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https://read.qxmd.com/read/38652622/toward-efficient-convolutional-neural-networks-with-structured-ternary-patterns
#1
JOURNAL ARTICLE
Christos Kyrkou
High-efficiency deep learning (DL) models are necessary not only to facilitate their use in devices with limited resources but also to improve resources required for training. Convolutional neural networks (ConvNets) typically exert severe demands on local device resources and this conventionally limits their adoption within mobile and embedded platforms. This brief presents work toward utilizing static convolutional filters generated from the space of local binary patterns (LBPs) and Haar features to design efficient ConvNet architectures...
April 23, 2024: IEEE Transactions on Neural Networks and Learning Systems
https://read.qxmd.com/read/38652237/the-social-ecological-ladder-of-restoration-ambition
#2
JOURNAL ARTICLE
Marina Frietsch, Manuel Pacheco-Romero, Vicky M Temperton, Beth A Kaplin, Joern Fischer
Expanding in both scope and scale, ecosystem restoration needs to embrace complex social-ecological dynamics. To help scientists and practitioners navigate ever new demands on restoration, we propose the "social-ecological ladder of restoration ambition" as a conceptual model to approach dynamically shifting social and ecological restoration goals. The model focuses on three dynamic aspects of restoration, namely degrading processes, restoration goals and remedial actions. As these three change through time, new reinforcing and balancing feedback mechanisms characterize the restoration process...
April 23, 2024: Ambio
https://read.qxmd.com/read/38652107/a-logic-incorporated-gene-regulatory-network-deciphers-principles-in-cell-fate-decisions
#3
JOURNAL ARTICLE
Gang Xue, Xiaoyi Zhang, Wanqi Li, Lu Zhang, Zongxu Zhang, Xiaolin Zhou, Di Zhang, Lei Zhang, Zhiyuan Li
Organisms utilize gene regulatory networks (GRN) to make fate decisions, but the regulatory mechanisms of transcription factors (TF) in GRNs are exceedingly intricate. A longstanding question in this field is how these tangled interactions synergistically contribute to decision-making procedures. To comprehensively understand the role of regulatory logic in cell fate decisions, we constructed a logic-incorporated GRN model and examined its behavior under two distinct driving forces (noise-driven and signal-driven)...
April 23, 2024: ELife
https://read.qxmd.com/read/38651985/environmental-and-social-impacts-of-carbon-sequestration
#4
REVIEW
Álvaro Enríquez-de-Salamanca
Climate change requires major mitigation efforts, mainly emission reduction. Carbon sequestration and avoided deforestation are complementary mitigation strategies that can promote nature conservation and local development but may also have undesirable impacts. We reviewed 246 articles citing impacts, risks, or concerns from carbon projects, and 78 others related to this topic. Most of the impacts cited focus on biodiversity, especially in afforestation projects, and on social effects related to avoided deforestation projects...
April 23, 2024: Integrated Environmental Assessment and Management
https://read.qxmd.com/read/38651876/motility-activating-mutations-upstream-of-flhdc-reduce-acid-shock-survival-of-escherichia-coli
#5
JOURNAL ARTICLE
Kilian Schumacher, Djanna Braun, Karin Kleigrewe, Kirsten Jung
Many neutralophilic bacterial species try to evade acid stress with an escape strategy, which is reflected in the increased expression of genes coding for flagellar components. Extremely acid-tolerant bacteria, such as Escherichia coli , survive the strong acid stress, e.g., in the stomach of vertebrates. Recently, we were able to show that the induction of motility genes in E. coli is strictly dependent on the degree of acid stress, i.e., they are induced under mild acid stress but not under severe acid stress...
April 23, 2024: Microbiology Spectrum
https://read.qxmd.com/read/38651581/clinical-decision-making-for-va-ecmo-weaning-in-patients-with-cardiogenic-shock-a-formative-qualitative-study
#6
JOURNAL ARTICLE
J A J Hermens, J A van Til, C L Meuwese, D van Dijk, D W Donker
Weaning and liberation from VA ECMO in cardiogenic shock patients comprises a complex process requiring a continuous trade off between multiple clinical parameters. In the absence of dedicated international guidelines, we hypothesized a great heterogeneity in weaning practices among ECMO centers due to a variety in local preferences, logistics, case load and individual professional experience. This qualitative study focused on the appraisal of clinicians' preferences in decision processes towards liberation from VA ECMO after cardiogenic shock while using focus group interviews in 4 large hospitals...
April 2024: Perfusion
https://read.qxmd.com/read/38650708/implications-for-nitrogen-and-sulphur-cycles-phylogeny-and-niche-range-of-nitrospirota-in-terrestrial-aquifers
#7
JOURNAL ARTICLE
Olivia E Mosley, Emilie Gios, Kim M Handley
Increasing evidence suggests Nitrospirota are important contributors to aquatic and subsurface nitrogen and sulphur cycles. We determined the phylogenetic and ecological niche associations of Nitrospirota colonizing terrestrial aquifers. Nitrospirota compositions were determined across 59 groundwater wells. Distributions were strongly influenced by oxygen availability in groundwater, marked by a trade-off between aerobic ( Nitrospira , Leptospirillum ) and anaerobic ( Thermodesulfovibrionia , unclassified) lineages...
January 2024: ISME Commun
https://read.qxmd.com/read/38650117/are-some-species-more-sensitive-to-environmental-change-than-others-it-may-all-depend-on-the-context
#8
JOURNAL ARTICLE
Laura Touzot, Maria Paniw
Research Highlight: Rademaker, M., van Leeuwen, A., & Smallegange, I. M. (2024). Why we cannot always expect life history strategies to directly inform on sensitivity to environmental change. Journal of Animal Ecology, https://doi.org/10.1111/1365-2656.14050. Ecological studies have long delved into how organisms allocate energy between reproduction and somatic maintenance to maximize fitness. This allocation gives rise to various life-history strategies, and these strategies have been shown to predict how populations respond to environmental change, allowing us to generalize potential responses to increasing human pressures...
April 22, 2024: Journal of Animal Ecology
https://read.qxmd.com/read/38649443/isolation-and-characterisation-of-a-novel-silviavirus-bacteriophage-promising-antimicrobial-agent-against-methicillin-resistant-staphylococcus-aureus-infections
#9
JOURNAL ARTICLE
Varintip Lerdsittikul, Sukanya Apiratwarrasakul, Thassanant Atithep, Patoo Withatanung, Nitaya Indrawattana, Pornpan Pumirat, Somjit Chaiwattanarungruengpaisan, Metawee Thongdee
The increasing prevalence of methicillin-resistant Staphylococcus aureus (MRSA) emphasises the urgent need for novel antimicrobial agents as alternatives to antibiotics. Bacteriophage therapy is one of the most promising antimicrobial strategies. Here, we isolated and comprehensively characterized a novel Staphylococcus phage, vB_SauM_VL10 (VL10), from urban sewage. The VL10 genome displays 141,746 bp of linear double-stranded DNA, containing 193 open reading frames and lacking tRNA, virulence, or antibiotic resistance genes...
April 22, 2024: Scientific Reports
https://read.qxmd.com/read/38649162/synchronized-expansion-and-contraction-of-olfactory-vomeronasal-and-taste-receptor-gene-families-in-hystricomorph-rodents
#10
JOURNAL ARTICLE
Yoshihito Niimura, Bhim B Biswa, Takushi Kishida, Atsushi Toyoda, Kazumichi Fujiwara, Masato Ito, Kazushige Touhara, Miho Inoue-Murayama, Scott H Jenkins, Christopher Adenyo, Boniface B Kayang, Tsuyoshi Koide
Chemical senses, including olfaction, pheromones, and taste, are crucial for the survival of most animals. There has long been a debate about whether different types of senses might influence each other. For instance, primates with a strong sense of vision are thought to have weakened olfactory abilities, although the oversimplified trade-off theory is now being questioned. It is uncertain whether such interactions between different chemical senses occur during evolution. To address this question, we examined four receptor gene families related to olfaction, pheromones, and taste: olfactory receptor (OR), vomeronasal receptor type 1 and type 2 (V1R and V2R), and bitter taste receptor (T2R) genes in Hystricomorpha, which is morphologically and ecologically the most diverse group of rodents...
April 2, 2024: Molecular Biology and Evolution
https://read.qxmd.com/read/38649156/external-pressure-in-polymer-based-lithium-metal-batteries-an-often-neglected-criterion-when-evaluating-cycling-performance
#11
JOURNAL ARTICLE
Philipp Roering, Gerrit Michael Overhoff, Kun Ling Liu, Martin Winter, Gunther Brunklaus
Solid-state batteries based on lithium metal anodes, solid electrolytes, and composite cathodes constitute a promising battery concept for achieving high energy density. Charge carrier transport within the cells is governed by solid-solid contacts, emphasizing the importance of well-designed interfaces. A key parameter for enhancing the interfacial contacts among electrode active materials and electrolytes comprises externally applied pressure onto the cell stack, particularly in the case of ceramic electrolytes...
April 22, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38649048/a-recipe-for-change-analyzing-the-climate-and-ecosystem-impacts-of-the-brazilian-diet-shift
#12
JOURNAL ARTICLE
Tamar Bakman, Bettina Susanne Hoffmann, Joana Portugal-Pereira
Diet shift is an opportunity to mitigate the impacts of food systems, which are responsible for about a third of greenhouse gas (GHG) emissions globally and exert various environmental pressures on ecosystems. This study evaluates the mitigation potential of both global and local environmental impacts through dietary changes within the Brazilian context. Furthermore, the study aims to identify the potential benefits and trade-offs that may arise from these dietary transitions, thus providing a comprehensive analysis of the overall environmental implications...
April 20, 2024: Science of the Total Environment
https://read.qxmd.com/read/38649042/food-energy-water-nexus-in-compliance-with-sustainable-development-goals-for-integrating-and-managing-the-core-environmental-verticals-for-sustainable-energy-and-circular-economy
#13
JOURNAL ARTICLE
Nikita Verma, Prakhar Talwar, Apoorva Upadhyay, Rickwinder Singh, Christoph Lindenberger, Nidhi Pareek, Prakash Kumar Sarangi, Antonis A Zorpas, Vivekanand Vivekanand
Food, energy, and water resources are intricately interconnected, and nexus provides a holistic approach for addressing these complex links to minimize inefficiencies and waste. Nexus approach and circular economy are considered as effective solutions for sustainability. Quantification of these relations is the first step towards incorporating nexus modeling which helps sustainable production and consumption. For achieving the Sustainable Development Goals, understanding and effectively managing the FEW nexus becomes imperative...
April 20, 2024: Science of the Total Environment
https://read.qxmd.com/read/38648726/intercropping-improves-maize-yield-and-nitrogen-uptake-by-regulating-nitrogen-transformation-and-functional-microbial-abundance-in-rhizosphere-soil
#14
JOURNAL ARTICLE
Yizhe Wang, Yuping Zhang, Ziyu Yang, Jiangchi Fei, Xuan Zhou, Xiangmin Rong, Jianwei Peng, Gongwen Luo
Intercropping-driven changes in nitrogen (N)-acquiring microbial genomes and functional expression regulate soil N availability and plant N uptake. However, present data seem to be limited to a specific community, obscuring the viewpoint of entire N-acquiring microbiomes and functions. Taking maize intercropped with legumes (peanut and soybean) and non-legumes (gingelly and sweet potato) as models, we studied the effects of intercropping on N transformations and N-acquiring microbiomes in rhizosphere soil across four maize growth stages...
April 21, 2024: Journal of Environmental Management
https://read.qxmd.com/read/38648667/eliminating-the-adverse-impact-of-composition-modulation-in-perovskite-light-emitting-diodes-towards-ultra-high-brightness-and-stability
#15
JOURNAL ARTICLE
Zhiqi Li, Zhiwei Ren, Qiong Liang, Patrick W K Fong, Jianjun Tian, Gang Li
Excess ammonium halides as composition additives have been widely employed in perovskite light-emitting diodes (PeLEDs), aiming to achieve high performance by controlling crystallinity and passivating defects. However, an in-depth understanding whether excess organoammonium components affect the film physical/electrical properties and the resultant device instability is still lacking. Here, we point the trade-off between the performance and stability in high-efficiency formamidinium lead iodide (FAPbI3 )-based PeLEDs with excess ammonium halides, and explore the underlying mechanism...
April 22, 2024: Advanced Materials
https://read.qxmd.com/read/38648610/effect-of-counterion-size-on-knotted-polyelectrolyte-conformations
#16
JOURNAL ARTICLE
Andrea Tagliabue, Cristian Micheletti, Massimo Mella
Using Langevin dynamics simulations and a coarse-grained primitive model of electrolytes, we show that the behavior of knotted circular strong polyelectrolytes (PEs) in diluted aqueous solution is largely affected by the diameter of the counterions (CIs), σCI . Indeed, we observe that both gyration radius and knot length vary nonmonotonically with σCI , with both small and bulky CIs favoring knot localization, while medium-sized ones promote delocalized knots. We also show that the conformational change from delocalized to tight knots occurs via the progressive coalescence of the knot's essential crossings...
April 22, 2024: Journal of Physical Chemistry. B
https://read.qxmd.com/read/38648261/the-effect-of-cellulose-nanocrystal-reassembly-on-latex-based-pressure-sensitive-adhesive-performance
#17
JOURNAL ARTICLE
Parisa Bayat, Kelly M Meek, Maryam Movafagh, Emily D Cranston, Michael F Cunningham, Pascale Champagne, Timothy Morse, Michael V Kiriakou, Sean R George, Marc A Dubé
Different cellulose nanocrystal (CNC) forms (dried vs never-dried) can lead to different degrees of CNC reassembly, the formation of nanofibril-like structures, in nanocomposite latex-based pressure-sensitive adhesive (PSA) formulations. CNC reassembly is also affected by CNC sonication and loading as well as the protocol used for CNC addition to the polymerization. In this study, carboxylated CNCs (cCNCs) were incorporated into a seeded, semibatch, 2-ethylhexyl acrylate/methyl methacrylate/styrene emulsion polymerization and cast as pressure-sensitive adhesive (PSA) films...
April 22, 2024: Biomacromolecules
https://read.qxmd.com/read/38647045/live-cell-imaging-reveals-the-trade-off-between-target-search-flexibility-and-efficiency-for-cas9-and-cas12a
#18
JOURNAL ARTICLE
Lorenzo Olivi, Cleo Bagchus, Victor Pool, Ezra Bekkering, Konstantin Speckner, Hidde Offerhaus, Wen Y Wu, Martin Depken, Koen J A Martens, Raymond H J Staals, Johannes Hohlbein
CRISPR-Cas systems have widely been adopted as genome editing tools, with two frequently employed Cas nucleases being SpyCas9 and LbCas12a. Although both nucleases use RNA guides to find and cleave target DNA sites, the two enzymes differ in terms of protospacer-adjacent motif (PAM) requirements, guide architecture and cleavage mechanism. In the last years, rational engineering led to the creation of PAM-relaxed variants SpRYCas9 and impLbCas12a to broaden the targetable DNA space. By employing their catalytically inactive variants (dCas9/dCas12a), we quantified how the protein-specific characteristics impact the target search process...
April 22, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38646181/machine-learning-interatomic-potential-bridge-the-gap-between-small-scale-models-and-realistic-device-scale-simulations
#19
REVIEW
Guanjie Wang, Changrui Wang, Xuanguang Zhang, Zefeng Li, Jian Zhou, Zhimei Sun
Machine learning interatomic potential (MLIP) overcomes the challenges of high computational costs in density-functional theory and the relatively low accuracy in classical large-scale molecular dynamics, facilitating more efficient and precise simulations in materials research and design. In this review, the current state of the four essential stages of MLIP is discussed, including data generation methods, material structure descriptors, six unique machine learning algorithms, and available software. Furthermore, the applications of MLIP in various fields are investigated, notably in phase-change memory materials, structure searching, material properties predicting, and the pre-trained universal models...
May 17, 2024: IScience
https://read.qxmd.com/read/38645976/practical-potential-of-suspension-electrodes-for-enhanced-limiting-currents-in-electrochemical-co-2-reduction
#20
JOURNAL ARTICLE
Nathalie E G Ligthart, Gerard Prats Vergel, Johan T Padding, David A Vermaas
CO2 conversion is an important part of the transition towards clean fuels and chemicals. However, low solubility of CO2 in water and its slow diffusion cause mass transfer limitations in aqueous electrochemical CO2 reduction. This significantly limits the partial current densities towards any desired CO2 -reduction product. We propose using flowable suspension electrodes to spread the current over a larger volume and alleviate mass transfer limitations, which could allow high partial current densities for CO2 conversion even in aqueous environments...
April 18, 2024: Energy Adv
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