keyword
https://read.qxmd.com/read/38643172/tad-boundary-deletion-causes-pitx2-related-cardiac-electrical-and-structural-defects
#1
JOURNAL ARTICLE
Manon Baudic, Hiroshige Murata, Fernanda M Bosada, Uirá Souto Melo, Takanori Aizawa, Pierre Lindenbaum, Lieve E van der Maarel, Amaury Guedon, Estelle Baron, Enora Fremy, Adrien Foucal, Taisuke Ishikawa, Hiroya Ushinohama, Sean J Jurgens, Seung Hoan Choi, Florence Kyndt, Solena Le Scouarnec, Vincent Wakker, Aurélie Thollet, Annabelle Rajalu, Tadashi Takaki, Seiko Ohno, Wataru Shimizu, Minoru Horie, Takeshi Kimura, Patrick T Ellinor, Florence Petit, Yves Dulac, Paul Bru, Anne Boland, Jean-François Deleuze, Richard Redon, Hervé Le Marec, Thierry Le Tourneau, Jean-Baptiste Gourraud, Yoshinori Yoshida, Naomasa Makita, Claude Vieyres, Takeru Makiyama, Stephan Mundlos, Vincent M Christoffels, Vincent Probst, Jean-Jacques Schott, Julien Barc
While 3D chromatin organization in topologically associating domains (TADs) and loops mediating regulatory element-promoter interactions is crucial for tissue-specific gene regulation, the extent of their involvement in human Mendelian disease is largely unknown. Here, we identify 7 families presenting a new cardiac entity associated with a heterozygous deletion of 2 CTCF binding sites on 4q25, inducing TAD fusion and chromatin conformation remodeling. The CTCF binding sites are located in a gene desert at 1 Mb from the Paired-like homeodomain transcription factor 2 gene (PITX2)...
April 20, 2024: Nature Communications
https://read.qxmd.com/read/38643169/genesis-cgdyn-large-scale-coarse-grained-md-simulation-with-dynamic-load-balancing-for-heterogeneous-biomolecular-systems
#2
JOURNAL ARTICLE
Jaewoon Jung, Cheng Tan, Yuji Sugita
Residue-level coarse-grained (CG) molecular dynamics (MD) simulation is widely used to investigate slow biological processes that involve multiple proteins, nucleic acids, and their complexes. Biomolecules in a large simulation system are distributed non-uniformly, limiting computational efficiency with conventional methods. Here, we develop a hierarchical domain decomposition scheme with dynamic load balancing for heterogeneous biomolecular systems to keep computational efficiency even after drastic changes in particle distribution...
April 20, 2024: Nature Communications
https://read.qxmd.com/read/38641731/differences-in-diacylglycerol-acyltransferases-expression-patterns-and-regulation-cause-distinct-hepatic-triglyceride-deposition-in-fish
#3
JOURNAL ARTICLE
Xiaojun Xiang, Renlei Ji, Shangzhe Han, Xiang Xu, Si Zhu, Yongnan Li, Jianlong Du, Kangsen Mai, Qinghui Ai
Triglyceride (TAG) deposition in the liver is associated with metabolic disorders. In lower vertebrate, the propensity to accumulate hepatic TAG varies widely among fish species. Diacylglycerol acyltransferases (DGAT1 and DGAT2) are major enzymes for TAG synthesis. Here we show that large yellow croaker (Larimichthys crocea) has significantly higher hepatic TAG level than that in rainbow trout (Oncorhynchus mykiss) fed with same diet. Hepatic expression of DGATs genes in croaker is markedly higher compared with trout under physiological condition...
April 19, 2024: Communications Biology
https://read.qxmd.com/read/38639894/correlation-between-autistic-traits-and-brain-functional-connectivity-in-preschoolers-with-autism-spectrum-disorder-a-resting-state-meg-study
#4
JOURNAL ARTICLE
Matilde Taddei, Pablo Cuesta, Silvia Annunziata, Sara Bulgheroni, Silvia Esposito, Elisa Visani, Alice Granvillano, Sara Dotta, Davide Sebastiano Rossi, Ferruccio Panzica, Silvana Franceschetti, Giulia Varotto, Daria Riva
BACKGROUND: Neurophysiological studies recognized that Autism Spectrum Disorder (ASD) is associated with altered patterns of over- and under-connectivity. However, little is known about network organization in children with ASD in the early phases of development and its correlation with the severity of core autistic features. METHODS: The present study aimed at investigating the association between brain connectivity derived from MEG signals and severity of ASD traits measured with different diagnostic clinical scales, in a sample of 16 children with ASD aged 2 to 6 years...
April 19, 2024: Neurological Sciences
https://read.qxmd.com/read/38639090/implementing-telestroke-in-the-inpatient-setting-identifying-factors-for-success
#5
JOURNAL ARTICLE
Deborah L Pestka, Samuel Boes, Solmaz Ramezani, Maya Peters, Michael G Usher, Joseph S Koopmeiners, Timothy J Beebe, Genevieve B Melton, Christopher D Streib
BACKGROUND: Inpatient telestroke programs have emerged as a solution to provide timely stroke care in underserved areas, but their successful implementation and factors influencing their effectiveness remain underexplored. This study aimed to qualitatively evaluate the perspectives of inpatient clinicians located at spoke hospitals participating in a newly established inpatient telestroke program to identify implementation barriers and facilitators. METHODS: This was a formative evaluation relying on semistructured qualitative interviews with 16 inpatient providers (physicians and nurse practitioners) at 5 spoke sites of a hub-and-spoke inpatient telestroke program...
April 19, 2024: Stroke; a Journal of Cerebral Circulation
https://read.qxmd.com/read/38638941/breaking-academic-silos-pedagogical-recommendations-for-equitable-obesity-prevention-training-and-research-during-an-age-of-nutrition-polarization
#6
JOURNAL ARTICLE
Salima F Taylor, Danielle M Krobath, Adolfo G Cuevas, Erin Hennessy, Susan B Roberts
INTRODUCTION: Obesity is a preventable chronic condition and a risk factor for poor health and early mortality. Weight stigma and weight-neutral medicine are popular topics in social media that are often at odds with current medical guidelines on obesity treatment and prevention. This conflict may erode the public's trust in science, impede research progress on preventing obesity in marginalized groups, and uphold the ongoing and historical lack of diversity among nutrition trainees. METHODS: The authors conducted a series of student-led dialogue sessions with nutrition graduate students in Boston, Massachusetts, from March to May 2023 to understand perceptions of obesity research, health equity, and racism and discrimination...
June 2024: AJPM Focus
https://read.qxmd.com/read/38637553/perceptography-unveils-the-causal-contribution-of-inferior-temporal-cortex-to-visual-perception
#7
JOURNAL ARTICLE
Elia Shahbazi, Timothy Ma, Martin Pernuš, Walter Scheirer, Arash Afraz
Neurons in the inferotemporal (IT) cortex respond selectively to complex visual features, implying their role in object perception. However, perception is subjective and cannot be read out from neural responses; thus, bridging the causal gap between neural activity and perception demands independent characterization of perception. Historically, though, the complexity of the perceptual alterations induced by artificial stimulation of IT cortex has rendered them impossible to quantify. To address this old problem, we tasked male macaque monkeys to detect and report optical impulses delivered to their IT cortex...
April 18, 2024: Nature Communications
https://read.qxmd.com/read/38637545/local-environment-in-biomolecular-condensates-modulates-enzymatic-activity-across-length-scales
#8
JOURNAL ARTICLE
Marcos Gil-Garcia, Ana I Benítez-Mateos, Marcell Papp, Florence Stoffel, Chiara Morelli, Karl Normak, Katarzyna Makasewicz, Lenka Faltova, Francesca Paradisi, Paolo Arosio
The mechanisms that underlie the regulation of enzymatic reactions by biomolecular condensates and how they scale with compartment size remain poorly understood. Here we use intrinsically disordered domains as building blocks to generate programmable enzymatic condensates of NADH-oxidase (NOX) with different sizes spanning from nanometers to microns. These disordered domains, derived from three distinct RNA-binding proteins, each possessing different net charge, result in the formation of condensates characterized by a comparable high local concentration of the enzyme yet within distinct environments...
April 18, 2024: Nature Communications
https://read.qxmd.com/read/38631896/environmental-pollutants-exposure-derived-extracellular-vesicles-crucial-players-in-respiratory-disorders
#9
REVIEW
Haoran Shen, Rui Zheng, Mulong Du, David C Christiani
BACKGROUND: Individual exposure to environmental pollutants, as one of the most influential drivers of respiratory disorders, has received considerable attention due to its preventability and controllability. Considering that the extracellular vesicle (EV) was an emerging intercellular communication medium, recent studies have highlighted the crucial role of environmental pollutants derived EVs (EPE-EVs) in respiratory disorders. METHODS: PubMed and Web of Science were searched from January 2018 to December 2023 for publications with key words of environmental pollutants, respiratory disorders and EVs...
April 17, 2024: Thorax
https://read.qxmd.com/read/38630783/conduction-velocity-g-ratio-and-extracellular-water-as-microstructural-characteristics-of-autism-spectrum-disorder
#10
JOURNAL ARTICLE
Benjamin T Newman, Zachary Jacokes, Siva Venkadesh, Sara J Webb, Natalia M Kleinhans, James C McPartland, T Jason Druzgal, Kevin A Pelphrey, John Darrell Van Horn
The neuronal differences contributing to the etiology of autism spectrum disorder (ASD) are still not well defined. Previous studies have suggested that myelin and axons are disrupted during development in ASD. By combining structural and diffusion MRI techniques, myelin and axons can be assessed using extracellular water, aggregate g-ratio, and a new approach to calculating axonal conduction velocity termed aggregate conduction velocity, which is related to the capacity of the axon to carry information. In this study, several innovative cellular microstructural methods, as measured from magnetic resonance imaging (MRI), are combined to characterize differences between ASD and typically developing adolescent participants in a large cohort...
2024: PloS One
https://read.qxmd.com/read/38629037/from-tools-to-threats-a-reflection-on-the-impact-of-artificial-intelligence-chatbots-on-cognitive-health
#11
JOURNAL ARTICLE
Ismail Dergaa, Helmi Ben Saad, Jordan M Glenn, Badii Amamou, Mohamed Ben Aissa, Noomen Guelmami, Feten Fekih-Romdhane, Karim Chamari
No abstract text is available yet for this article.
2024: Frontiers in Psychology
https://read.qxmd.com/read/38627407/using-strain-to-uncover-the-interplay-between-two-and-three-dimensional-charge-density-waves-in-high-temperature-superconducting-yba-2-cu-3-o-y
#12
JOURNAL ARTICLE
I Vinograd, S M Souliou, A-A Haghighirad, T Lacmann, Y Caplan, M Frachet, M Merz, G Garbarino, Y Liu, S Nakata, K Ishida, H M L Noad, M Minola, B Keimer, D Orgad, C W Hicks, M Le Tacon
Uniaxial pressure provides an efficient approach to control charge density waves in YBa2 Cu3 Oy . It can enhance the correlation volume of ubiquitous short-range two-dimensional charge-density-wave correlations, and induces a long-range three-dimensional charge density wave, otherwise only accessible at large magnetic fields. Here, we use x-ray diffraction to study the strain dependence of these charge density waves and uncover direct evidence for a form of competition between them. We show that this interplay is qualitatively described by including strain effects in a nonlinear sigma model of competing superconducting and charge-density-wave orders...
April 16, 2024: Nature Communications
https://read.qxmd.com/read/38627370/tertiary-structure-and-conformational-dynamics-of-the-anti-amyloidogenic-chaperone-dnajb6b-at-atomistic-resolution
#13
JOURNAL ARTICLE
Vasista Adupa, Elizaveta Ustyantseva, Harm H Kampinga, Patrick R Onck
DNAJB6b is a molecular chaperone of the heat shock protein network, shown to play a crucial role in preventing aggregation of several disease-related intrinsically disordered proteins. Using homology modeling and microsecond-long all-atom molecular dynamics (MD) simulations, we show that monomeric DNAJB6b is a transiently interconverting protein cycling between three states: a closed state, an open state (both abundant), and a less abundant extended state. Interestingly, the reported regulatory autoinhibitory anchor between helix V in the G/F1 region and helices II/III of the J-domain, which obstructs the access of Hsp70 to the J-domain remains present in all three states...
April 16, 2024: Nature Communications
https://read.qxmd.com/read/38626053/availability-and-use-of-institutional-support-programs-for-emergency-department-healthcare-personnel-during-the-covid-19-pandemic
#14
JOURNAL ARTICLE
Karin F Hoth, Patrick Ten Eyck, Karisa K Harland, Anusha Krishnadasan, Robert M Rodriguez, Juan Carlos C Montoy, Linder H Wendt, William Mower, Kelli Wallace, Scott Santibañez, David A Talan, Nicholas M Mohr
OBJECTIVES: The COVID-19 pandemic placed health care personnel (HCP) at risk for stress, anxiety, burnout, and post-traumatic stress disorder (PTSD). To address this, hospitals developed programs to mitigate risk. The objectives of the current study were to measure the availability and use of these programs in a cohort of academic emergency departments (EDs) in the United States early in the pandemic and identify factors associated with program use. METHODS: Cross-sectional survey of ED HCP in 21 academic EDs in 15 states between June and September 2020...
2024: PloS One
https://read.qxmd.com/read/38622157/topology-selectivity-of-a-conformationally-flexible-precursor-through-selenium-doping
#15
JOURNAL ARTICLE
Liangliang Cai, Tianhao Gao, Andrew T S Wee
Conformational arrangements within nanostructures play a crucial role in shaping the overall configuration and determining the properties, for example in covalent/metal organic frameworks. In on-surface synthesis, conformational diversity often leads to uncontrollable or disordered structures. Therefore, the exploration of controlling and directing the conformational arrangements is significant in achieving desired nanoarchitectures. Herein, a conformationally flexible precursor 2,4,6-tris(3-bromophenyl)-1,3,5-triazine is employed, and a random phase consisting of C3h and Cs conformers is firstly obtained after deposition of the precursor on Cu(111) at room temperature to 365 K...
April 15, 2024: Nature Communications
https://read.qxmd.com/read/38613099/polyphenolic-compounds-orchestrating-intestinal-microbiota-harmony-during-aging
#16
REVIEW
Quélita Cristina Pereira, Isabela Monique Fortunato, Fabricio de Sousa Oliveira, Marisa Claudia Alvarez, Tanila Wood Dos Santos, Marcelo Lima Ribeiro
In the aging process, physiological decline occurs, posing a substantial threat to the physical and mental well-being of the elderly and contributing to the onset of age-related diseases. While traditional perspectives considered the maintenance of life as influenced by a myriad of factors, including environmental, genetic, epigenetic, and lifestyle elements such as exercise and diet, the pivotal role of symbiotic microorganisms had been understated. Presently, it is acknowledged that the intestinal microbiota plays a profound role in overall health by signaling to both the central and peripheral nervous systems, as well as other distant organs...
April 5, 2024: Nutrients
https://read.qxmd.com/read/38613087/the-power-of-psychobiotics-in-depression-a-modern-approach-through-the-microbiota-gut-brain-axis-a-literature-review
#17
REVIEW
Angela Dziedzic, Karina Maciak, Katarzyna Bliźniewska-Kowalska, Małgorzata Gałecka, Weronika Kobierecka, Joanna Saluk
The microbiota-gut-brain (MGB) axis is a complex communication network linking the gut, microbiota, and brain, influencing various aspects of health and disease. Dysbiosis, a disturbance in the gut microbiome equilibrium, can significantly impact the MGB axis, leading to alterations in microbial composition and function. Emerging evidence highlights the connection between microbiota alterations and neurological and psychiatric disorders, including depression. This review explores the potential of psychobiotics in managing depressive disorders, emphasizing their role in restoring microbial balance and influencing the MGB axis...
April 4, 2024: Nutrients
https://read.qxmd.com/read/38612834/the-profound-influence-of-gut-microbiome-and-extracellular-vesicles-on-animal-health-and-disease
#18
REVIEW
Muttiah Barathan, Sook Luan Ng, Yogeswaran Lokanathan, Min Hwei Ng, Jia Xian Law
The animal gut microbiota, comprising a diverse array of microorganisms, plays a pivotal role in shaping host health and physiology. This review explores the intricate dynamics of the gut microbiome in animals, focusing on its composition, function, and impact on host-microbe interactions. The composition of the intestinal microbiota in animals is influenced by the host ecology, including factors such as temperature, pH, oxygen levels, and nutrient availability, as well as genetic makeup, diet, habitat, stressors, and husbandry practices...
April 4, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38612813/special-issue-mitochondrial-dysfunction-a-common-trigger-in-neurodegenerative-and-metabolic-non-communicable-diseases
#19
EDITORIAL
Paola Fortini, Barbara Pascucci
Non-communicable diseases (NCDs) are non-infectious and non-transmissible chronic disorders [...].
April 3, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38611332/nutritional-characteristics-health-impact-and-applications-of-kefir
#20
REVIEW
Oladayo Emmanuel Apalowo, Grace Adeola Adegoye, Teresia Mbogori, Jayanthi Kandiah, Tolulope Mobolaji Obuotor
A global epidemiological shift has been observed in recent decades, characterized by an increase in age-related disorders, notably non-communicable chronic diseases, such as type 2 diabetes mellitus, cardiovascular and neurodegenerative diseases, and cancer. An appreciable causal link between changes in the gut microbiota and the onset of these maladies has been recognized, offering an avenue for effective management. Kefir, a probiotic-enriched fermented food, has gained significance in this setting due to its promising resource for the development of functional or value-added food formulations and its ability to reshape gut microbial composition...
March 27, 2024: Foods (Basel, Switzerland)
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