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https://www.readbyqxmd.com/read/28530547/application-of-machine-learning-approaches-for-protein-protein-interactions-prediction
#1
Mengying Zhang, Qiang Su, Yi Lu, Manman Zhao, Bing Niu
BACKGROUND: Proteomics endeavors to study the structures, functions and interactions of proteins. Information of the protein-protein interactions (PPIs) helps to improve our knowledge of the functions and the 3D structures of proteins. Thus determining the PPIs is essential for the study of the proteomics. OBJECTIVE: In this review, in order to study the application of machine learning in predicting PPI, some machine learning approaches such as support vector machine (SVM), artificial neural networks (ANNs) and random forest (RF) were selected, and the examples of its applications in PPIs were listed...
May 22, 2017: Medicinal Chemistry
https://www.readbyqxmd.com/read/28529464/trap-design-and-construction-for-high-power-multinuclear-magnetic-resonance-experiments
#2
Joseph V Rispoli, Ivan E Dimitrov, Sergey Cheshkov, Craig Malloy, Steven M Wright, Mary P McDougall
Performing multinuclear experiments requires one or more radiofrequency (RF) coils operating at both the proton and second-nucleus frequencies; however, inductive coupling between coils must be mitigated to retain proton sensitivity and coil tuning stability. The inclusion of trap circuits simplifies placement of multinuclear RF coils while maintaining inter-element isolation. Of the commonly investigated non-proton nuclei, perhaps the most technically demanding is carbon-13, particularly when applying a proton decoupling scheme to improve the resulting spectra...
October 2016: Concepts in Magnetic Resonance. Part B, Magnetic Resonance Engineering
https://www.readbyqxmd.com/read/28528901/responses-to-spatial-contrast-in-the-mouse-suprachiasmatic-nuclei
#3
Joshua W Mouland, Adam R Stinchcombe, Daniel B Forger, Timothy M Brown, Robert J Lucas
A direct retinal projection targets the suprachiasmatic nucleus (SCN) (an important hypothalamic control center). The accepted function of this projection is to convey information about ambient light (irradiance) to synchronize the SCN's endogenous circadian clock with local time and drive the diurnal variations in physiology and behavior [1-4]. Here, we report that it also renders the SCN responsive to visual images. We map spatial receptive fields (RFs) for SCN neurons and find that only a minority are excited (or inhibited) by light from across the scene as expected for irradiance detectors...
May 11, 2017: Current Biology: CB
https://www.readbyqxmd.com/read/28527736/the-effects-of-non-invasive-radiofrequency-electric-field-hyperthermia-on-biotransport-and-biodistribution-of-fluorescent-60-fullerene-derivative-in-a-murine-orthotopic-model-of-breast-adenocarcinoma
#4
Norman A Lapin, Martyna Krzykawska-Serda, Sean Dilliard, Yuri Mackeyev, Maciej Serda, Lon J Wilson, Steven A Curley, Stuart J Corr
The aim of this study is to understand the combined and differential biokinetic effects of radiofrequency (RF) electric-field hyperthermia as an adjunctive therapy to [60]fullerene nanoparticle-based drug delivery systems in targeting the micro-vasculature and micro-environments of breast cancer tumors. Intravital microscopy (IVM) is an ideal tool to provide the spatial and temporal resolution needed for quantification in this investigation. The water-soluble and fluorescent [60]fullerene derivative (C60-serPF) was designed to be an amphiphilic nanostructure, which is able to cross several biological membranes and accumulate in tumor tissues by passing through abnormally leaky tumor blood vessels...
May 17, 2017: Journal of Controlled Release: Official Journal of the Controlled Release Society
https://www.readbyqxmd.com/read/28526580/biomarkers-for-rheumatoid-arthritis-from-molecular-processes-to-diagnostic-applications-current-concepts-and-future-perspectives
#5
REVIEW
Britt Nakken, Gábor Papp, Vidar Bosnes, Margit Zeher, György Nagy, Peter Szodoray
Early diagnosis and immediately started appropriate treatment are mandatory for the prevention of radiographic progression, functional disability and unfavourable disease outcome in rheumatoid arthritis (RA). The current classification criteria for RA include two different types of biomarkers representing inflammatory processes, such as C-reactive protein (CRP) and erythrocyte sedimentation rate (ESR) or immune processes including autoantibodies, such as rheumatoid factor (RF) and antibodies against citrullinated proteins (ACPA)...
May 16, 2017: Immunology Letters
https://www.readbyqxmd.com/read/28526226/experimental-pain-in-the-groin-may-refer-into-the-lower-abdomen-implications-to-clinical-assessments
#6
M K Drew, T S Palsson, R P Hirata, M Izumi, G Lovell, M Welvaert, P Chiarelli, P G Osmotherly, T Graven-Nielsen
OBJECTIVES: To investigate the effects of experimental adductor pain on the pain referral pattern, mechanical sensitivity and muscle activity during common clinical tests. DESIGN: Repeated-measures design. METHODS: In two separate sessions, 15 healthy males received a hypertonic (painful) and isotonic (control) saline injection to either the adductor longus (AL) tendon to produce experimental groin pain or into the rectus femoris (RF) tendon as a painful control...
April 21, 2017: Journal of Science and Medicine in Sport
https://www.readbyqxmd.com/read/28525713/identification-and-validation-of-sensory-active-compounds-from-data-driven-research-a-flavoromics-approach
#7
Ian Ronningen, Michelle Miller, Youlin Xia, Devin G Peterson
In the current study significant LC/MS features, from multivariate analysis (MVA) models developed using untargeted chemical fingerprinting to characterize flavor changes in extracts of citrus fruits related to aging, were further isolated and analyzed for sensory relevant information, followed by structural elucidation of flavor actives. The top ten statistical features from two MVA approaches, partial least squares data analysis (PLS-DA) and Random Forrest (RF), were purified to approximately 70% via multi-dimensional liquid chromatography-mass directed fractionation to screen for sensory activity...
May 19, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/28524646/cervical-spine-involvement-risk-factors-in-rheumatoid-arthritis-a-meta-analysis
#8
Shuai Zhu, Wangdong Xu, Yubin Luo, Yi Zhao, Yi Liu
AIM: This study aims to discuss risk factors associated with cervical spine involvement (CSI) in patients with rheumatoid arthritis (RA). METHODS: A literature search was performed in Medline, EMBASE, Web of Science and CBMdisc databases for potential studies published before October 2016. The clinical and laboratory data were extracted, and a meta-analysis was performed to evaluate the risk factors for CSI in RA patients. RESULTS: Twelve studies involving a total of 2750 cases with RA and 733 CSI (26...
May 19, 2017: International Journal of Rheumatic Diseases
https://www.readbyqxmd.com/read/28522849/carcinopred-el-novel-models-for-predicting-the-carcinogenicity-of-chemicals-using-molecular-fingerprints-and-ensemble-learning-methods
#9
Li Zhang, Haixin Ai, Wen Chen, Zimo Yin, Huan Hu, Junfeng Zhu, Jian Zhao, Qi Zhao, Hongsheng Liu
Carcinogenicity refers to a highly toxic end point of certain chemicals, and has become an important issue in the drug development process. In this study, three novel ensemble classification models, namely Ensemble SVM, Ensemble RF, and Ensemble XGBoost, were developed to predict carcinogenicity of chemicals using seven types of molecular fingerprints and three machine learning methods based on a dataset containing 1003 diverse compounds with rat carcinogenicity. Among these three models, Ensemble XGBoost is found to be the best, giving an average accuracy of 70...
May 18, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28521161/visible-light-photo-fenton-oxidation-of-phenol-with-rgo-%C3%AE-feooh-supported-on-al-doped-mesoporous-silica-mcm-41-at-neutral-ph-performance-and-optimization-of-the-catalyst
#10
Ying Wang, Mingxing Liang, Jiasheng Fang, Jun Fu, Xiaochun Chen
In this study, α-FeOOH on reduced graphene oxide (rGO-α-FeOOH) supported on an Al-doped MCM-41 catalyst (RFAM) was optimized for the visible-light photo-Fenton oxidation of phenol at neutral pH. The stability of the catalysts, effect of bubbling aeration, and degradation intermediates were investigated. Results indicated that RFAM with a large Brunauer-Emmett-Teller (BET) area and mesoporous structure displayed excellent catalytic activity for the visible-light-driven (VLD) photo-Fenton process. Phenol degradation was well described by a pseudo-first-order reaction kinetics model...
May 7, 2017: Chemosphere
https://www.readbyqxmd.com/read/28521054/in-silico-prediction-of-drug-induced-liver-injury-based-on-adverse-drug-reaction-reports
#11
Xiang-Wei Zhu, Shao-Jing Li
Drug-induced liver injury (DILI) is a major cause of drug attrition. Currently existing Quantitative Structure-Activity Relationship (QSAR) models have limited predictive capabilities for DILI. Furthermore, their practical applications were limited by lack of new hepatotoxicity data. In this study, we first collected and curated a novel set of 122 DILI-positive and 932 DILI-negative drugs from online adverse drug reports using proportional reporting ratios as the signal detection method. Second, three strategies (under-sampling the majority class, synthetic minority over-sampling technique, and adjusting decision threshold approach) were employed to develop predictive classification models to cope with the unbalanced dataset...
May 17, 2017: Toxicological Sciences: An Official Journal of the Society of Toxicology
https://www.readbyqxmd.com/read/28520908/shortening-of-the-atrial-his-bundle-interval-during-atrial-pacing-as-a-predictor-of-successful-ablation-for-typical-atrioventricular-nodal-re-entrant-tachycardia
#12
Masahiro Nakano, Marehiko Ueda, Yusuke Kondo, Tomohiko Hayashi, Miyo Nakano, Kazuo Miyazawa, Masayuki Ishimura, Yoshio Kobayashi
Aims: Shortening of the atrial-His bundle (AH) interval during the sinus rhythm is occasionally observed after slow pathway ablation for atrioventricular nodal re-entrant tachycardia (AVNRT). In addition, high-rate atrial pacing is useful for avoiding atrioventricular block. We hypothesized that shortening of the AH interval during slow pathway ablation under high-rate atrial pacing would lead to successful ablation of typical AVNRT. Methods and results: This retrospective study included 37 patients in whom successful ablation of typical AVNRT was performed under atrial pacing...
May 17, 2017: Europace: European Pacing, Arrhythmias, and Cardiac Electrophysiology
https://www.readbyqxmd.com/read/28518062/retrograde-flushing-of-living-donor-renal-allografts-via-the-renal-vein-a-simple-effective-technique
#13
Mark J Hobeika, Wasim A Dar, David R Hall, John S Bynon
BACKGROUND: Prograde flushing (PF) of living donor renal allografts with preservation solution via the renal artery or arteries is standard practice. PF may be difficult and potentially injurious to the donor kidney, especially in grafts with small or multiple arteries. In this report we present our experience with retrograde flushing (RF) of 7 living donor kidneys via the renal vein. METHODS: Retrospective review of 7 consecutive living donor renal transplants (LDRT) performed using the RF technique was performed...
October 11, 2016: Transplantation
https://www.readbyqxmd.com/read/28516790/oxidative-effects-of-extremely-low-frequency-magnetic-field-and-radio-frequency-radiation-on-testes-tissues-of-diabetic-and-healthy-rats
#14
D Kuzay, C Ozer, B Sirav, A G Canseven, N Seyhan
With the development of technology, people are increasingly under the exposure of electromagnetic fields. Individuals with chronic diseases such as diabetes are now long-term exposed to Radio Frequency-RF radiation and extremely low frequency (ELF) magnetic fields (MFs). The purpose of this present study is to investigate oxidative effects and antioxidant parameters of ELF MFs and RF radiation on testis tissue in diabetic and healthy rats. Wistar male rats were divided into 10 groups. Intraperitoneal single dose STZ (65 mg/kg) dissolved in citrate buffer (0...
2017: Bratislavské Lekárske Listy
https://www.readbyqxmd.com/read/28516406/degradation-and-adsorption-of-tralkoxydim-in-chinese-soils-and-water-sediment-environments
#15
Wen Zhu Wu, Zheng Jun Shan, De Yang Kong, Jian He
Tralkoxydim is a cyclohexanedione herbicide primarily used for gramineous weed control in China. In this paper, we present results of a tralkoxydim laboratory environmental fate study characterizing its degradation, adsorption, and mobility behavior in three different soils and two water-sediment systems (river and lake) in China. Degradation half-life of tralkoxydim in soil under aerobic conditions was 5.1, 7.7, and 7.9 days in Jiangxi red soil, Taihu paddy soil, and Northeast China black soil, respectively...
June 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28516237/rheumatoid-factor-positivity-increases-all-cause-and-cancer-mortality-a-cohort-study
#16
Joong Kyong Ahn, Jiwon Hwang, Yoosoo Chang, Seungho Ryu
The aim of this study was to determine whether rheumatoid factor (RF) is associated with mortality from all-cause, cardiovascular disease (CVD), and cancer in the healthy adults. We recruited South Korean health check-up examinees without rheumatoid arthritis (RA). A cohort study was performed in 295,837 participants presumably free of osteoarthritis or RA, and who had undergone health screening between 2002 and 2012 and been followed up to determine the risk of all-cause, CVD, and cancer-specific mortality with respect to the presence or titer of RF...
May 17, 2017: Rheumatology International
https://www.readbyqxmd.com/read/28516046/image-quality-assessment-of-a-1-5t-dedicated-magnetic-resonance-simulator-for-radiotherapy-with-a-flexible-radio-frequency-coil-setting-using-the-standard-american-college-of-radiology-magnetic-resonance-imaging-phantom-test
#17
Oi Lei Wong, Jing Yuan, Siu Ki Yu, Kin Yin Cheung
BACKGROUND: A flexible RF coil setting has to be used on an MR-simulator (MR-sim) in the head and neck simulation scan for radiotherapy (RT) purpose, while the image quality might be compromised due to the sub-optimized flexible coil compared to the normal diagnostic radiological (DR) head coil. In this study, we assessed the image quality of an MR-sim by conducting the standard American College of Radiology (ACR) MRI phantom test on a 1.5T MR-sim under RT-setting and comparing it to DR-setting...
April 2017: Quantitative Imaging in Medicine and Surgery
https://www.readbyqxmd.com/read/28516044/design-of-catheter-radio-frequency-coils-using-coaxial-transmission-line-resonators-for-interventional-neurovascular-mr-imaging
#18
Xiaoliang Zhang, Alastair Martin, Caroline Jordan, Prasheel Lillaney, Aaron Losey, Yong Pang, Jeffrey Hu, Mark Wilson, Daniel Cooke, Steven W Hetts
BACKGROUND: It is technically challenging to design compact yet sensitive miniature catheter radio frequency (RF) coils for endovascular interventional MR imaging. METHODS: In this work, a new design method for catheter RF coils is proposed based on the coaxial transmission line resonator (TLR) technique. Due to its distributed circuit, the TLR catheter coil does not need any lumped capacitors to support its resonance, which simplifies the practical design and construction and provides a straightforward technique for designing miniature catheter-mounted imaging coils that are appropriate for interventional neurovascular procedures...
April 2017: Quantitative Imaging in Medicine and Surgery
https://www.readbyqxmd.com/read/28515824/cardiogenic-shock-acute-severe-mitral-regurgitation-and-complete-heart-block-after-cavo-tricuspid-isthmus-atrial-flutter-ablation
#19
Thein Tun Aung, Edward Samuel Roberto, Kevin D Kravitz
Radiofrequency (RF) ablation is the first-line management of cavo-tricuspid isthmus dependent atrial flutter. It has been performed with 95% success rate. Adverse events are very rare. We report the first case of acute severe mitral regurgitation (MR) and complete heart block developed after successful atrial flutter ablation. A 62-year-old female with mild MR presented with palpitations. Surface electrocardiogram was suggestive of isthmus dependent atrial flutter. A duodecapolar mapping catheter showed an atrial flutter with cycle length of 280 ms...
April 2017: Cardiology Research
https://www.readbyqxmd.com/read/28515594/radiofrequency-ablation-of-osteoid-osteoma-in-common-and-technically-challenging-locations-in-pediatric-population
#20
Shaileshkumar Garge, Shyamkumar N Keshava, Vinu Moses, George K Chiramel, Munawwar Ahmed, Suraj Mammen, Vrisha Madhuri
CONTEXT: Percutaneous radiofrequency ablation (RFA) of osteoid osteoma has a high technical and clinical success rate. However, there is limited data on its use in the pediatric population, especially in technically challenging locations. OBJECTIVE: To assess the safety and efficacy of computed tomography (CT)-guided percutaneous RFA of osteoid osteoma in pediatric population. PATIENTS AND METHODS: From June 2009 to May 2014, 30 patients with osteoid osteoma were treated with CT-guided RFA in common (25 cases) and technically challenging (five cases: four near articular surface and one in sacrum) locations...
January 2017: Indian Journal of Radiology & Imaging
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