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https://www.readbyqxmd.com/read/29777597/microdevice-based-solid-phase-polymerase-chain-reaction-for-rapid-detection-of-pathogenic-microorganisms
#1
Quang Nghia Pham, Kieu The Loan Trinh, Seung Won Jung, Nae Yoon Lee
We demonstrate the integration of DNA amplification and detection functionalities developed on a lab-on-a-chip microdevice utilizing solid-phase polymerase chain reaction (SP-PCR) for point-of-need (PON) DNA analyses. First, the polycarbonate microdevice was fabricated by thermal bonding to contain microchambers as reservoirs for performing SP-PCR. Next, the microchambers were subsequently modified with polyethyleneimine and glutaraldehyde for immobilizing amine-modified forward primers. During SP-PCR, the immobilized forward primers and freely diffusing fluorescence-labeled reverse primers cooperated to generate target amplicons, which remained covalently attached to the microchambers for the fluorescence detection...
May 19, 2018: Biotechnology and Bioengineering
https://www.readbyqxmd.com/read/29730413/relationship-between-phytoplankton-community-succession-and-environmental-parameters-in-qinhuangdao-coastal-areas-china-a-region-with-recurrent-brown-tide-outbreaks
#2
Lei Cui, Xinxin Lu, Yuelei Dong, Jingyi Cen, Rongbo Cao, Lin Pan, Songhui Lu, Linjian Ou
The picoplanktonic pelagophyte Aureococcus anophagefferens could trigger harmful algal blooms (HABs) to discolor water in brown, known as brown tide. Since 2009, large-scale brown tides, caused by A. anophagefferens, had been occurred in early summer for three consecutive years in the coastal waters of Qinhuangdao, China and resulted considerable deleterious effects on the scallop mariculture industry. The causes for the occurrence of brown tides were not fully understood. Therefore, we conducted a one-year survey from June 2013 to May 2014 to study the seasonal succession of the phytoplankton community, including A...
May 3, 2018: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/29729034/a-giant-type-i-polyketide-synthase-participates-in-zygospore-maturation-in-chlamydomonas-reinhardtii
#3
Natalie Heimerl, Elisabeth Hommel, Martin Westermann, Doreen Meichsner, Martin Lohr, Christian Hertweck, Arthur R Grossman, Maria Mittag, Severin Sasso
Polyketide synthases (PKSs) occur in many bacteria, fungi and plants. They are highly versatile enzymes involved in the biosynthesis of a large variety of compounds including antimicrobial agents, polymers associated with bacterial cell walls and plant pigments. While harmful algae are known to produce polyketide toxins, sequences of the genomes of non-toxic algae, including those of many green-algal species, have surprisingly revealed the presence of genes encoding type I PKSs. The genome of the model alga Chlamydomonas reinhardtii (Chlorophyta) contains a single type I PKS gene, designated PKS1 (Cre10...
May 4, 2018: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/29725322/infection-by-a-giant-virus-aav-induces-widespread-physiological-reprogramming-in-aureococcus-anophagefferens-ccmp1984-a-harmful-bloom-algae
#4
Mohammad Moniruzzaman, Eric R Gann, Steven W Wilhelm
While viruses with distinct phylogenetic origins and different nucleic acid types can infect and lyse eukaryotic phytoplankton, "giant" dsDNA viruses have been found to be associated with important ecological processes, including the collapse of algal blooms. However, the molecular aspects of giant virus-host interactions remain largely unknown. Aureococcus anophagefferens virus (AaV), a giant virus in the Mimiviridae clade, is known to play a critical role in regulating the fate of brown tide blooms caused by the pelagophyte Aureococcus anophagefferens...
2018: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29693413/edible-insects-defining-knowledge-gaps-in-biological-and-ethical-considerations-of-entomophagy
#5
Isabella Pali-Schöll, Regina Binder, Yves Moens, Friedrich Polesny, Susana Monsó
While seeking novel food sources to feed the increasing population of the globe, several alternatives have been discussed, including algae, fungi or in vitro meat. The increasingly propagated usage of farmed insects for human nutrition raises issues regarding food safety, consumer information and animal protection. In line with law, insects like any other animals must not be reared or manipulated in a way that inflicts unnecessary pain, distress or harm on them. Currently, there is a great need for research in the area of insect welfare, especially regarding species-specific needs, health, farming systems and humane methods of killing...
April 25, 2018: Critical Reviews in Food Science and Nutrition
https://www.readbyqxmd.com/read/29653309/bioactive-extracellular-compounds-produced-by-the-dinoflagellate-alexandrium-minutum-are-highly-detrimental-for-oysters
#6
J Castrec, P Soudant, L Payton, D Tran, P Miner, C Lambert, N Le Goïc, A Huvet, V Quillien, F Boullot, Z Amzil, H Hégaret, C Fabioux
Blooms of the dinoflagellate Alexandrium spp., known as producers of paralytic shellfish toxins (PSTs), are regularly detected on the French coastline. PSTs accumulate into harvested shellfish species, such as the Pacific oyster Crassostrea gigas, and can cause strong disorders to consumers at high doses. The impacts of Alexandrium minutum on C. gigas have often been attributed to its production of PSTs without testing separately the effects of the bioactive extracellular compounds (BECs) with allelopathic, hemolytic, cytotoxic or ichthyotoxic properties, which can also be produced by these algae...
March 29, 2018: Aquatic Toxicology
https://www.readbyqxmd.com/read/29625197/a-single-subconvulsant-dose-of-domoic-acid-at-mid-gestation-does-not-cause-temporal-lobe-epilepsy-in-mice
#7
Fanny Demars, Kristen Clark, Megan S Wyeth, Emily Abrams, Paul S Buckmaster
Harmful blooms of domoic acid (DA)-producing algae are a problem in oceans worldwide. DA is a potent glutamate receptor agonist that can cause status epilepticus and in survivors, temporal lobe epilepsy. In mice, one-time low-dose in utero exposure to DA was reported to cause hippocampal damage and epileptiform activity, leading to the hypothesis that unrecognized exposure to DA from contaminated seafood in pregnant women can damage the fetal hippocampus and initiate temporal lobe epileptogenesis. However, development of epilepsy (i...
April 3, 2018: Neurotoxicology
https://www.readbyqxmd.com/read/29614827/the-impact-of-warming-and-nutrients-on-algae-production-and-microcystins-in-seston-from-the-iconic-lake-lesser-prespa-greece
#8
Valentini Maliaka, Elisabeth J Faassen, Alfons J P Smolders, Miquel Lürling
Lake Lesser Prespa and its adjacent pond, Vromolimni in Greece, is a shallow freshwater system and a highly protected area hosting an exceptional biodiversity. The occurrence of microcystins (MCs) producing cyanobacterial blooms in these waters during recent years can be harmful to the wildlife. We tested the hypothesis that both cyanobacterial biomass and MCs are strongly influenced by nutrients (eutrophication) and warming (climate change). Lake and pond water was collected from two sites in each water body in 2013 and incubated at three temperatures (20 °C, 25 °C, 30 °C) with or without additional nutrients (nitrogen +N, phosphorus +P and both +N and +P)...
April 2, 2018: Toxins
https://www.readbyqxmd.com/read/29609171/nitrate-reduction-pathways-in-the-presence-of-excess-nitrogen-in-a-shallow-eutrophic-estuary
#9
Rebecca J Domangue, Behzad Mortazavi
The eutrophication of estuaries results from increasing anthropogenic nutrient inputs to coastal waters. Ecosystem recovery from eutrophication is partly dependent on the ability of a system to assimilate or remove nutrients, and denitrification and dissimilatory nitrate reduction to ammonium (DNRA) are important pathways for nitrogen (N) removal or retention. We measured rates of denitrification and DNRA over an annual cycle at two stations in Weeks Bay, AL, a shallow microtidal estuary receiving freshwater from two rivers with agricultural watersheds and high N inputs...
March 30, 2018: Environmental Pollution
https://www.readbyqxmd.com/read/29602499/thermal-acclimation-affects-growth-and-lipophilic-toxin-production-in-a-strain-of-cosmopolitan-harmful-alga-dinophysis-acuminata
#10
Leila Basti, Toshiyuki Suzuki, Hajime Uchida, Takashi Kamiyama, Satoshi Nagai
Species of the harmful algal bloom (HAB) genera Dinophysis are causative of one of the most widespread and expanding HAB events associated with the human intoxication, diarrheic shellfish poisoning (DSP). The effects of warming temperature on the physiology and toxinology of these mixotrophic species remain intractable due to their low biomass in nature and difficulties in establishing and maintaining them in culture. Hence, the present study investigated the influence of warming temperature, encompassing present and predicted climate scenarios, on growth and toxin production in a strain of the most cosmopolitan DSP-causative species, Dinophysis acuminata...
March 2018: Harmful Algae
https://www.readbyqxmd.com/read/29602497/comparison-of-loop-mediated-isothermal-amplification-with-hyperbranched-rolling-circle-amplification-as-a-simple-detection-method-for-heterosigma-akashiwo
#11
Chunyun Zhang, Yuanyuan Wang, Changlu Guo, Guofu Chen, Guangfeng Kan, Panpan Cai, Jin Zhou
The fish-killing alga Heterosigma akashiwo is a globally distributed, toxic, and bloom-forming raphidophyte that has caused great losses to the fishing industry in many coastal countries. Therefore, rapid and sensitive detection methods should be developed to present timely warning of harmful algal blooms. In this study, hyperbranched rolling circle amplification (HRCA) was established for the detection of H. akashiwo and compared with loop-mediated isothermal amplification (LAMP) in terms of specificity and sensitivity...
March 2018: Harmful Algae
https://www.readbyqxmd.com/read/29571112/composition-sources-and-bioavailability-of-nitrogen-in-a-longitudinal-gradient-from-freshwater-to-estuarine-waters
#12
Jariani Jani, Gurpal S Toor
Nitrogen (N) transport from land to water is a dominant contributor of N in estuarine waters leading to eutrophication, harmful algal blooms, and hypoxia. Our objectives were to (1) investigate the composition of inorganic and organic N forms, (2) distinguish the sources and biogeochemical mechanisms of nitrate-N (NO3 -N) transport using stable isotopes of NO3 - and Bayesian mixing model, and (3) determine the dissolved organic N (DON) bioavailability using bioassays in a longitudinal gradient from freshwater to estuarine ecosystem located in the Tampa Bay, Florida, United States...
March 2, 2018: Water Research
https://www.readbyqxmd.com/read/29555769/lhcsr1-dependent-fluorescence-quenching-is-mediated-by-excitation-energy-transfer-from-lhcii-to-photosystem-i-in-chlamydomonas-reinhardtii
#13
Kotaro Kosuge, Ryutaro Tokutsu, Eunchul Kim, Seiji Akimoto, Makio Yokono, Yoshifumi Ueno, Jun Minagawa
Photosynthetic organisms are frequently exposed to light intensities that surpass the photosynthetic electron transport capacity. Under these conditions, the excess absorbed energy can be transferred from excited chlorophyll in the triplet state (3Chl*) to molecular O2 , which leads to the production of harmful reactive oxygen species. To avoid this photooxidative stress, photosynthetic organisms must respond to excess light. In the green alga Chlamydomonas reinhardtii , the fastest response to high light is nonphotochemical quenching, a process that allows safe dissipation of the excess energy as heat...
March 19, 2018: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/29554636/the-role-of-marine-biotoxins-on-the-trophic-transfer-of-mn-and-zn-in-fish
#14
Simon Pouil, Rachel J Clausing, Marc Metian, Paco Bustamante, Marie-Yasmine Dechraoui Bottein
Essential nutrients are critical for physiological processes of organisms. In fish, they are obtained primarily from the diet, and their transfer and accumulation are known to be impacted by environmental variables such as water temperature, pH and salinity, as well as by diet composition and matrices. Yet, prey items consumed by fish may also contain toxic compounds such as marine toxins associated with harmful algae. These biotoxins have the potential to affect essential trace element assimilation in fish through chemical interactions such as the formation of trace element-toxin complexes or by affecting general fish physiology as in the modification of ion-specific transport pathways...
March 5, 2018: Aquatic Toxicology
https://www.readbyqxmd.com/read/29497219/design-and-operation-of-a-low-cost-and-compact-autonomous-buoy-system-for-use-in-coastal-aquaculture-and-water-quality-monitoring
#15
Wiebke Schmidt, David Raymond, David Parish, Ian G C Ashton, Peter I Miller, Carlos J A Campos, Jamie D Shutler
The need to ensure future food security and issues of varying estuarine water quality is driving the expansion of aquaculture into near-shore coastal waters. It is prudent to fully evaluate new or proposed aquaculture sites, prior to any substantial financial investment in infrastructure and staffing. Measurements of water temperature, salinity and dissolved oxygen can be used to gain insight into the physical, chemical and biological water quality conditions within a farm site, towards identifying its suitability for farming, both for the stock species of interest and for assessing the potential risk from harmful or toxic algae...
January 2018: Aquacultural Engineering
https://www.readbyqxmd.com/read/29476970/investigation-of-pharmaceutically-active-compounds-in-an-urban-receiving-water-occurrence-fate-and-environmental-risk-assessment
#16
Jianchao Liu, Xiaoxiang Dan, Guanghua Lu, Jie Shen, Donghai Wu, Zhenhua Yan
Pharmaceutically active compounds (PhACs) recently have been recognized to constitute a health risk for aquatic ecosystems. The major pathways of PhACs to enter the aquatic environment are excretion and discharge of effluents through sewage treatment plants (STPs). The occurrence, bioaccumulation and risk assessment of lipophilic PhACs, including erythromycin, ketoconazole, indomethacin, diclofenac, gemfibrozil, bezafibrate, propranolol, carbamazepine, sertraline and 17α-ethinylestradiol were investigated in a river that receives effluents from STP...
June 15, 2018: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/29475682/high-genetic-variability-of-alexandrium-catenella-directly-detected-in-environmental-samples-from-the-southern-austral-ecosystem-of-chile
#17
Fernando A Cruzat, Christian Muñoz, Rodrigo R González-Saldía, Agar Inostroza, Karl B Andree
Chilean waters are often affected by Alexandrium catenella, one of the leading organisms behind Harmful Algae Blooms (HABs). Genetic variability for this species are commonly carried out from cultured samples, approach that may not accurately quantify genetic variability of this organism in the water column. In this study, genetic variability of A. catenella was determined by sequencing the rDNA region, in water samples from the Canal Puyuhuapi (South Austral Ecosystem of Chile). A. catenella was detected in 8,8% of samples analysed...
February 2018: Marine Pollution Bulletin
https://www.readbyqxmd.com/read/29425153/seaweed-bioactive-compounds-against-pathogens-and-microalgae-potential-uses-on-pharmacology-and-harmful-algae-bloom-control
#18
REVIEW
Soukaina El Amrani Zerrifi, Fatima El Khalloufi, Brahim Oudra, Vitor Vasconcelos
Cyanobacteria are found globally due to their adaptation to various environments. The occurrence of cyanobacterial blooms is not a new phenomenon. The bloom-forming and toxin-producing species have been a persistent nuisance all over the world over the last decades. Evidence suggests that this trend might be attributed to a complex interplay of direct and indirect anthropogenic influences. To control cyanobacterial blooms, various strategies, including physical, chemical, and biological methods have been proposed...
February 9, 2018: Marine Drugs
https://www.readbyqxmd.com/read/29423695/assessment-of-atrazine-toxicity-to-the-estuarine-phytoplankter-dunaliella-tertiolecta-chlorophyta-under-varying-nutrient-conditions
#19
Stacie Flood, JoAnn Burkholder, Greg Cope
Anthropogenic inputs of chemical environmental contaminants are frequently associated with developing harmful algal blooms, but little is known about how estuarine phytoplankton assemblages respond to multiple, co-occurring chemical stressors in chronically disturbed habitats. The goals of this research were to establish a robust protocol for testing the effects of atrazine on estuarine phytoplankton, and then to use that protocol to compare the effects of atrazine exposure with and without nutrient enrichment on a cosmopolitan estuarine/marine alga, Dunaliella tertiolecta (Chlorophyta)...
February 8, 2018: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/29413380/realized-niche-analysis-of-phytoplankton-communities-involving-hab-phaeocystis-spp-as-a-case-study
#20
Stéphane Karasiewicz, Elsa Breton, Alain Lefebvre, Tania Hernández Fariñas, Sébastien Lefebvre
The link between harmful algal blooms, phytoplankton community dynamics and global environmental change is not well understood. To tackle this challenging question, a new method was used to reveal how phytoplankton communities responded to environmental change with the occurrence of an harmful algae, using the coastal waters of the eastern English Channel as a case study. The great interannual variability in the magnitude and intensity of Phaeocystis spp. blooms, along with diatoms, compared to the ongoing gradual decrease in anthropogenic nutrient concentration and rebalancing of nutrient ratios; suggests that other factors, such as competition for resources, may also play an important role...
February 2018: Harmful Algae
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