keyword
https://read.qxmd.com/read/38723751/biochemical-and-functional-characterization-of-the-p-a165t-missense-variant-of-mitochondrial-amidoxime-reducing-component-1
#1
JOURNAL ARTICLE
Wangfang Hou, Christian Watson, Ted Cecconie, Menaka N Bolaki, Jennifer J Brady, Quinn Lu, Gregory J Gatto, Tovah A Day
Recent genome-wide association studies have identified a missense variant p.A165T in mitochondrial amidoxime-reducing component 1 (mARC1) that is strongly associated with protection from all-cause cirrhosis and improved prognosis in nonalcoholic steatohepatitis (NASH). The precise mechanism of this protective effect is unknown. Substitution of alanine 165 with threonine is predicted to affect mARC1 protein stability and to have deleterious effects on its function. To investigate the mechanism, we have generated a knock-in mutant mARC1 A165T and a catalytically dead mutant C273A (as a control) in human hepatoma HepG2 cells, enabling characterization of protein subcellular distribution, stability, and biochemical functions of the mARC1 mutant protein expressed from its endogenous locus...
May 7, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38723387/whole-cell-bioconversion-for-producing-thymoquinone-by-engineered-saccharomyces-cerevisiae
#2
JOURNAL ARTICLE
Eunjee Kim, Minsun Kim, Min-Kyu Oh
Thymoquinone, extracted from the black seeds of Nigella sativa, is a natural substance with highly beneficial effects against various human diseases. In this study, we aimed to construct a Saccharomyces cerevisiae strain that, produce thymoquinone from thymol, a relatively inexpensive substrate. To achieve this, cytochrome P450 from Origanum vulgare was expressed in S. cerevisiae for the bioconversion of thymol to thymoquinone, with the co-expression of cytochrome P450 reductase (CPR) from Arabidopsis thaliana, ATR1...
April 26, 2024: Enzyme and Microbial Technology
https://read.qxmd.com/read/38723385/biosynthesis-of-silver-nanoparticles-using-burkholderia-contaminans-zcc-and-mechanistic-analysis-at-the-proteome-level
#3
JOURNAL ARTICLE
Le-Xing You, Hong-Lin Zhong, Si-Ru Chen, Yi-Nan Sun, Gao-Kai Wu, Meng-Xin Zhao, Shan-Shan Hu, Hend Alwathnani, Martin Herzberg, Su-Fang Qin, Christopher Rensing
The biogenic synthesis of silver nanoparticles (AgNPs) by microorganisms has been a subject of increasing attention. Despite extensive studies on this biosynthetic pathway, the mechanisms underlying the involvement of proteins and enzymes in AgNPs production have not been fully explored. Herein, we reported that Burkholderia contaminans ZCC was able to reduce Ag+ to AgNPs with a diameter of (10±5) nm inside the cell. Exposure of B. contaminans ZCC to Ag+ ions led to significant changes in the functional groups of cellular proteins, with approximately 5...
May 8, 2024: Ecotoxicology and Environmental Safety
https://read.qxmd.com/read/38719620/cyp116b5-sox-an-artificial-peroxygenase-for-drug-metabolites-production-and-bioremediation
#4
JOURNAL ARTICLE
Daniele Giuriato, Gianluca Catucci, Danilo Correddu, Giovanna Di Nardo, Gianfranco Gilardi
CYP116B5 is a class VII P450 in which the heme domain is linked to a FMN and 2Fe2S-binding reductase. Our laboratory has proved that the CYP116B5 heme domain (CYP116B5-hd) is capable of catalyzing the oxidation of substrates using H2 O2 . Recently, the Molecular Lego approach was applied to join the heme domain of CYP116B5 to sarcosine oxidase (SOX), which provides H2 O2 in-situ by the sarcosine oxidation. In this work, the chimeric self-sufficient fusion enzyme CYP116B5-SOX was heterologously expressed, purified, and characterized for its functionality by absorbance and fluorescence spectroscopy...
May 2024: Biotechnology Journal
https://read.qxmd.com/read/38692000/inhibitory-mechanism-of-cr-vi-on-sulfur-based-denitrification-bio-toxicity-bio-electron-characteristics-and-microbial-evolution
#5
JOURNAL ARTICLE
Qian Wang, Chenggong Zhang, Jinxin Song, Bibek Bamanu, Yingxin Zhao
Sulfur-based denitrification is a promising technology for efficient nitrogen removal in low-carbon wastewater, while it is easily affected by toxic substances. This study revealed the inhibitory mechanism of Cr(VI) on thiosulfate-based denitrification, including bio-toxicity and bio-electron characteristics response. The activity of nitrite reductase (NIR) was more sensitive to Cr(VI) than that of nitrate reductase (NAR), and NIR was inhibited by 21.32 % and 19.86 % under 5 and 10 mg/L Cr(VI), resulting in 10...
April 26, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38686648/genetic-polymorphisms-and-major-bleeding-risk-during-vitamin-k-antagonists-treatment-the-bleeds-case-cohort
#6
JOURNAL ARTICLE
Eleonora Camilleri, Mira Ghobreyal, Mettine H A Bos, Pieter H Reitsma, Felix J M Van Der Meer, Jesse J Swen, Suzanne C Cannegieter, Nienke van Rein
BACKGROUND: Major bleeding occurs annually in 1%-3% of patients on vitamin K antagonists (VKAs), despite close monitoring. Genetic variants in proteins involved in VKA response may affect this risk. AIM: To determine the association of genetic variants (cytochrome P450 enzymes 2C9 [CYP2C9] and 4F2 [CYP4F2], gamma-glutamyl carboxylase [GGCX]) with major bleeding in VKA users, separately and combined, including vitamin K epoxide reductase complex subunit-1 (VKORC1)...
April 30, 2024: Pharmacotherapy
https://read.qxmd.com/read/38684680/a-secondary-mechanism-of-action-for-triazole-antifungals-in-aspergillus-fumigatus-mediated-by-hmg1
#7
JOURNAL ARTICLE
Jeffrey M Rybak, Jinhong Xie, Adela Martin-Vicente, Xabier Guruceaga, Harrison I Thorn, Ashley V Nywening, Wenbo Ge, Ana C O Souza, Amol C Shetty, Carrie McCracken, Vincent M Bruno, Josie E Parker, Steven L Kelly, Hannah M Snell, Christina A Cuomo, P David Rogers, Jarrod R Fortwendel
Triazole antifungals function as ergosterol biosynthesis inhibitors and are frontline therapy for invasive fungal infections, such as invasive aspergillosis. The primary mechanism of action of triazoles is through the specific inhibition of a cytochrome P450 14-α-sterol demethylase enzyme, Cyp51A/B, resulting in depletion of cellular ergosterol. Here, we uncover a clinically relevant secondary mechanism of action for triazoles within the ergosterol biosynthesis pathway. We provide evidence that triazole-mediated inhibition of Cyp51A/B activity generates sterol intermediate perturbations that are likely decoded by the sterol sensing functions of HMG-CoA reductase and Insulin-Induced Gene orthologs as increased pathway activity...
April 29, 2024: Nature Communications
https://read.qxmd.com/read/38672458/the-impact-of-inorganic-systems-and-photoactive-metal-compounds-on-cytochrome-p450-enzymes-and-metabolism-from-induction-to-inhibition
#8
REVIEW
Dmytro Havrylyuk, David K Heidary, Edith C Glazer
While cytochrome P450 (CYP; P450) enzymes are commonly associated with the metabolism of organic xenobiotics and drugs or the biosynthesis of organic signaling molecules, they are also impacted by a variety of inorganic species. Metallic nanoparticles, clusters, ions, and complexes can alter CYP expression, modify enzyme interactions with reductase partners, and serve as direct inhibitors. This commonly overlooked topic is reviewed here, with an emphasis on understanding the structural and physiochemical basis for these interactions...
April 4, 2024: Biomolecules
https://read.qxmd.com/read/38667406/identification-of-candidate-genes-associated-with-type-ii-sex-pheromone-biosynthesis-in-the-tea-geometrid-ectropis-obliqua-lepidoptera-geometridae
#9
JOURNAL ARTICLE
Changxia Xu, Nanxia Fu, Xiaoming Cai, Zhaoqun Li, Lei Bian, Chunli Xiu, Zongmao Chen, Long Ma, Zongxiu Luo
Ectropis obliqua , a notorious tea pest, produces a Type-II sex pheromone blend for mate communication. This blend contains ( Z,Z,Z )-3,6,9-octadecatriene, ( Z,Z )-3,9- cis -6,7-epoxy-octadecadiene, and ( Z,Z )-3,9- cis -6,7-epoxy-nonadecadiene. To elucidate the genes related to the biosynthesis of these sex pheromone components, transcriptome sequencing of the female E. obliqua pheromone gland and the abdomen without pheromone gland was performed. Comparative RNAseq analyses identified 52 putative genes, including 7 fatty acyl-CoA elongases (ELOs), 9 fatty acyl-CoA reductases (FARs), 1 decarbonylase (DEC), 3 lipophorins (LIPs), and 32 cytochrome P450 enzymes (CYPs)...
April 15, 2024: Insects
https://read.qxmd.com/read/38666843/formoterol-acting-via-%C3%AE-2-adrenoreceptor-restores-mitochondrial-dysfunction-caused-by-parkinson-s-disease-related-uqcrc1-mutation-and-improves-mitochondrial-homeostasis-including-dynamic-and-transport
#10
JOURNAL ARTICLE
Jui-Chih Chang, Huei-Shin Chang, Yi-Chun Chao, Ching-Shan Huang, Chin-Hsien Lin, Zhong-Sheng Wu, Hui-Ju Chang, Chin-San Liu, Chieh-Sen Chuang
Formoterol, a β2-adrenergic receptor (β2AR) agonist, shows promise in various diseases, but its effectiveness in Parkinson's disease (PD) is debated, with unclear regulation of mitochondrial homeostasis. This study employed a cell model featuring mitochondrial ubiquinol-cytochrome c reductase core protein 1 (UQCRC1) variants associated with familial parkinsonism, demonstrating mitochondrial dysfunction and dynamic imbalance, exploring the therapeutic effects and underlying mechanisms of formoterol...
March 30, 2024: Biology
https://read.qxmd.com/read/38664873/mir-208a-3p-regulated-by-circuqcrc2-suppresses-ischemia-reperfusion-induced-acute-kidney-injury-by-inhibiting-celf2-mediated-tubular-epithelial-cell-apoptosis-inflammation-and-ferroptosis
#11
JOURNAL ARTICLE
Peng Huang, Lingzhang Meng, Jun Pang, Haiting Huang, Jing Ma, Linlin He, Xu Lin
BACKGROUND: Acute kidney injury (AKI) is a prevalent clinical syndrome with persistent kidney dysfunction. Renal ischemia/reperfusion (I/R) injury is a major cause of AKI. miR-208a-3p overexpression attenuated myocardial I/R injury. This study aims to investigate the role and mechanism of miR-208a-3p in I/R-induced AKI. METHODS: AKI models were established using hypoxia/reoxygenation (H/R)-exposed tubule epithelial cell HK-2 and I/R-induced mice. The function and mechanism of miR-208a-3p were investigated by gain-or loss-of-function methods using real-time PCR, CCK-8, flow cytometry, ELISA, western blot, hematoxylin-eosin staining, Tunel assay, detection of Fe2+, ROS, BUN and Creatinine, and luciferase reporter assay...
April 26, 2024: Shock
https://read.qxmd.com/read/38657445/binge-alcohol-induces-nrf2-related-antioxidant-response-in-the-skeletal-muscle-of-female-mice
#12
JOURNAL ARTICLE
Abigail L Tice, Jennifer L Steiner
BACKGROUND: Chronic alcohol enhances oxidative stress, but the temporal response of antioxidant genes in skeletal muscle following a binge drinking episode remains unknown. METHODS: Experiment 1: C57BL/6Hsd female mice received an IP injection of saline (CON; n = 39) or ethanol (ETOH; n = 39) (5 g/kg). Gastrocnemius muscles were collected from baseline (untreated; n = 3), CON (n = 3), and ETOH (n = 3) mice every 4 h for 48 h...
April 20, 2024: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/38657101/cytochrome-b5-diversity-in-green-lineages-preceded-the-evolution-of-syringyl-lignin-biosynthesis
#13
JOURNAL ARTICLE
Xianhai Zhao, Yunjun Zhao, Qing-Yin Zeng, Chang-Jun Liu
Lignin production marked a milestone in vascular plant evolution, and the emergence of syringyl (S)-lignin is lineage-specific. S-lignin biosynthesis in angiosperms, mediated by ferulate 5-hydroxylase (F5H, CYP84A1), has been considered a recent evolutionary event. F5H uniquely requires the cytochrome b5 protein CB5D as an obligatory redox partner for catalysis. However, it remains unclear how CB5D functionality originated and whether it co-evolved with F5H. We reveal here the ancient evolution of CB5D-type function supporting F5H-catalyzed S-lignin biosynthesis...
April 24, 2024: Plant Cell
https://read.qxmd.com/read/38653393/sophorin-mitigate-flutamide-induced-hepatotoxicity-in-wistar-rats
#14
JOURNAL ARTICLE
Rishi Sharma, Md Meraj Ansari, Manzar Alam, Mohammad Fareed, Nemat Ali, Anas Ahmad, Sarwat Sultana, Rehan Khan
Flutamide is frequently used in the management of prostate cancer, hirsutism, and acne. It is a non-steroidal anti-androgenic drug and causes hepatotoxicity. The current study's objective is to evaluate sophorin's hepatoprotective effectiveness against flutamide-induced hepatotoxicity in Wistar rats. Sophorin is a citrus flavonoid glycoside, also known as rutin, which is a low molecular weight polyphenolic compound with natural antioxidant properties and reported to have promising hepatoprotective efficacy...
April 21, 2024: Toxicon: Official Journal of the International Society on Toxinology
https://read.qxmd.com/read/38652737/hypoxia-responsive-hydrogen-bonded-organic-framework-mediated-protein-delivery-for-cancer-therapy
#15
JOURNAL ARTICLE
Xu He, Jian Wang, Xiao Liu, Qingyu Niu, Zhiqiang Li, Banglin Chen, Qingqing Xiong
The efficient delivery of therapeutic proteins to tumor sites is a promising cancer treatment modality. Hydrogen-bonded organic frameworks (HOFs) have been successfully used for the protective encapsulation of proteins; however, easy precipitation and lack of controlled release of existing HOFs limit their further application for protein delivery in vivo. In this study, a hypoxia-responsive HOF, self-assembled from azobenzenedicarboxylate/polyethylene glycol-conjugated azobenzenedicarboxylate and tetrakis(4-amidiniumphenyl)methane through charge-assisted hydrogen-bonding, is developed for systemic protein delivery to tumor cells...
April 23, 2024: Advanced Healthcare Materials
https://read.qxmd.com/read/38643877/differential-effects-of-oxytetracycline-on-detoxification-and-antioxidant-defense-in-the-hepatopancreas-and-intestine-of-chinese-mitten-crab-under-cadmium-stress
#16
JOURNAL ARTICLE
Lin Zeng, Yong-Hong Wang, Chun-Xiang Ai, Bin Zhang, Hui Zhang, Zi-Ming Liu, Min-Hui Yu, Bing Hu
This study aims to evaluate the effects of oxytetracycline (OTC) on detoxification and oxidative defense in the hepatopancreas and intestine of Chinese mitten crab (Eriocheir sinensis) under cadmium (Cd) stress. The crab was exposed to 0.6 μM Cd, 0.6 μM OTC, and 0.6 μM Cd plus 0.6 μM OTC for 42 days. Our results showed that in the intestine, OTC alone enhanced protein carboxylation (PC) and malondialdehyde (MDA) contents, which was associated with the increased OTC accumulation...
April 19, 2024: Science of the Total Environment
https://read.qxmd.com/read/38638027/msrb2-ameliorates-h-2-o-2-induced-chondrocyte-oxidative-stress-and-suppresses-apoptosis-in-osteoarthritis
#17
JOURNAL ARTICLE
Keke Huang, Wenhan Fu, Anquan Wang, Gongwen Du, Hao Tang, Li Yin, Zongsheng Yin, Weilu Gao
BACKGROUND: Chondrocyte oxidative stress and apoptosis are critical factors contributing to the pathogenesis of osteoarthritis (OA). Methionine sulfoxide reductase B2 (MSRB2) is a mitochondrial protein that protects cells from oxidative stress and is involved in apoptosis. This study aimed to investigated the expression of MSRB2 in articular cartilage tissues and elucidated its effect on H2 O2 -stimulated chondrocytes. METHODS: Human chondrocytes were cultured in Dulbecco's modified Eagle's medium (DMEM)/F12...
April 18, 2024: Immunological Investigations
https://read.qxmd.com/read/38632227/mmca-is-an-electron-conduit-that-facilitates-both-intracellular-and-extracellular-electron-transport-in-methanosarcina-acetivorans
#18
JOURNAL ARTICLE
Dinesh Gupta, Keying Chen, Sean J Elliott, Dipti D Nayak
Methanogens are a diverse group of Archaea that obligately couple energy conservation to the production of methane. Some methanogens encode alternate pathways for energy conservation, like anaerobic respiration, but the biochemical details of this process are unknown. We show that a multiheme c-type cytochrome called MmcA from Methanosarcina acetivorans is important for intracellular electron transport during methanogenesis and can also reduce extracellular electron acceptors like soluble Fe3+ and anthraquinone-2,6-disulfonate...
April 17, 2024: Nature Communications
https://read.qxmd.com/read/38631103/recent-mechanistic-developments-for-cytochrome-c-nitrite-reductase-the-key-enzyme-in-the-dissimilatory-nitrate-reduction-to-ammonium-pathway
#19
JOURNAL ARTICLE
Krystina Hird, Julius O Campeciño, Nicolai Lehnert, Eric L Hegg
Cytochrome c nitrite reductase, NrfA, is a soluble, periplasmic pentaheme cytochrome responsible for the reduction of nitrite to ammonium in the Dissimilatory Nitrate Reduction to Ammonium (DNRA) pathway, a vital reaction in the global nitrogen cycle. NrfA catalyzes this six-electron and eight-proton reduction of nitrite at a single active site with the help of its quinol oxidase partners. In this review, we summarize the latest progress in elucidating the reaction mechanism of ammonia production, including new findings about the active site architecture of NrfA, as well as recent results that elucidate electron transfer and storage in the pentaheme scaffold of this enzyme...
March 24, 2024: Journal of Inorganic Biochemistry
https://read.qxmd.com/read/38598868/target-site-and-non-target-site-resistance-mechanisms-confer-mesosulfuron-methyl-resistance-in-alopecurus-aequalis
#20
JOURNAL ARTICLE
You Zhan, Haozhe Liu, Ziheng Cao, Jiale Qi, Lianyang Bai, Lang Pan
BACKGROUND: Shortawn foxtail (Alopecurus aequalis Sobol.) is a noxious weed in China. The resistance of A. aequalis developed rapidly due to the long-term application of acetolactate synthase (ALS)-inhibiting herbicides. Here, a suspected mesosulfuron-methyl-resistant A. aequalis population, Aa-R, was collected from a wheat field in China. RESULTS: A dose‒response test showed that the Aa-R population has evolved a high level of resistance to mesosulfuron-methyl, and its growth was suppressed by imazamox, pyroxsulam and bispyribac-sodium...
April 4, 2024: Plant Physiology and Biochemistry: PPB
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