang, Yanlu Cao, Ajit K Parhi, Daniel S Pilch, Edmond J LaVoie
MreB is a cytoskeleton protein present in rod-shaped bacteria that is both essential for bacterial cell division and highly conserved. Because most Gram (-) bacteria require MreB for cell division, chromosome segregation, cell wall morphogenesis, and cell polarity, it is an attractive target for antibacterial drug discovery. As MreB modulation is not associated with the activity of antibiotics in clinical use, acquired resistance to MreB inhibitors is also unlikely. Compounds, such as A22 and CBR-4830, are known to disrupt MreB function by inhibition of ATPase activity...
October 2022: Medicinal Chemistry Research
https://read.qxmd.com/read/37039698/intracellular-phage-tail-like-nanostructures-affect-susceptibility-of-streptomyces-lividans-to-osmotic-stress
#23
JOURNAL ARTICLE
Toshiki Nagakubo, Shumpei Asamizu, Tatsuya Yamamoto, Manami Kato, Tatsuya Nishiyama, Masanori Toyofuku, Nobuhiko Nomura, Hiroyasu Onaka
Contractile injection systems (CISs) are a large group of phage tail-like nanostructures conserved among bacteria. Despite their wide distribution, the biological significance of CISs in bacteria remains largely unclear except for a few unicellular bacteria. Here, we show that Streptomyces lividans-a model organism of filamentous Gram-positive bacteria with highly conserved CIS-related gene clusters-produces intracellular CIS-like nanostructures ( Streptomyces phage tail-like particles [SLPs]) that affect phenotypes of this bacterium under hyperosmotic conditions...
April 11, 2023: MSphere
https://read.qxmd.com/read/37033705/sequence-analyses-of-a-lipoprotein-conserved-with-bacterial-actins-responsible-for-swimming-motility-of-wall-less-helical-spiroplasma
#24
JOURNAL ARTICLE
Daichi Takahashi, Makoto Miyata
Spiroplasma is a genus of pathogenic or commensal cell-wall-deficient helical bacterium. Spiroplasma -specific protein fibril and five classes of bacterial actins, MreB1-5, are involved in a helical ribbon structure responsible for helical-cell morphology and swimming motility. A gene for a hypothetical protein-SPE_1229, 7th protein-has been found in the locus coding mreB s. In this study, we characterized the 7th protein using in silico methods and found that it could be a lipoprotein whose gene is encoded downstream of mreB3 and conserved in a clade of Spiroplasma ...
2023: microPublication. Biology
https://read.qxmd.com/read/37017481/quantitative-analysis-of-morphogenesis-and-growth-dynamics-in-an-obligate-intracellular-bacterium
#25
JOURNAL ARTICLE
Wanda M Figueroa-Cuilan, Oihane Irazoki, Marissa Feeley, Erika Smith, Trung Nguyen, Felipe Cava, Erin D Goley
Obligate intracellular bacteria of the order Rickettsiales include important human pathogens. However, our understanding of the biology of Rickettsia species is limited by challenges imposed by their obligate intracellular lifestyle. To overcome this roadblock, we developed methods to assess cell wall composition, growth, and morphology of Rickettsia parkeri , a human pathogen in the Spotted Fever Group of the Rickettsia genus. Analysis of the cell wall of R. parkeri revealed unique features that distinguish it from free-living alphaproteobacteria...
April 5, 2023: Molecular Biology of the Cell
https://read.qxmd.com/read/37010431/visualization-of-wall-teichoic-acid-decoration-in-bacillus-subtilis
#26
JOURNAL ARTICLE
Yutaka Koyano, Kiyoshirou Okajima, Mako Mihara, Hiroki Yamamoto
Teichoic acids are important for the maintenance of cell shape and growth in Gram-positive bacteria. Bacillus subtilis produces major and minor forms of wall teichoic acid (WTA) and lipoteichoic acid during vegetative growth. We found that newly synthesized WTA attachment to peptidoglycan occurs in a patch-like manner on the sidewall with the fluorescent labeling compound of the concanavalin A lectin. Similarly, WTA biosynthesis enzymes fused to the epitope tags were localized in similar patch-like patterns on the cylindrical part of the cell, and WTA transporter TagH was frequently colocalized with WTA polymerase TagF, WTA ligase TagT, and actin homolog MreB, respectively...
April 3, 2023: Journal of Bacteriology
https://read.qxmd.com/read/36842130/purification-and-atpase-activity-measurement-of-spiroplasma-mreb
#27
JOURNAL ARTICLE
Daichi Takahashi, Ikuko Fujiwara, Makoto Miyata
Spiroplasma is a genus of wall-less helical bacteria with swimming motility unrelated to conventional types of bacterial motility machinery, such as flagella and pili. The swimming of Spiroplasma is suggested to be driven by five classes of MreB (MreB1-MreB5), which are members of the actin superfamily. In vitro studies of Spiroplasma MreBs have recently been conducted to evaluate their activities, such as ATPase, which is essential for the polymerization dynamics among classic actin superfamily proteins...
2023: Methods in Molecular Biology
https://read.qxmd.com/read/36797487/growth-rate-is-modulated-by-monitoring-cell-wall-precursors-in-bacillus-subtilis
#28
JOURNAL ARTICLE
Yingjie Sun, Sylvia Hürlimann, Ethan Garner
How bacteria link their growth rate to external nutrient conditions is unknown. To investigate how Bacillus subtilis cells alter the rate at which they expand their cell walls as they grow, we compared single-cell growth rates of cells grown under agar pads with the density of moving MreB filaments under a variety of growth conditions. MreB filament density increases proportionally with growth rate. We show that both MreB filament density and growth rate depend on the abundance of Lipid II and murAA, the first gene in the biosynthetic pathway creating the cell wall precursor Lipid II...
February 16, 2023: Nature Microbiology
https://read.qxmd.com/read/36778245/a-role-for-the-gram-negative-outer-membrane-in-bacterial-shape-determination
#29
Elayne M Fivenson, Patricia D A Rohs, Andrea Vettiger, Marios F Sardis, Grasiela Torres, Alison Forchoh, Thomas G Bernhardt
UNLABELLED: The cell envelope of Gram-negative bacteria consists of three distinct layers: the cytoplasmic membrane, a cell wall made of peptidoglycan (PG), and an asymmetric outer membrane (OM) composed of phospholipid in the inner leaflet and lipopolysaccharide (LPS) glycolipid in the outer leaflet. The PG layer has long been thought to be the major structural component of the envelope protecting cells from osmotic lysis and providing them with their characteristic shape. In recent years, the OM has also been shown to be a load-bearing layer of the cell surface that fortifies cells against internal turgor pressure...
February 4, 2023: bioRxiv
https://read.qxmd.com/read/36738854/laboratory-evolution-reveals-general-and-specific-tolerance-mechanisms-for-commodity-chemicals
#30
JOURNAL ARTICLE
Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist
Although strain tolerance to high product concentrations is a barrier to the economically viable biomanufacturing of industrial chemicals, chemical tolerance mechanisms are often unknown. To reveal tolerance mechanisms, an automated platform was utilized to evolve Escherichia coli to grow optimally in the presence of 11 industrial chemicals (1,2-propanediol, 2,3-butanediol, glutarate, adipate, putrescine, hexamethylenediamine, butanol, isobutyrate, coumarate, octanoate, hexanoate), reaching tolerance at concentrations 60%-400% higher than initial toxic levels...
February 2, 2023: Metabolic Engineering
https://read.qxmd.com/read/36596126/transcriptome-analysis-reveals-the-molecular-mechanism-of-cinnamaldehyde-against-bacillus-cereus-spores-in-ready-to-eat-beef
#31
JOURNAL ARTICLE
Peng Guan, Yuting Chang, Sen Li, Xiaojie Wang, Zijie Dong, Weitao Zhou, Qi Zheng, Zhongmin Huang, Biao Suo
The purpose of this study was to investigate the antibacterial effect and mechanism of cinnamaldehyde on Bacillus cereus spores in ready-to-eat beef. The colour difference and texture of the ready-to-eat beef supplemented with cinnamaldehyde did not differ greatly from the colour and texture of the blank beef. However, cinnamaldehyde has an effective antibacterial effect on the total number of bacterial colonies and B. cereus spores in ready-to-eat beef. Transmission electron microscopy (TEM) analysis revealed that the cell membrane of B...
January 2023: Food Research International
https://read.qxmd.com/read/36555681/solubility-and-thermal-stability-of-thermotoga-maritima-mreb
#32
JOURNAL ARTICLE
Beáta Longauer, Emőke Bódis, András Lukács, Szilvia Barkó, Miklós Nyitrai
The basis of MreB research is the study of the MreB protein from the Thermotoga maritima species, since it was the first one whose crystal structure was described. Since MreB proteins from different bacterial species show different polymerisation properties in terms of nucleotide and salt dependence, we conducted our research in this direction. For this, we performed measurements based on tryptophan emission, which were supplemented with temperature-dependent and chemical denaturation experiments. The role of nucleotide binding was studied through the fluorescent analogue TNP-ATP...
December 16, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/36449609/reconstitution-of-a-minimal-motility-system-based-on-spiroplasma-swimming-by-two-bacterial-actins-in-a-synthetic-minimal-bacterium
#33
JOURNAL ARTICLE
Hana Kiyama, Shigeyuki Kakizawa, Yuya Sasajima, Yuhei O Tahara, Makoto Miyata
Motility is one of the most important features of life, but its evolutionary origin remains unknown. In this study, we focused on Spiroplasma , commensal, or parasitic bacteria. They swim by switching the helicity of a ribbon-like cytoskeleton that comprises six proteins, each of which evolved from a nucleosidase and bacterial actin called MreB. We expressed these proteins in a synthetic, nonmotile minimal bacterium, JCVI-syn3B, whose reduced genome was computer-designed and chemically synthesized. The synthetic bacterium exhibited swimming motility with features characteristic of Spiroplasma swimming...
December 2, 2022: Science Advances
https://read.qxmd.com/read/36382191/multiple-conserved-states-characterize-the-twist-landscape-of-the-bacterial-actin-homolog-mreb
#34
JOURNAL ARTICLE
Benjamin D Knapp, Michael D Ward, Gregory R Bowman, Handuo Shi, Kerwyn Casey Huang
Filament formation by cytoskeletal proteins is critical to their involvement in myriad cellular processes. The bacterial actin homolog MreB, which is essential for cell-shape determination in many rod-shaped bacteria, has served as a model system for studying the mechanics of cytoskeletal filaments. Previous molecular dynamics (MD) simulations revealed that the twist of MreB double protofilaments is dependent on the bound nucleotide, as well as binding to the membrane or the accessory protein RodZ, and MreB mutations that modulate twist also affect MreB spatial organization and cell shape...
2022: Computational and Structural Biotechnology Journal
https://read.qxmd.com/read/36376306/cytoskeletal-components-can-turn-wall-less-spherical-bacteria-into-kinking-helices
#35
JOURNAL ARTICLE
Carole Lartigue, Bastien Lambert, Fabien Rideau, Yorick Dahan, Marion Decossas, Mélanie Hillion, Jean-Paul Douliez, Julie Hardouin, Olivier Lambert, Alain Blanchard, Laure Béven
Bacterial cell shape is generally determined through an interplay between the peptidoglycan cell wall and cytoplasmic filaments made of polymerized MreB. Indeed, some bacteria (e.g., Mycoplasma) that lack both a cell wall and mreB genes consist of non-motile cells that are spherical or pleomorphic. However, other members of the same class Mollicutes (e.g., Spiroplasma, also lacking a cell wall) display a helical cell shape and kink-based motility, which is thought to rely on the presence of five MreB isoforms and a specific fibril protein...
November 14, 2022: Nature Communications
https://read.qxmd.com/read/36304570/outer-membrane-anchoring-enables-lpob-to-regulate-peptidoglycan-synthesis-rate
#36
JOURNAL ARTICLE
Ali A Kermani, Jacob Biboy, Daniela Vollmer, Waldemar Vollmer
Peptidoglycan (PG) is an essential component of the cell envelope in most bacteria, responsible for maintaining the shape of the cell and protecting the cell from environmental stresses. The growth of the PG layer during cell elongation and division is facilitated by the coordinated activities of PG synthases and hydrolases. PG synthases are regulated from inside the cell by components of the elongasome and divisome complexes driven by the cytoskeletal proteins MreB and FtsZ. In Escherichia coli the PG synthases PBP1A and PBP1B require the activation by outer membrane (OM)-anchored lipoproteins LpoA and LpoB, respectively...
December 2022: Cell Surface
https://read.qxmd.com/read/36285441/atp-dependent-polymerization-dynamics-of-bacterial-actin-proteins-involved-in-spiroplasma-swimming
#37
JOURNAL ARTICLE
Daichi Takahashi, Ikuko Fujiwara, Yuya Sasajima, Akihiro Narita, Katsumi Imada, Makoto Miyata
MreB is a bacterial protein belonging to the actin superfamily. This protein polymerizes into an antiparallel double-stranded filament that determines cell shape by maintaining cell wall synthesis. Spiroplasma eriocheiris , a helical wall-less bacterium, has five MreB homologous (SpeMreB1-5) that probably contribute to swimming motility. Here, we investigated the structure, ATPase activity and polymerization dynamics of SpeMreB3 and SpeMreB5. SpeMreB3 polymerized into a double-stranded filament with possible antiparallel polarity, while SpeMreB5 formed sheets which contained the antiparallel filament, upon nucleotide binding...
October 2022: Open Biology
https://read.qxmd.com/read/36274716/isolation-and-structure-of-the-fibril-protein-a-major-component-of-the-internal-ribbon-for-spiroplasma-swimming
#38
JOURNAL ARTICLE
Yuya Sasajima, Takayuki Kato, Tomoko Miyata, Akihiro Kawamoto, Keiichi Namba, Makoto Miyata
Spiroplasma , which are known pathogens and commensals of arthropods and plants, are helical-shaped bacteria that lack a peptidoglycan layer. Spiroplasma swim by alternating between left- and right-handed helicity. Of note, this system is not related to flagellar motility, which is widespread in bacteria. A helical ribbon running along the inner side of the helical cell should be responsible for cell helicity and comprises the bacterial actin homolog, MreB, and a protein specific to Spiroplasma , fibril. Here, we isolated the ribbon and its major component, fibril filament, for electron microscopy (EM) analysis...
2022: Frontiers in Microbiology
https://read.qxmd.com/read/36199205/enzyme-1-of-the-phosphoenolpyruvate-sugar-phosphotransferase-system-is-involved-in-resistance-to-mreb-disruption-in-wild-type-and-%C3%A2-envc-cells
#39
JOURNAL ARTICLE
Ryan Sloan, Jacob Surber, Emma J Roy, Ethan Hartig, Randy M Morgenstein
Cell wall synthesis in bacteria is determine by two protein complexes: the elongasome and divisome. The elongasome is coordinated by the actin homolog MreB while the divisome is organized by the tubulin homolog FtsZ. While these two systems must coordinate with each other to ensure that elongation and division are coregulated, this cross talk has been understudied. Using the MreB depolymerizing agent, A22, we found that multiple gene deletions result in cells exhibiting increased sensitivity to MreB depolymerization...
October 5, 2022: Molecular Microbiology
https://read.qxmd.com/read/36143472/the-role-of-mreb-mrec-and-mred-in-the-morphology-of-the-diazotrophic-filament-of-anabaena-sp-pcc-7120
#40
JOURNAL ARTICLE
Cristina Velázquez-Suárez, Ignacio Luque, Antonia Herrero
The cyanobacterium Anabaena sp. PCC 7120 forms filaments of communicating cells. Under conditions of nitrogen scarcity, some cells differentiate into heterocysts, allowing the oxygen-sensitive N2 -reduction system to be expressed and operated in oxic environments. The key to diazotrophic growth is the exchange of molecules with nutritional and signaling functions between the two types of cells of the filament. During heterocyst differentiation, the peptidoglycan sacculus grows to allow cell enlargement, and the intercellular septa are rebuilt to narrow the contact surface with neighboring cells and to hold specific transport systems, including the septal junction complexes for intercellular molecular transfer, which traverse the periplasm between heterocysts and neighboring vegetative cells through peptidoglycan nanopores...
September 15, 2022: Life
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