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https://www.readbyqxmd.com/read/30100741/the-role-of-lncrna-casc2-on-prognosis-of-malignant-tumors-a-meta-analysis-and-bioinformatics
#1
Lingling Yu, Shengsong Chen, Hui Bao, Weifang Zhang, Minqi Liao, Qian Liang, Xiaoshu Cheng
Background: Cancer susceptibility candidate 2 (CASC2) is characterized as a tumor suppressor, which was first identified to be downregulated in endometrial carcinoma. Accumulating evidence was provided to testify the function of CASC2 in malignant tumors. However, a systematic and quantitative assessment is not available. The present study was designed to evaluate the role of CASC2 in multiple carcinomas through meta-analysis and bioinformatics. Materials and methods: A systematic assessment of the relationship of CASC2 with tumors was performed by using several computerized databases from inception to December 1, 2017...
2018: OncoTargets and Therapy
https://www.readbyqxmd.com/read/30066858/downregulation-of-hoxa3-in-lung-adenocarcinoma-and-its-relevant-molecular-mechanism-analysed-by-rt-qpcr-tcga-and-in-silico-analysis
#2
Bin-Liang Gan, Rong-Quan He, Yu Zhang, Dan-Ming Wei, Xiao-Hua Hu, Gang Chen
Recent studies have indicated that homeobox A3 (HOXA3) functions as a carcinogen in colon cancer and the methylation level of HOXA3 is significantly increased in lung adenocarcinoma (LUAD) tissues. However, at least to the best of our knowledge, few studies to date have been performed on HOXA3 in non-small cell lung cancer (NSCLC). Therefore, further studies on HOXA3 expression in NSCLC and the potential regulatory mechanisms are urgently required. In this study, HOXA3 expression in 55 tissues of cases of NSCLC and corresponding non-lung cancer tissues was detected by reverse transcription-quantitative PCR (RT-qPCR)...
July 30, 2018: International Journal of Oncology
https://www.readbyqxmd.com/read/30065752/identification-of-dapk1-promoter-hypermethylation-as-a-biomarker-for-intra-epithelial-lesion-and-cervical-cancer-a-meta-analysis-of-published-studies-tcga-and-geo-datasets
#3
Xue-Bin Wang, Ning-Hua Cui, Xia-Nan Liu, Jun-Fen Ma, Qing-Hua Zhu, Shu-Ren Guo, Jun-Wei Zhao, Liang Ming
Background: Promoter hypermethylation in death-associated protein kinase 1 ( DAPK1 ) gene has been long linked to cervical neoplasia, but the established results remained controversial. Here, we performed a meta-analysis to assess the associations of DAPK1 promoter hypermethylation with low-grade intra-epithelial lesion (HSIL), high-grade intra-epithelial lesion (HSIL), cervical cancer (CC), and clinicopathological features of CC. Methods: Published studies with qualitative methylation data were initially searched from PubMed, Web of Science, EMBASE, and China National Knowledge Infrastructure databases (up to March 2018)...
2018: Frontiers in Genetics
https://www.readbyqxmd.com/read/30037718/using-micrornas-as-novel-predictors-of-urologic-cancer-survival-an-integrated-analysis
#4
Zhicong Chen, Yonghao Zhan, Jieshan Chi, Shuyuan Guo, Xinliang Zhong, Anbang He, Jianrong Zheng, Yanqing Gong, Xuesong Li, Liqun Zhou
BACKGROUND: MicroRNAs(miRNAs) are involved in the formation, maintenance, and metastasis of urologic cancer. Here, we aim to gather and evaluate all of the evidence regarding the potential role of miRNAs as novel predictors of urologic cancer survival. METHODS: A systematic review was performed to identify and score all of the published studies that evaluated the prognostic effects of miRNAs in kidney (KCa), bladder (BCa) or prostate cancer (PCa). Where appropriate, the summary effects of miRNAs on urologic cancer were meta-analysed...
July 20, 2018: EBioMedicine
https://www.readbyqxmd.com/read/30035102/b7h3-as-a-promoter-of-metastasis-and-promising-therapeutic-target
#5
REVIEW
Peixin Dong, Ying Xiong, Junming Yue, Sharon J B Hanley, Hidemichi Watari
B7H3 (also known as CD276, an immune checkpoint molecule) is aberrantly overexpressed in many types of cancer, and such upregulation is generally associated with a poor clinical prognosis. Recent discoveries indicate a crucial role for B7H3 in promoting carcinogenesis and metastasis. This review will focus on the latest developments relating specifically to the oncogenic activity of B7H3 and will describe the upstream regulators and downstream effectors of B7H3 in cancer. Finally, we discuss the emerging roles of microRNAs (miRNAs) in inhibiting B7H3-mediated tumor promotion...
2018: Frontiers in Oncology
https://www.readbyqxmd.com/read/30007991/investigation-of-mir-490-3p-expression-in-hepatocellular-carcinoma-based-on-reverse-transcription-polymerase-chain-reaction-rt-qpcr-and-a-meta-analysis-of-749-cases
#6
Ming-Fen Li, Jing-Jing Zeng, Ai-Ping Pan, Ying-Hui Lin, Hong-Sheng Lin, Rong-Zhen Zhang, Lei Yang, Yu Zhang, Yi-Wu Dang, Gang Chen
BACKGROUND miR-490-3p could play vital roles in multiple cancers. However, the role of miR-490-3p in hepatocellular carcinoma (HCC) remains uncertain. In this study, we sought to explore the underlying role of miR-490-3p in HCC. MATERIAL AND METHODS In this study, we explored the clinical role of miR-490-3p in HCC via quantitative reverse transcription-polymerase chain reaction (RT-qPCR) and The Cancer Genome Atlas (TCGA) database. Then, a meta-analysis was performed to evaluate the expression trend and diagnostic value of miR-490-3p in HCC...
July 15, 2018: Medical Science Monitor: International Medical Journal of Experimental and Clinical Research
https://www.readbyqxmd.com/read/29997523/prognostic-value-of-hmga2-in-human-cancers-a-meta-analysis-based-on-literatures-and-tcga-datasets
#7
Ben Huang, Jiayi Yang, Qingyuan Cheng, Peipei Xu, June Wang, Zheng Zhang, Wei Fan, Ping Wang, Mingxia Yu
Background: Emerging evidences have shown that the high-mobility group protein A2 (HMGA2) can aberrantly express in human cancers, and it could be an unfavorable prognostic factor in cancer patients. However, the prognostic value of HMGA2 was still unclear. Therefore, in this study, we explored the potential prognostic value of HMGA2 in human cancers by using meta-analysis based on published literatures and The Cancer Genome Atlas (TCGA) datasets. Methods: Through searching PubMed, Embase, Web of Science and Cochrane Library databases, we were able to identify the studies evaluating the prognostic value of HMGA2 in cancers...
2018: Frontiers in Physiology
https://www.readbyqxmd.com/read/29997385/expression-of-microrna-99a-3p-in-prostate-cancer-based-on-bioinformatics-data-and-meta-analysis-of-a-literature-review-of-965-cases
#8
Hai-Biao Yan, Yu Zhang, Jie-Mei Cen, Xiao Wang, Bin-Liang Gan, Jia-Cheng Huang, Jia-Yi Li, Qian-Hui Song, Sheng-Hua Li, Gang Chen
BACKGROUND microRNAs (miRNAs) have a role as biomarkers in human cancer. The aim of this study was to use bioinformatics data, and review of cases identified from the literature, to investigate the role of microRNA-99a-3p (miR-99a-3p) in prostate cancer, including the identification of its target genes and signaling pathways. MATERIAL AND METHODS Meta-analysis from a literature review included 965 cases of prostate cancer. Bioinformatics databases interrogated for miR-99a-3p in prostate cancer included The Cancer Genome Atlas (TCGA), the Gene Expression Omnibus (GEO), and ArrayExpress...
July 12, 2018: Medical Science Monitor: International Medical Journal of Experimental and Clinical Research
https://www.readbyqxmd.com/read/29975928/a-preliminary-investigation-of-pvt1-on-the-effect-and-mechanisms-of-hepatocellular-carcinoma-evidence-from-clinical-data-a-meta-analysis-of-840-cases-and-in-vivo-validation
#9
Yu Zhang, Dong-Yue Wen, Rui Zhang, Jia-Cheng Huang, Peng Lin, Fang-Hui Ren, Xiao Wang, Yun He, Hong Yang, Gang Chen, Dian-Zhong Luo
BACKGROUND/AIMS: Hepatocellular carcinoma (HCC) remains a difficult problem that significantly affects the survival of the afflicted patients. Accumulating evidence has demonstrated the functions of long non-coding RNA (lncRNA) in HCC. In the present study, we aimed to explore the potential roles of PVT1 in the tumorigenesis and progression of HCC. METHODS: In this study, quantitative reverse transcription-polymerase chain reaction (RT-qPCR) was applied to detect the differences between PVT1 expression in HCC tissues and cell lines...
2018: Cellular Physiology and Biochemistry
https://www.readbyqxmd.com/read/29955607/high-vimentin-expression-predicts-a-poor-prognosis-and-progression-in-colorectal-cancer-a-study-with-meta-analysis-and-tcga-database
#10
REVIEW
Le Du, Jingchuan Li, Lei Lei, Hongjuan He, Erfei Chen, Jing Dong, Jin Yang
The aim of this study was to evaluate the role of vimentin expression in the prognosis and progression of CRC. Meta-analysis was conducted to investigate the correlations between vimentin and prognosis and clinicopathological features in CRC. Literatures were searched by PubMed, Embase, ClinicalKey, CNKI, VIP, and WanFang databases. The Cancer Genome Atlas (TCGA) database was used to assess the association of vimentin expression with survival rate in CRC. Eleven reports with 1969 cases were included in the meta-analysis...
2018: BioMed Research International
https://www.readbyqxmd.com/read/29945567/pancreatic-cancer-as-a-sentinel-for-hereditary-cancer-predisposition
#11
Erin L Young, Bryony A Thompson, Deborah W Neklason, Matthew A Firpo, Theresa Werner, Russell Bell, Justin Berger, Alison Fraser, Amanda Gammon, Cathryn Koptiuch, Wendy K Kohlmann, Leigh Neumayer, David E Goldgar, Sean J Mulvihill, Lisa A Cannon-Albright, Sean V Tavtigian
BACKGROUND: Genes associated with hereditary breast and ovarian cancer (HBOC) and colorectal cancer (CRC) predisposition have been shown to play a role in pancreatic cancer susceptibility. Growing evidence suggests that pancreatic cancer may be useful as a sentinel cancer to identify families that could benefit from HBOC or CRC surveillance, but to date pancreatic cancer is only considered an indication for genetic testing in the context of additional family history. METHODS: Preliminary data generated at the Huntsman Cancer Hospital (HCH) included variants identified on a custom 34-gene panel or 59-gene panel including both known HBOC and CRC genes for respective sets of 66 and 147 pancreatic cancer cases, unselected for family history...
June 27, 2018: BMC Cancer
https://www.readbyqxmd.com/read/29931708/cx43-c-terminus-directly-inhibits-the-hyper-phosphorylation-of-akt-erk-via-protein-protein-interactions-in-glioblastoma
#12
Jing-Ya Kuang, Yu-Feng Guo, Ying Chen, Jun Wang, Jiang-Jie Duan, Xiao-Li He, Lin Li, Shi-Cang Yu, Xiu-Wu Bian
Although the deregulation of epidermal growth factor receptor (EGFR) is one of the most common molecular mechanisms of glioblastoma (GBM) pathogenesis, the efficacy of anti-EGFR therapy is limited. Additionally, response to anti-EGFR therapy is not solely dependent on EGFR expression and is more promising in patients with reduced activity of EGFR downstream signaling pathways. Thus, there is considerable interest in identifying the compensatory regulatory factors of the EGFR signaling pathway to improve the efficacy of anti-EGFR therapies for GBM...
June 21, 2018: Cancer Science
https://www.readbyqxmd.com/read/29914539/evaluation-of-the-hoxa11-level-in-patients-with-lung-squamous-cancer-and-insights-into-potential-molecular-pathways-via-bioinformatics-analysis
#13
Rui Zhang, Tong-Tong Zhang, Gao-Qiang Zhai, Xian-Yu Guo, Yuan Qin, Ting-Qing Gan, Yu Zhang, Gang Chen, Wei-Jia Mo, Zhen-Bo Feng
BACKGROUND: This study was carried out to discover the underlying role that HOXA11 plays in lung squamous cancer (LUSC) and uncover the potential corresponding molecular mechanisms and functions of HOXA11-related genes. METHODS: Twenty-three clinical paired LUSC and non-LUSC samples were utilized to examine the level of HOXA11 using quantitative real-time polymerase chain reaction (qRT-PCR). The clinical significance of HOXA11 was systematically analyzed based on 475 LUSC and 18 non-cancerous adjacent tissues from The Cancer Genome Atlas (TCGA) database...
June 18, 2018: World Journal of Surgical Oncology
https://www.readbyqxmd.com/read/29896277/-mlh1-promoter-methylation-and-prediction-prognosis-of-gastric-cancer-a-systematic-review-and-meta-and-bioinformatic-analysis
#14
Shixuan Shen, Xiaohui Chen, Hao Li, Liping Sun, Yuan Yuan
Background: The promoter methylation of MLH1 gene and gastric cancer (GC)has been investigated previously. To get a more credible conclusion, we performed a systematic review and meta and bioinformatic analysis to clarify the role of MLH1 methylation in the prediction and prognosis of GC. Methods: Eligible studies were targeted after searching the PubMed, Web of Science, Embase, BIOSIS, CNKI and Wanfang Data to collect the information of MLH1 methylation and GC. The link strength between the two was estimated by odds ratio with its 95% confidence interval...
2018: Journal of Cancer
https://www.readbyqxmd.com/read/29883634/mir-139-in-digestive-system-tumor-diagnosis-and-detection-bioinformatics-and-meta-analysis
#15
REVIEW
Yu-Hui Wang, Jia Ji, Hong Weng, Bi-Cheng Wang, Fu-Bing Wang
BACKGROUND: Accumulating evidence has indicated that microRNAs play important roles in the initiation and progression of digestive system tumors. However, previous studies suggest that the accuracy of miRNA detection in digestive system tumors was inconsistent. METHODS: The candidate miRNAs were obtained from The Cancer Genome Atlas (TCGA). Meta-analysis was performed to evaluate the diagnostic value of these miRNAs in digestive system tumors. Furthermore, the potential target genes of the miRNAs were predicted and assessed with functional analysis...
June 5, 2018: Clinica Chimica Acta; International Journal of Clinical Chemistry
https://www.readbyqxmd.com/read/29861410/rankprod-combined-with-genetic-algorithm-optimized-artificial-neural-network-establishes-a-diagnostic-and-prognostic-prediction-model-that-revealed-c1qtnf3-as-a-biomarker-for-prostate-cancer
#16
Qi Hou, Zhi-Tong Bing, Cheng Hu, Mao-Yin Li, Ke-Hu Yang, Zu Mo, Xiang-Wei Xie, Ji-Lin Liao, Yan Lu, Shigeo Horie, Ming-Wu Lou
Prostate cancer (PCa) is the most commonly diagnosed cancer in males in the Western world. Although prostate-specific antigen (PSA) has been widely used as a biomarker for PCa diagnosis, its results can be controversial. Therefore, new biomarkers are needed to enhance the clinical management of PCa. From publicly available microarray data, differentially expressed genes (DEGs) were identified by meta-analysis with RankProd. Genetic algorithm optimized artificial neural network (GA-ANN) was introduced to establish a diagnostic prediction model and to filter candidate genes...
June 2018: EBioMedicine
https://www.readbyqxmd.com/read/29805592/the-expression-of-hoxa13-in-lung-adenocarcinoma-and-its-clinical-significance-a-study-based-on-the-cancer-genome-atlas-oncomine-and-reverse-transcription-quantitative-polymerase-chain-reaction
#17
Yun Deng, Rongquan He, Rui Zhang, Binliang Gan, Yu Zhang, Gang Chen, Xiaohua Hu
Previous studies have investigated the association between HOXA13 and non-small cell lung cancer. However, the role of HOXA13 expression in the occurrence and progression of lung adenocarcinoma (LUAD) has not yet been investigated. In the present study, HOXA13-related data mining of The Cancer Genome Atlas (TCGA), polymerase chain reaction (PCR) data from our cases and the case information in Oncomine was conducted for validation. The expression data of HOXA13 in lung cancer cell lines were also collected from the Cancer Cell Line Encyclopedia (CCLE) database for further verification...
June 2018: Oncology Letters
https://www.readbyqxmd.com/read/29769662/novel-internal-regulators-and-candidate-mirnas-within-mir-379-mir-656-mirna-cluster-can-alter-cellular-phenotype-of-human-glioblastoma
#18
Subhashree Nayak, Meghali Aich, Anupam Kumar, Suman Sengupta, Prajakta Bajad, Parashar Dhapola, Deepanjan Paul, Kiran Narta, Suvendu Purkrait, Bharati Mehani, Ashish Suri, Debojyoti Chakraborty, Arijit Mukhopadhyay, Chitra Sarkar
Clustered miRNAs can affect functioning of downstream pathways due to possible coordinated function. We observed 78-88% of the miR-379/miR-656 cluster (C14MC) miRNAs were downregulated in three sub-types of diffuse gliomas, which was also corroborated with analysis from The Cancer Genome Atlas (TCGA) datasets. The miRNA expression levels decreased with increasing tumor grade, indicating this downregulation as an early event in gliomagenesis. Higher expression of the C14MC miRNAs significantly improved glioblastioma prognosis (Pearson's r = 0...
May 16, 2018: Scientific Reports
https://www.readbyqxmd.com/read/29750962/long-noncoding-rna-cytor-in-cancer-a-tcga-data-review
#19
REVIEW
Jiayu Liang, Xin Wei, Zhihong Liu, Dehong Cao, Yongquan Tang, Zijun Zou, Chuan Zhou, Yiping Lu
BACKGROUND AND AIMS: Increasing evidence has shown the critical role of long non-coding RNA cytoskeleton regulator (CYTOR) in cancers. The expression of CYTOR is reported to be up-regulated in many kinds of cancers, such as gastric cancer, hepatocellular carcinoma, colon cancer, lung adenocarcinoma, oesophageal squamous cell carcinoma and renal cell carcinoma. Here, we summarized related studies and performed a meta-analysis to investigate the prognostic value of CYTOR in multiple cancers...
August 2018: Clinica Chimica Acta; International Journal of Clinical Chemistry
https://www.readbyqxmd.com/read/29749535/oncogenic-role-of-mir%C3%A2-183%C3%A2-5p-in-lung-adenocarcinoma-a-comprehensive-study-of-qpcr-in-vitro-experiments-and-bioinformatic-analysis
#20
Rong-Quan He, Li Gao, Jie Ma, Zu-Yun Li, Xiao-Hua Hu, Gang Chen
Despite the fact that previous studies have reported the aberrant expression of miR‑183‑5p in lung adenocarcinoma (LUAD), the oncogenic role of miR‑183‑5p in LUAD and its underlying mechanisms have remained elusive. Hence, we attempted to elucidate the clinicopathological significance of miR‑183‑5p expression in LUAD and identify the biological function of miR‑183‑5p in LUAD in this study. Meta‑analysis of Gene Expression Omnibus (GEO) data, data mining of The Cancer Genome Atlas (TCGA) and real‑time quantitative polymerase chain reaction (qPCR) were performed to evaluate the clinicopathological significance of miR‑183‑5p in LUAD...
July 2018: Oncology Reports
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