keyword
https://read.qxmd.com/read/38612726/targeting-group-3-medulloblastoma-by-the-anti-prune-1-and-anti-lsd1-kdm1a-epigenetic-molecules
#1
JOURNAL ARTICLE
Francesca Bibbò, Fatemeh Asadzadeh, Angelo Boccia, Carmen Sorice, Orazio Bianco, Carmen Daniela Saccà, Barbara Majello, Vittoria Donofrio, Delfina Bifano, Lucia De Martino, Lucia Quaglietta, Adriana Cristofano, Eugenio Maria Covelli, Giuseppe Cinalli, Veronica Ferrucci, Pasqualino De Antonellis, Massimo Zollo
Medulloblastoma (MB) is a highly malignant childhood brain tumor. Group 3 MB (Gr3 MB) is considered to have the most metastatic potential, and tailored therapies for Gr3 MB are currently lacking. Gr3 MB is driven by PRUNE-1 amplification or overexpression. In this paper, we found that PRUNE-1 was transcriptionally regulated by lysine demethylase LSD1/KDM1A. This study aimed to investigate the therapeutic potential of inhibiting both PRUNE-1 and LSD1/KDM1A with the selective inhibitors AA7.1 and SP-2577, respectively...
March 31, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38602877/ptch1-is-essential-for-cochlear-marginal-cell-differentiation-and-stria-vascularis-formation
#2
JOURNAL ARTICLE
Tianli Qin, Karl Kam Hei So, Chi-Chung Hui, Mai Har Sham
A common cause of deafness in humans is dysregulation of the endocochlear potential generated by the stria vascularis (SV). Thus, proper formation of the SV is critical for hearing. Using single-cell transcriptomics and a series of Shh signaling mutants, we discovered that the Shh receptor Patched1 (Ptch1) is essential for marginal cell (MC) differentiation and SV formation. Single-cell RNA sequencing analyses revealed that the cochlear roof epithelium is already specified into discrete domains with distinctive gene expression profiles at embryonic day 14, with Gsc as a marker gene of the MC lineage...
April 10, 2024: Cell Reports
https://read.qxmd.com/read/38591011/restoring-vision-in-adult-amblyopia-by-enhancing-plasticity-through-deletion-of-the-transcriptional-repressor-rest
#3
JOURNAL ARTICLE
Dmytro Shmal, Giulia Mantero, Thomas Floss, Fabio Benfenati, José Fernando Maya-Vetencourt
Visual cortical plasticity is high during early life, but gradually decreases with development. This is due to the Otx2-driven maturation of intracortical inhibition that parallels the condensation of extracellular matrix components into perineuronal nets mainly around parvalbumin-positive GABAergic neurons. Repressor Element 1 Silencing Transcription (REST) epigenetically controls the expression of a plethora of neuron-specific genes. We demonstrate that the conditional knockout of REST in the primary visual cortex of adult mice induces a shift of ocular dominance after short-term monocular deprivation and promotes the recovery of vision in long-term deprived animals after reverse suture...
April 19, 2024: IScience
https://read.qxmd.com/read/38580401/systematic-mapping-of-tf-mediated-cell-fate-changes-by-a-pooled-induction-coupled-with-scrna-seq-and-multi-omics-approaches
#4
JOURNAL ARTICLE
Muyoung Lee, Qingqing Guo, Mijeong Kim, Joonhyuk Choi, Alia Segura, Alper Genceroglu, Lucy LeBlanc, Nereida Ramirez, Yu Jin Jang, Yeejin Jang, Bum-Kyu Lee, Edward M Marcotte, Jonghwan Kim
Transcriptional regulation controls cellular functions through interactions between transcription factors (TFs) and their chromosomal targets. However, understanding the fate conversion potential of multiple TFs in an inducible manner remains limited. Here, we introduce iTF-seq as a method for identifying individual TFs that can alter cell fate toward specific lineages at a single-cell level. iTF-seq enables time course monitoring of transcriptome changes, and with biotinylated individual TFs, it provides a multi-omics approach to understanding the mechanisms behind TF-mediated cell fate changes...
April 5, 2024: Genome Research
https://read.qxmd.com/read/38574408/enhanced-resolution-profiling-in-twins-reveals-differential-methylation-signatures-of-type-2-diabetes-with-links-to-its-complications
#5
JOURNAL ARTICLE
Colette Christiansen, Louis Potier, Tiphaine C Martin, Sergio Villicaña, Juan E Castillo-Fernandez, Massimo Mangino, Cristina Menni, Pei-Chien Tsai, Purdey J Campbell, Shelby Mullin, Juan R Ordoñana, Olga Monteagudo, Perminder S Sachdev, Karen A Mather, Julian N Trollor, Kirsi H Pietilainen, Miina Ollikainen, Christine Dalgård, Kirsten Kyvik, Kaare Christensen, Jenny van Dongen, Gonneke Willemsen, Dorret I Boomsma, Patrik K E Magnusson, Nancy L Pedersen, Scott G Wilson, Elin Grundberg, Tim D Spector, Jordana T Bell
BACKGROUND: Type 2 diabetes (T2D) susceptibility is influenced by genetic and environmental factors. Previous findings suggest DNA methylation as a potential mechanism in T2D pathogenesis and progression. METHODS: We profiled DNA methylation in 248 blood samples from participants of European ancestry from 7 twin cohorts using a methylation sequencing platform targeting regulatory genomic regions encompassing 2,048,698 CpG sites. FINDINGS: We find and replicate 3 previously unreported T2D differentially methylated CpG positions (T2D-DMPs) at FDR 5% in RGL3, NGB and OTX2, and 20 signals at FDR 25%, of which 14 replicated...
April 3, 2024: EBioMedicine
https://read.qxmd.com/read/38550565/therapeutic-value-of-homeoprotein-signaling-pathways
#6
REVIEW
Ariel A Di Nardo, Alain Prochiantz
Cell signaling based on homeoprotein transfer is a pathway with developmental and physiological functions. For a few transcription factors of this family, primarily ENGRAILED1, ENGRAILED2 and OTX2, their physiological functions have led to therapeutic strategies in animal models of human diseases, including Parkinson's disease, amyotrophic lateral sclerosis, amblyopia and anxiety-related disorders. In mesencephalic dopaminergic neurons which degenerate in Parkinson's disease, ENGRAILED1/2 have cell autonomous activities, but their transducing properties enables their use as therapeutic proteins...
2024: Frontiers in Neuroscience
https://read.qxmd.com/read/38511985/mir96-has-good-potential-to-differentiate-human-bone-marrow-derived-mesenchymal-stem-cells-into-photoreceptor-like-cells
#7
JOURNAL ARTICLE
Mohammad-Reza Mahmoudian-Sani, Najmeh Fattahi, Morteza Hashemzadeh Chaleshtori, Samira Asgharzade
OBJECTIVES: MicroRNAs play an important role in the development and function of neuron cells. Among these, the miRNA known as MIR96 is abundantly expressed in mammalian retina and significantly affects differentiation, maturation, and survival of human photoreceptor cells. In this study, a mimic to miRNA-96 was transfected into human bone marrowderived mesenchymal stem cells to explore the biological functions of MIR96 at differentiation processing. MATERIALS AND METHODS: A mimic to miRNA-96 and a competitive control were transfected into human bone marrow-derived mesenchymal stem cells using Lipofectamine...
February 2024: Experimental and Clinical Transplantation
https://read.qxmd.com/read/38511879/14q22-3-duplication-including-otx2-in-a-girl-with-medulloblastoma-a-case-report-with-literature-review
#8
Claire Blake, Kimmie Widmeyer, Kristen DAquila, Aaron Mochizuki, Teresa A Smolarek, Natasha Pillay-Smiley, Sun Young Kim
Orthodenticle homeobox 2 (OTX2) is a known oncogenic driver of medulloblastoma. Germline duplication of 14q22.3 including OTX2 is a rare condition reported in patients with combined pituitary hormone deficiency, oculo-auriculo-vertebral spectrum, and hemifacial microsomia. There has been one previously published case of a patient carrying a 14q22.3 duplication that included OTX2 with hemifacial microsomia who also developed medulloblastoma. Here, we present a case of a 6-year-old girl with a history of delayed development who was diagnosed with medulloblastoma...
March 21, 2024: American Journal of Medical Genetics. Part A
https://read.qxmd.com/read/38509250/different-types-of-pluripotent-stem-cells-represent-different-developmental-stages
#9
JOURNAL ARTICLE
Hisato Kondoh
Pluripotent stem cell lines established from early-stage embryos of mammals or other species represent the embryonic stages before the initiation of somatic development. In these stem cell lines, cell proliferation capacity is maintained while developmental progression is arrested at a specific developmental stage that is determined by the combination of culture conditions, cell state, and species. All of these pluripotent stem cell lines express the transcription factors (TFs) Sox2 and Pou5f1 (Oct3/4); hence, these TFs are often regarded as pluripotency factors...
2024: Results and Problems in Cell Differentiation
https://read.qxmd.com/read/38408234/chd7-and-sox2-act-in-a-common-gene-regulatory-network-during-mammalian-semicircular-canal-and-cochlear-development
#10
JOURNAL ARTICLE
Jingxia Gao, Jennifer M Skidmore, Jelka Cimerman, K Elaine Ritter, Jingyun Qiu, Lindsey M Q Wilson, Yehoash Raphael, Kelvin Y Kwan, Donna M Martin
Inner ear morphogenesis requires tightly regulated epigenetic and transcriptional control of gene expression. CHD7, an ATP-dependent chromodomain helicase DNA-binding protein, and SOX2, an SRY-related HMG box pioneer transcription factor, are known to contribute to vestibular and auditory system development, but their genetic interactions in the ear have not been explored. Here, we analyzed inner ear development and the transcriptional regulatory landscapes in mice with variable dosages of Chd7 and/or Sox2 ...
March 5, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38322115/digging-out-mdig-from-the-mess-of-h3k9me3-otx2-and-myc-signaling-in-human-cancers
#11
EDITORIAL
Ziwei Wang, Chitra Thakur, Akimasa Seno, Fei Chen
No abstract text is available yet for this article.
2024: International Journal of Biological Sciences
https://read.qxmd.com/read/38255964/mechanical-tensions-regulate-gene-expression-in-the-xenopus-laevis-axial-tissues
#12
JOURNAL ARTICLE
Fedor M Eroshkin, Elena A Fefelova, Denis V Bredov, Eugeny E Orlov, Nataliya M Kolyupanova, Alexander M Mazur, Alexey S Sokolov, Nadezhda A Zhigalova, Egor B Prokhortchouk, Alexey M Nesterenko, Andrey G Zaraisky
During gastrulation and neurulation, the chordamesoderm and overlying neuroectoderm of vertebrate embryos converge under the control of a specific genetic programme to the dorsal midline, simultaneously extending along it. However, whether mechanical tensions resulting from these morphogenetic movements play a role in long-range feedback signaling that in turn regulates gene expression in the chordamesoderm and neuroectoderm is unclear. In the present work, by using a model of artificially stretched explants of Xenopus midgastrula embryos and full-transcriptome sequencing, we identified genes with altered expression in response to external mechanical stretching...
January 10, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38249203/an-orthodenticle-homeobox-2-otx2-mutation-in-a-patient-with-combined-pituitary-hormone-deficiency-pituitary-malformation-and-retinitis-pigmentosa
#13
Cátia Araújo, Carla Baptista, Isabel Paiva
Heterozygous mutations of orthodenticle homeobox 2 ( OTX2 )can result in ocular malformations, pituitary abnormalities, or hypopituitarism spanning from isolated growth hormone (GH) deficiency to combined pituitary hormone deficiency. We present a patient exhibiting growth and pubertal disturbances, developmental delay, and pigmentary retinopathy. Further examination revealed deficiencies in GH following clonidine stimulation, hypogonadism, and, subsequently, central hypothyroidism. Brain magnetic resonance imaging uncovered hypoplasia of the pituitary and an ectopic pituitary tissue...
December 2023: Curēus
https://read.qxmd.com/read/38171475/induction-of-human-esc-derived-and-adult-primary-multipotent-limbal-stem-cells-into-retinal-pigment-epithelial-cells-and-corneal-stromal-stem-cells
#14
JOURNAL ARTICLE
Juan Yang, Meiyu Tian, Jinyang Li, Yu Chen, Shichao Lin, Xiaoyin Ma, Wei Chen, Ling Hou
Human embryonic stem cell (hESC)- and human induced pluripotent stem cell (hiPSC)-derived retinal pigment epithelium (RPE) therapies are promising alternatives for the treatment of retinal degenerative diseases caused by RPE degeneration. The generation of autologous RPE cells from human adult donors, which has the advantage of avoiding immune rejection and teratoma formation, is an alternative cell resource to gain mechanistic insight into and test potential therapies for RPE degenerative diseases. Here, we found that limbal stem cells (LSCs) from hESCs and adult primary human limbus have the potential to produce RPE cells and corneal stromal stem cells (CSSCs)...
January 1, 2024: Experimental Eye Research
https://read.qxmd.com/read/38145853/central-role-of-the-habenulo-interpeduncular-system-in-the-neurodevelopmental-basis-of-susceptibility-and-resilience-to-anxiety-in-mice
#15
JOURNAL ARTICLE
Malalaniaina Rakotobe, Niels Fjerdingstad, Nuria Ruiz-Reig, Thomas Lamonerie, Fabien D'Autréaux
Having experienced stress during sensitive periods of brain development strongly influences how individuals cope with later stress. Some are prone to develop anxiety or depression, while others appear resilient. The as-yet-unknown mechanisms underlying these differences may lie in how genes and environmental stress interact to shape the circuits that control emotions. Here, we investigated the role of the habenulo-interpeduncular system (HIPS), a critical node in reward circuits, in early stress-induced anxiety in mice...
February 2024: Neurobiology of Disease
https://read.qxmd.com/read/38141539/thyroid-hormones-mediate-the-impact-of-early-life-stress-on-ventral-tegmental-area-gene-expression-and-behavior
#16
JOURNAL ARTICLE
Shannon N Bennett, Austin B Chang, Forrest D Rogers, Parker Jones, Catherine Jensen Peña
Proper thyroid function is essential to the developing brain, including dopamine neuron differentiation, growth, and maintenance. Stress across the lifespan impacts thyroid hormone signaling and anxiety disorders and depression have been associated with thyroid dysfunction (both hypo- and hyper-active). However, less is known about how stress during postnatal development impacts thyroid function and related brain development. Our previous work in mice demonstrated that early-life stress (ELS) transiently impinged on expression of a transcription factor in dopamine neurons, Otx2, shown to be regulated by thyroid hormones...
December 22, 2023: Hormones and Behavior
https://read.qxmd.com/read/38109998/head-organizer-cerberus-and-igf-cooperate-in-brain-induction-in-xenopus-embryos
#17
JOURNAL ARTICLE
Yagmur Azbazdar, Edgar M Pera, Edward M De Robertis
Neural induction by cell-cell signaling was discovered a century ago by the organizer transplantations of Spemann and Mangold in amphibians. Spemann later found that early dorsal blastopore lips induced heads and late organizers trunk-tail structures. Identifying region-specific organizer signals has been a driving force in the progress of animal biology. Head induction in the absence of trunk is designated archencephalic differentiation. Two specific head inducers, Cerberus and Insulin-like growth factors (IGFs), that induce archencephalic brain but not trunk-tail structures have been described previously...
December 16, 2023: Cells & development
https://read.qxmd.com/read/38052228/hypoblast-from-human-pluripotent-stem-cells-regulates-epiblast-development
#18
JOURNAL ARTICLE
Takumi Okubo, Nicolas Rivron, Mio Kabata, Hideki Masaki, Keiko Kishimoto, Katsunori Semi, May Nakajima-Koyama, Haruko Kunitomi, Belinda Kaswandy, Hideyuki Sato, Hiromitsu Nakauchi, Knut Woltjen, Mitinori Saitou, Erika Sasaki, Takuya Yamamoto, Yasuhiro Takashima
Recently, several studies using cultures of human embryos together with single-cell RNA-seq (scRNA-seq) analyses have revealed differences between humans and mice, necessitating the study of human embryos 1-8 . Despite the importance of human embryology, ethical and legal restrictions have limited post-implantation stage studies. Thus, recent efforts have focused on developing in vitro self-organising models using human stem cells 9-17 . Here, we report genetic and non-genetic approaches to generate authentic hypoblast cells (nHyC)-known to give rise to one of the two extraembryonic tissues essential for embryonic development-from naïve human pluripotent stem cells (hPSCs)...
December 5, 2023: Nature
https://read.qxmd.com/read/38026167/-o-glcnacylation-regulates-otx2-s-proteostasis
#19
JOURNAL ARTICLE
Eugenia Wulff-Fuentes, Jeffrey Boakye, Kaeley Kroenke, Rex R Berendt, Carla Martinez-Morant, Michaela Pereckas, John A Hanover, Stephanie Olivier-Van Stichelen
O -GlcNAcylation is a key post-translational modification, playing a vital role in cell signaling during development, especially in the brain. In this study, we investigated the role of O -GlcNAcylation in regulating the homeobox protein OTX2, which contributes to various brain disorders, such as combined pituitary hormone deficiency, retinopathy, and medulloblastoma. Our research demonstrated that, under normal physiological conditions, the proteasome plays a pivotal role in breaking down endogenous OTX2. However, when the levels of OTX2 rise, it forms oligomers and/or aggregates that require macroautophagy for clearance...
November 17, 2023: IScience
https://read.qxmd.com/read/37980029/perfluorinated-iodine-alkanes-promote-the-differentiation-of-mouse-embryonic-stem-cells-by-regulating-estrogen-receptor-signaling
#20
JOURNAL ARTICLE
Zhihua Ren, Xiaoxi Yang, Tingting Ku, Qian S Liu, Jiefeng Liang, Qunfang Zhou, Francesco Faiola, Guibin Jiang
Investigating the development toxicity of perfluorinated iodine alkanes (PFIs) is critical, given their estrogenic effects through binding with estrogen receptors (ERs). In the present study, two PFIs, including dodecafluoro-1,6-diiodohexane (PFHxDI) and tridecafluorohexyl iodide (PFHxI), with binding preference to ERα and ERβ, respectively, were selected to evaluate their effects on proliferation and differentiation of the mouse embryonic stem cells (mESCs). The results revealed that, similar to E2 , 50 µmol/L PFHxDI accelerated the cell proliferation of the mESCs...
March 2024: Journal of Environmental Sciences (China)
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