keyword
https://read.qxmd.com/read/38718468/ap-1-dependent-fibrosis-exploring-its-potential-role-in-the-pathogenesis-of-placental-transmogrification-of-the-lung-ptl-via-tissue-level-transcriptome-analysis
#1
JOURNAL ARTICLE
Beren Karaosmanoglu, Gozde Imren, Meral Uner, Diclehan Orhan, Safak Gucer, Ozlem Boybeyi Turer, Pelin Ozlem Simsek Kiper, Eda Utine, Ekim Z Taskiran, Feridun Cahit Tanyel, Tutku Soyer
Placental transmogrification of the lung (PTL) is a rare pulmonary condition characterized by the presence of immature placental villous structures. The etiology and molecular mechanisms underlying this disease remain largely unknown. This functional study aimed to identify the molecular signatures in the pathogenesis of PTL via comprehensive transcriptome analysis. Comparative transcriptomic assessment of PTL tissue and stromal cells showed differential expression of 257 genes in PTL tissue and 189 genes in stromal cells...
April 26, 2024: Pathology, Research and Practice
https://read.qxmd.com/read/38630537/set7-methyltransferase-and-phenotypic-switch-in-diabetic-glomerular-endothelial-cells
#2
JOURNAL ARTICLE
Scott Maxwell, Jun Okabe, Harikrishnan Kaipananickal, Hanah Rodriguez, Ishant Khurana, Keith Al-Hasani, Bryna S M Chow, Eleni Pitsillou, Tom C Karagiannis, Karin Jandeleit-Dahm, Ronald C W Ma, Yu Huang, Juliana C N Chan, Mark E Cooper, Assam El-Osta
BACKGROUND: Hyperglycaemia influences the development of glomerular endothelial cell damage and nowhere is this more evident than in the progression of diabetic kidney disease (DKD). While the Set7 lysine methyltransferase is a known hyperglycaemic sensor, its role in endothelial cell function in the context of DKD remains poorly understood. METHODS: Single-cell transcriptomics was used to investigate Set7 regulation in a mouse model of DKD, followed by validation of findings using pharmacological and shRNA inhibition of Set7...
April 17, 2024: Journal of the American Society of Nephrology: JASN
https://read.qxmd.com/read/38618724/gastric-cancer-immune-subtypes-and-prognostic-modeling-insights-from-aging-related-gene-analysis
#3
JOURNAL ARTICLE
Jian Shen, Minzhe Li
Gastric cancer (GC) is highly heterogeneous and influenced by aging-related factors. This study aimed to improve individualized prognostic assessment of GC by identifying aging-related genes and subtypes. Immune scores of GC samples from GEO and TCGA databases were calculated using ESTIMATE and scored as high immune (IS_high) and low immune (IS_low). ssGSEA was used to analyze immune cell infiltration. Univariate Cox regression was employed to identify prognosis-related genes. LASSO regression analysis was used to construct a prognostic model...
2024: Critical Reviews in Immunology
https://read.qxmd.com/read/38589872/sex-based-differences-in-growth-related-igf1-signaling-in-response-to-papp-a2-deficiency-comparative-effects-of-rhgh-rhigf1-and-rhpapp-a2-treatments
#4
JOURNAL ARTICLE
María Del Mar Fernández-Arjona, Juan Antonio Navarro, Antonio Jesús López-Gambero, Marialuisa de Ceglia, Miguel Rodríguez, Leticia Rubio, Fernando Rodríguez de Fonseca, Vicente Barrios, Julie A Chowen, Jesús Argente, Patricia Rivera, Juan Suárez
BACKGROUND: Children with pregnancy-associated plasma protein-A2 (PAPP-A2) mutations resulting in low levels of bioactive insulin-like growth factor-1 (IGF1) and progressive postnatal growth retardation have improved growth velocity and height following recombinant human (rh)IGF1 treatment. The present study aimed to evaluate whether Pappa2 deficiency and pharmacological manipulation of GH/IGF1 system are associated with sex-specific differences in growth-related signaling pathways. METHODS: Plasma, hypothalamus, pituitary gland and liver of Pappa2ko/ko mice of both sexes, showing reduced skeletal growth, and liver of these mice treated with rhGH, rhIGF1 and rhPAPP-A2 from postnatal day (PND) 5 to PND35 were analyzed...
April 8, 2024: Biology of Sex Differences
https://read.qxmd.com/read/38586912/the-insulin-like-growth-factor-binding-protein-microfibrillar-associated-protein-sterol-regulatory-element-binding-protein-axis-regulates-fibroblast-myofibroblast-transition-and-cardiac-fibrosis
#5
JOURNAL ARTICLE
Qianwen Zhao, Tinghui Shao, Shan Huang, Junjie Zhang, Genjie Zong, Lili Zhuo, Yong Xu, Wenxuan Hong
BACKGROUND AND PURPOSE: Excessive fibrogenesis is associated with adverse cardiac remodelling and heart failure. The myofibroblast, primarily derived from resident fibroblast, is the effector cell type in cardiac fibrosis. Megakaryocytic leukaemia 1 (MKL1) is considered the master regulator of fibroblast-myofibroblast transition (FMyT). The underlying transcriptional mechanism is not completely understood. Our goal was to identify novel transcriptional targets of MKL1 that might regulate FMyT and contribute to cardiac fibrosis...
April 8, 2024: British Journal of Pharmacology
https://read.qxmd.com/read/38565090/igfbp5-promotes-neuronal-apoptosis-in-a-6-ohda-toxicant-model-of-parkinson-s-disease-by-inhibiting-the-sonic-hedgehog-signalling-pathway
#6
JOURNAL ARTICLE
Shenglong Guo, Qi Lei, Qian Yang, Ruili Chen
INTRODUCTION: Parkinson's disease (PD) is a most common neurodegenerative disease worldwide. Studies have shown that insulin-like growth factor-binding protein 5 (IGFBP5) may contribute to methamphetamine-induced neurotoxicity and neuronal apoptosis in PC-12 cells and rat striatum. Here, we studied the expression and role of IGFBP5 in the 6-OHDA-toxicant model of PD. METHODS: PC-12 and SH-SY5Y cells were exposed to 50 μM 6-OHDA for 24 h. qRT-PCR, western blotting, CCK-8 assay, EdU staining, annexin V staining, and immunofluorescence were performed to study the effects of IGFBP5 specific siRNAs...
April 2, 2024: Medical Principles and Practice: International Journal of the Kuwait University, Health Science Centre
https://read.qxmd.com/read/38475964/identification-of-gravity-responsive-serum-proteins-in-spaceflight-mice-using-a-quantitative-proteomic-approach-with-data-independent-acquisition-mass-spectrometry
#7
JOURNAL ARTICLE
Yayoi Kimura, Yusuke Nakai, Yoko Ino, Tomoko Akiyama, Kayano Moriyama, Takashi Ohira, Tomoyuki Saito, Yutaka Inaba, Ken Kumagai, Akihide Ryo, Hisashi Hirano
Physical inactivity associated with gravity unloading, such as microgravity during spaceflight and hindlimb unloading (HU), can cause various physiological changes. In this study, we attempted to identify serum proteins whose levels fluctuated in response to gravity unloading. First, we quantitatively assessed changes in the serum proteome profiles of spaceflight mice using mass spectrometry with data-independent acquisition. The serum levels of several proteins involved in the responses to estrogen and glucocorticoid, blood vessel maturation, osteoblast differentiation, and ossification were changed by microgravity exposure...
March 12, 2024: Proteomics
https://read.qxmd.com/read/38421500/high-intensity-interval-training-enhances-mrna-expression-of-igf1ea-in-rat-achilles-tendon
#8
JOURNAL ARTICLE
Yoshifumi Tsuchiya, Hisashi Takakura, Seita Osawa, Tetsuya Izawa
High-intensity interval training (HIIT) reportedly enhances the functional properties of the musculoskeletal system. However, the effects of HIIT on tendons remain unclear. Sixteen male rats were randomly assigned to the control (Con) or HIIT group (n = 8 in each group). Rats in the HIIT group executed the HIIT program consisting of 2.5 min treadmill running and 4.5 min rests between the bouts, 5 days per week for 9 weeks. Running speed, number of sets, and inclination were incrementally increased during the training period...
February 29, 2024: Molecular Biology Reports
https://read.qxmd.com/read/38420807/single-cell-transcriptome-analysis-identified-core-genes-and-transcription-factors-in-mesenchymal-cell-differentiation-during-liver-cirrhosis
#9
JOURNAL ARTICLE
Xue Dai, Hui-Lin Zheng, Ya-Xin Ma, Yun-Yan Wang, Mai-Qiu Wang, Hai-Ying Cai, Zhen-Hua Hu, Jian Wan, Lei Zhang
BACKGROUND: Mesenchymal cells, including hepatic stellate cells (HSCs), fibroblasts (FBs), myofibroblasts (MFBs), and vascular smooth muscle cells (VSMCs), are the main cells that affect liver fibrosis and play crucial roles in maintaining tissue homeostasis. The dynamic evolution of mesenchymal cells is very important but remains to be explored for researching the reversible mechanism of hepatic fibrosis and its evolution mechanism of hepatic fibrosis to cirrhosis. METHODS: Here, we analysed the transcriptomes of more than 50,000 human single cells from three cirrhotic and three healthy liver tissue samples and the mouse hepatic mesenchymal cells of two healthy and two fibrotic livers to reconstruct the evolutionary trajectory of hepatic mesenchymal cells from a healthy to a cirrhotic state, and a subsequent integrative analysis of bulk RNA sequencing (RNA-seq) data of HSCs from quiescent to active (using transforming growth factor β1 (TGF-β1) to stimulate LX-2) to inactive states...
February 6, 2024: Frontiers in Bioscience (Landmark Edition)
https://read.qxmd.com/read/38351010/igfbp5-is-released-by-senescent-cells-and-is-internalized-by-healthy-cells-promoting-their-senescence-through-interaction-with-retinoic-receptors
#10
JOURNAL ARTICLE
Nicola Alessio, Domenico Aprile, Gianfranco Peluso, Valeria Mazzone, Deanira Patrone, Giovanni Di Bernardo, Umberto Galderisi
Cells that are exposed to harmful genetic damage, either from internal or external sources, may undergo senescence if they are unable to repair their DNA. Senescence, characterized by a state of irreversible growth arrest, can spread to neighboring cells through a process known as the senescence-associated secretory phenotype (SASP). This phenomenon contributes to both aging and the development of cancer. The SASP comprises a variety of factors that regulate numerous functions, including the induction of secondary senescence, modulation of immune system activity, remodeling of the extracellular matrix, alteration of tissue structure, and promotion of cancer progression...
February 13, 2024: Cell Communication and Signaling: CCS
https://read.qxmd.com/read/38341328/identification-and-immunoassay-of-prognostic-genes-associated-with-the-complement-system-in-acute-myeloid-leukemia
#11
JOURNAL ARTICLE
Chen Liu, Lin Liu
Studies have associated the development of pulmonary leukemia with the activation of the complement system. However, the roles and mechanisms of complement system-related genes (CSRGs) in acute myeloid leukemia (AML) have not been investigated extensively. This study used The Cancer Genome Atlas (TCGA)-AML and GSE37642 datasets. Differentially expressed CSRGs (CSRDEGs) were identified by overlapping genes differentially expressed between the high and low CSRG score groups and key module genes identified in a weighted gene co-expression network analysis...
February 9, 2024: Journal of the Formosan Medical Association
https://read.qxmd.com/read/38339384/identification-of-hypoxia-prognostic-signature-in-glioblastoma-multiforme-based-on-bulk-and-single-cell-rna-seq
#12
JOURNAL ARTICLE
Yaman B Ahmed, Obada E Ababneh, Anas A Al-Khalili, Abdullah Serhan, Zaid Hatamleh, Owais Ghammaz, Mohammad Alkhaldi, Safwan Alomari
Glioblastoma (GBM) represents a profoundly aggressive and heterogeneous brain neoplasm linked to a bleak prognosis. Hypoxia, a common feature in GBM, has been linked to tumor progression and therapy resistance. In this study, we aimed to identify hypoxia-related differentially expressed genes (DEGs) and construct a prognostic signature for GBM patients using multi-omics analysis. Patient cohorts were collected from publicly available databases, including the Gene Expression Omnibus (GEO), the Chinese Glioma Genome Atlas (CGGA), and The Cancer Genome Atlas-Glioblastoma Multiforme (TCGA-GBM), to facilitate a comprehensive analysis...
February 1, 2024: Cancers
https://read.qxmd.com/read/38318192/transcriptional-profile-of-human-thymus-reveals-igfbp5-is-correlated-with-age-related-thymic-involution
#13
JOURNAL ARTICLE
Xiaojing Yang, Xichan Chen, Wei Wang, Siming Qu, Binbin Lai, Ji Zhang, Jian Chen, Chao Han, Yi Tian, Yingbin Xiao, Weiwu Gao, Yuzhang Wu
Thymus is the main immune organ which is responsible for the production of self-tolerant and functional T cells, but it shrinks rapidly with age after birth. Although studies have researched thymus development and involution in mouse, the critical regulators that arise with age in human thymus remain unclear. We collected public human single-cell transcriptomic sequencing (scRNA-seq) datasets containing 350,678 cells from 36 samples, integrated them as a cell atlas of human thymus. Clinical samples were collected and experiments were performed for validation...
2024: Frontiers in Immunology
https://read.qxmd.com/read/38310360/chronic-arsenic-exposure-affects-stromal-cells-and-signaling-in-the-small-intestine-in-a-sex-specific-manner
#14
JOURNAL ARTICLE
Scott W Ventrello, Nicholas R McMurry, Nicholas M Edwards, Lisa J Bain
Arsenic is a toxicant that is ingested through drinking water and food, exposing nearly 140 million people to levels above the 10 ppb guideline concentration. Studies have shown that arsenic affects intestinal stem cells (ISCs), but the mechanisms by which arsenic alters formation of adult cells in the small intestine is not well understood. Signals derived from intestinal stromal cells initiate and maintain differentiation. The goal of this study is to evaluate arsenic's effect on intestinal stromal cells, including PdgfrαLo trophocytes, located proximal to the ISCs, and PdgfrαHi telocytes, located proximal to the transit amplifying region and up the villi...
February 4, 2024: Toxicological Sciences: An Official Journal of the Society of Toxicology
https://read.qxmd.com/read/38309679/crosstalk-between-endothelial-cells-with-a-non-canonical-endomt-phenotype-and-cardiomyocytes-fibroblasts-via-igfbp5-aggravates-tac-induced-cardiac-dysfunction
#15
JOURNAL ARTICLE
Yue Li, Shi-Hao Ni, Xin Liu, Shu-Ning Sun, Gui-Chen Ling, Jian-Ping Deng, Xiao-Lu Ou-Yang, Yu-Sheng Huang, Huan Li, Zi-Xin Chen, Xiu-Fang Huang, Shao-Xiang Xian, Zhong-Qi Yang, Ling-Jun Wang, Hong-Yan Wu, Lu Lu
Heart failure (HF) is a complex chronic condition characterized by structural and functional impairments. The differentiation of endothelial cells into myofibroblasts (EndoMT) in response to cardiac fibrosis is controversial, and the relative contribution of endothelial plasticity remains to be explored. Single-cell RNA sequencing was used to identify endothelial cells undergoing fibrotic differentiation within 2 weeks of transverse aortic constriction (TAC). This subset of endothelial cells transiently expressed fibrotic genes but had low expression of alpha-smooth muscle actin, indicating a non-canonical EndoMT, which we named a transient fibrotic-like phenotype (EndoFP)...
February 1, 2024: European Journal of Pharmacology
https://read.qxmd.com/read/38189472/potential-diagnostic-markers-and-therapeutic-targets-for-periodontitis-and-alzheimer-s-disease-based-on-bioinformatics-analysis
#16
JOURNAL ARTICLE
Kai Yang, Zhaoqi Zhang, Qingyuan Zhang, Hongyu Zhang, Xiaoju Liu, Zhicheng Jia, Zhenhao Ying, Wei Liu
BACKGROUND AND OBJECTIVE: As a chronic inflammatory disease, periodontitis threatens oral health and is a risk factor for Alzheimer's disease (AD). There is growing evidence that these two diseases are closely related. However, current research is still incomplete in understanding the common genes and common mechanisms between periodontitis and AD. In this study, we aimed to identify common genes in periodontitis and AD and analyze the relationship between crucial genes and immune cells to provide new therapeutic targets for clinical treatment...
January 8, 2024: Journal of Periodontal Research
https://read.qxmd.com/read/38164271/igfbp5-as-a-prognostic-indicator-promotes-tumor-progression-and-correlates-with-immune-microenvironment-in-glioma
#17
JOURNAL ARTICLE
Jiediao Lin, Guowei Huang, Qianru Zeng, Rendong Zhang, Yun Lin, Yaochen Li, Baohua Huang, Hongchao Pan
Background: Insulin-like growth factor binding protein 5 (IGFBP5) is highly expressed in multiple human cancers, including glioma. Despite this, it remains unclear what role it plays in glioma. The aim of the present study was to analyze whether IGFBP5 could be used as a predictor of prognosis and immune infiltration in glioma. Methods: Glioma patients' clinical information was collected from the Cancer Genome Atlas (TCGA), the Chinese Glioma Genome Atlas (CGGA), Rembrandt, and Gravendeel databases. The diagnostic and prognostic roles of IGFBP5 were assessed by the Kaplan-Meier survival curves, diagnostic receiver operating characteristic (ROC) curves, nomogram model, Cox regression analysis and Enrichment analysis by R software...
2024: Journal of Cancer
https://read.qxmd.com/read/38159363/secreted-insulin-like-growth-factor-binding-protein-5-functions-as-a-tumor-suppressor-and-chemosensitizer-through-inhibiting-insulin-like-growth-factor-1-receptor-protein-kinase-b-pathway-in-acute-myeloid-leukemia
#18
JOURNAL ARTICLE
Beiying Zhang, Xiaoling Deng, Ruolan You, Jingru Liu, Diyu Hou, Xiaoting Wang, Shucheng Chen, Dongliang Li, Qiang Fu, Jingdong Zhang, Huifang Huang, Xiaoli Chen
BACKGROUND: In addition to being secreted into the intercellular spaces by exocytosis, insulin-like growth factor binding protein 5 (IGFBP5) may also remain in the cytosol or be transported to the nucleus. Depending on the different cellular context and subcellular distribution, IGFBP5 can act as a tumor suppressor or promoter through insulin-like growth factor -dependent or -independent mechanisms. Yet, little is known about the impacts of IGFBP5 on acute myeloid leukemia (AML) and its underlying mechanism...
December 29, 2023: Neoplasia: An International Journal for Oncology Research
https://read.qxmd.com/read/38092723/the-chromatin-remodeling-protein-brg1-regulates-hsc-myofibroblast-differentiation-and-liver-fibrosis
#19
JOURNAL ARTICLE
Yuwen Zhu, Aoqi Kang, Yameng Kuai, Yan Guo, Xiulian Miao, Li Zhu, Ming Kong, Nan Li
Excessive fibrogenic response in the liver disrupts normal hepatic anatomy and function heralding such end-stage liver diseases as hepatocellular carcinoma and cirrhosis. Myofibroblasts, derived primarily from hepatic stellate cells (HSCs), are the effector of liver fibrosis. In the present study we investigated the mechanism by which Brahma-related gene 1 (BRG1, encoded by Smarca4) regulates HSC-myofibroblast transition and the implication in intervention against liver fibrosis. We report that BRG1 expression was elevated during HSC maturation in cell culture, in animal models, and in human cirrhotic liver biopsy specimens...
December 14, 2023: Cell Death & Disease
https://read.qxmd.com/read/38069312/transcriptome-analysis-of-mrna-and-lncrna-related-to-muscle-growth-and-development-in-gannan-yak-and-jeryak
#20
JOURNAL ARTICLE
Yali Wei, Dashan Guo, Yanbin Bai, Zhanxin Liu, Jingsheng Li, Zongchang Chen, Bingang Shi, Zhidong Zhao, Jiang Hu, Xiangmin Han, Jiqing Wang, Xiu Liu, Shaobin Li, Fangfang Zhao
The production performance of Jeryak, resulting from the F1 generation of the cross between Gannan yak and Jersey cattle, exhibits a significantly superior outcome compared with that of Gannan yak. Therefore, we used an RNA-seq approach to identify differentially expressed mRNAs (DEMs) and differentially expressed lncRNAs (DELs) influencing muscle growth and development in Gannan yaks and Jeryaks. A total of 304 differentially expressed lncRNAs and 1819 differentially expressed mRNAs were identified based on the screening criteria of |log 2 FC| > 1 and FDR < 0...
November 30, 2023: International Journal of Molecular Sciences
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