keyword
https://read.qxmd.com/read/38632224/engineering-a-synthetic-gene-circuit-for-high-performance-inducible-expression-in-mammalian-systems
#1
JOURNAL ARTICLE
Giuliano De Carluccio, Virginia Fusco, Diego di Bernardo
Inducible gene expression systems can be used to control the expression of a gene of interest by means of a small-molecule. One of the most common designs involves engineering a small-molecule responsive transcription factor (TF) and its cognate promoter, which often results in a compromise between minimal uninduced background expression (leakiness) and maximal induced expression. Here, we focus on an alternative strategy using quantitative synthetic biology to mitigate leakiness while maintaining high expression, without modifying neither the TF nor the promoter...
April 17, 2024: Nature Communications
https://read.qxmd.com/read/38627830/glut1-mediated-microglial-proinflammatory-activation-contributes-to-the-development-of-stress-induced-spatial-learning-and-memory-dysfunction-in-mice
#2
JOURNAL ARTICLE
Xue Wang, Yuhan Wu, Yingrui Tian, Hui Hu, Yun Zhao, Binghua Xue, Zhaowei Sun, Aijun Wei, Fang Xie, Ling-Jia Qian
BACKGROUND: Stress is a recognized risk factor for cognitive decline, which triggers neuroinflammation involving microglial activation. However, the specific mechanism for microglial activation under stress and affects learning and memory remains unclear. METHODS: The chronic stress mouse model was utilized to explore the relationship between microglial activation and spatial memory impairment. The effect of hippocampal hyperglycemia on microglial activation was evaluated through hippocampal glucose-infusion and the incubation of BV2 cells with high glucose...
April 16, 2024: Cell & Bioscience
https://read.qxmd.com/read/38627359/aav-mediated-upregulation-of-vdac1-rescues-the-mitochondrial-respiration-and-sirtuins-expression-in-a-sod1-mouse-model-of-inherited-als
#3
JOURNAL ARTICLE
Andrea Magrì, Cristiana Lucia Rita Lipari, Antonella Caccamo, Giuseppe Battiato, Stefano Conti Nibali, Vito De Pinto, Francesca Guarino, Angela Messina
Mitochondrial dysfunction represents one of the most common molecular hallmarks of both sporadic and familial forms of amyotrophic lateral sclerosis (ALS), a neurodegenerative disorder caused by the selective degeneration and death of motor neurons. The accumulation of misfolded proteins on and within mitochondria, as observed for SOD1 G93A mutant, correlates with a drastic reduction of mitochondrial respiration and the inhibition of metabolites exchanges, including ADP/ATP and NAD+ /NADH, across the Voltage-Dependent Anion-selective Channel 1 (VDAC1), the most abundant channel protein of the outer mitochondrial membrane...
April 16, 2024: Cell Death Discovery
https://read.qxmd.com/read/38614227/txnip-knockdown-protects-rats-against-bupivacaine-induced-spinal-neurotoxicity-via-the-inhibition-of-oxidative-stress-and-apoptosis
#4
JOURNAL ARTICLE
Yang Zhao, Yuanyuan Chen, Ziru Liu, Lei Zhou, Jiao Huang, Xi Luo, Yunpeng Luo, Jia Li, Yunan Lin, Jian Lai, Jingchen Liu
Bupivacaine (BUP) is an anesthetic commonly used in clinical practice that when used for spinal anesthesia, might exert neurotoxic effects. Thioredoxin-interacting protein (TXNIP) is a member of the α-arrestin protein superfamily that binds covalently to thioredoxin (TRX) to inhibit its function, leading to increased oxidative stress and activation of apoptosis. The role of TXNIP in BUP-induced oxidative stress and apoptosis remains to be elucidated. In this context, the present study aimed to explore the effects of TXNIP knockdown on BUP-induced oxidative stress and apoptosis in the spinal cord of rats and in PC12 cells through the transfection of adeno-associated virus-TXNIP short hairpin RNA (AAV-TXNIP shRNA) and siRNA-TXNIP, respectively...
April 11, 2024: Free Radical Biology & Medicine
https://read.qxmd.com/read/38608728/utility-of-protein-protein-binding-surfaces-composed-of-anti-parallel-alpha-helices-and-beta-sheets-selected-by-phage-display
#5
JOURNAL ARTICLE
Ningyu Zhu, Philip M Smallwood, Amir Rattner, John Williams, Yanshu Wang, Jeremy Nathans
Over the past three decades a diverse collection of small protein domains have been used as scaffolds to generate general-purpose protein-binding reagents using a variety of protein display and enrichment technologies. To expand the repertoire of scaffolds and protein surfaces that might serve this purpose, we have explored the utility of (i) a pair of anti-parallel alpha-helices in a small highly disulfide-bonded 4-helix bundle, the CC4 domain from Reversion-inducing Cysteine-rich Protein with Kazal Motifs (RECK), and (ii) a concave beta-sheet surface and two adjacent loops in the human FN3 domain, the scaffold for the widely used monobody platform...
April 11, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38606951/hepatitis-after-gene-therapy-what-are-the-possible-causes
#6
REVIEW
Ann Maina, Graham R Foster
Hepatitis is a common adverse event following gene therapy for haemophilia, often associated with a loss of transgene expression. Investigating the potential causes and implications of this is crucial for the overall success of treatment. Gene therapy trials using adeno-associated virus (AAV) vectors have demonstrated promising results marked by increases in factor FVIII and FIX levels and reductions in episodes of bleeding. However, hepatocellular injury characterised by elevations in alanine aminotransferases (ALT) has been noted...
April 2024: Journal of Viral Hepatitis
https://read.qxmd.com/read/38606938/the-complex-confusing-and-poorly-understood-immune-responses-to-aav-mediated-gene-transfer-in-haemophilia-is-more-or-less-immunosuppression-required
#7
REVIEW
Edward G D Tuddenham, Graham R Foster
Attempts to achieve a functional cure or amelioration of the severe X linked bleeding disorders haemophilia A (factor VIII deficiency) and haemophilia B (factor IX deficiency) using AAV-based vectors have been frustrated by immune responses that limit efficacy and durability. The immune responses include adaptive and innate pathways as well as cytokine mediated inflammation, especially of the target organ cells-hepatocytes. Immune suppression has only been partly effective in clinical trials at ameliorating the immune response and the lack of good animal models has delayed progress in identifying mechanisms and developing more effective approaches to controlling these effects of AAV gene transfer...
April 2024: Journal of Viral Hepatitis
https://read.qxmd.com/read/38605812/development-of-adenoviral-vectors-that-transduce-purkinje-cells-and-other-cerebellar-cell-types-in-the-cerebellum-of-a-humanized-mouse-model
#8
JOURNAL ARTICLE
Emre Kul, Uchechi Okoroafor, Amanda Dougherty, Lauren Palkovic, Hao Li, Paula Valiño-Ramos, Leah Aberman, Samuel M Young
Viral vector gene therapy has immense promise for treating central nervous system (CNS) disorders. Although adeno-associated virus vectors (AAVs) have had success, their small packaging capacity limits their utility to treat the root cause of many CNS disorders. Adenoviral vectors (Ad) have tremendous potential for CNS gene therapy approaches. Currently, the most common vectors utilize the Group C Ad5 serotype capsid proteins, which rely on the Coxsackievirus-Adenovirus receptor (CAR) to infect cells. However, these Ad5 vectors are unable to transduce many neuronal cell types that are dysfunctional in many CNS disorders...
June 13, 2024: Molecular Therapy. Methods & Clinical Development
https://read.qxmd.com/read/38602002/ctnnal1-promotes-the-structural-integrity-of-bronchial-epithelial-cells-through-the-rhoa-rock1-pathway
#9
JOURNAL ARTICLE
Caixia Liu, Jinmei Wang, Yurong Tan, Chi Liu, Xiangping Qu, Huijun Liu, Meiling Tan, Changqing Deng, Xiaoqun Qin, Yang Xiang
Adhesion molecules play critical roles in maintaining the structural integrity of the airway epithelium in airways under stress. Previously, we reported that catenin alpha-like 1 (CTNNAL1) is downregulated in an asthma animal model and upregulated at the edge of human bronchial epithelial cells (HBECs) after ozone stress. In this work, we explore the potential role of CTNNAL1 in the structural adhesion of HBECs and its possible mechanism. We construct a CTNNAL1 ‒/‒ mouse model with CTNNAL1-RNAi recombinant adeno-associated virus (AAV) in the lung and a CTNNAL1 -silencing cell line stably transfected with CTNNAL1-siRNA recombinant plasmids...
April 11, 2024: Acta Biochimica et Biophysica Sinica
https://read.qxmd.com/read/38601361/effects-of-autotaxin-and-lysophosphatidic-acid-deficiencies-on-depression-like-behaviors-in-mice-exposed-to-chronic-unpredictable-mild-stress
#10
JOURNAL ARTICLE
Chao Wang, Ningyuan Li, Yuqi Feng, Siqi Sun, Jingtong Rong, Xin-Hui Xie, Shuxian Xu, Zhongchun Liu
The involvement of lipids in the mechanism of depression has triggered extensive discussions. Earlier studies have identified diminished levels of lysophosphatidic acid (LPA) and autotaxin (ATX) in individuals experiencing depression. However, the exact significance of this phenomenon in relation to depression remains inconclusive. This study seeks to explore the deeper implications of these observations. We assessed alterations in ATX and LPA in both the control group and the chronic unpredictable mild stress (CUMS) model group...
May 2024: Neurobiology of Stress
https://read.qxmd.com/read/38594244/the-requirement-of-the-mitochondrial-protein-ndufs8-for-angiogenesis
#11
JOURNAL ARTICLE
Qian-Wei Xiong, Kun Jiang, Xiao-Wei Shen, Zhou-Rui Ma, Xiang-Ming Yan, Hao Xia, Xu Cao
Mitochondria are important for the activation of endothelial cells and the process of angiogenesis. NDUFS8 (NADH:ubiquinone oxidoreductase core subunit S8) is a protein that plays a critical role in the function of mitochondrial Complex I. We aimed to investigate the potential involvement of NDUFS8 in angiogenesis. In human umbilical vein endothelial cells (HUVECs) and other endothelial cell types, we employed viral shRNA to silence NDUFS8 or employed the CRISPR/Cas9 method to knockout (KO) it, resulting in impaired mitochondrial functions in the endothelial cells, causing reduction in mitochondrial oxygen consumption and Complex I activity, decreased ATP production, mitochondrial depolarization, increased oxidative stress and reactive oxygen species (ROS) production, and enhanced lipid oxidation...
April 9, 2024: Cell Death & Disease
https://read.qxmd.com/read/38589400/thrombomodulin-reduces-%C3%AE-synuclein-generation-and-ameliorates-neuropathology-in-a-mouse-model-of-parkinson-s-disease
#12
JOURNAL ARTICLE
Xiao-Yun Niu, Xi-Xiu Xie, Hou-Zhen Tuo, Cui-Ping Lv, Ya-Ru Huang, Jie Zhu, Shi-Yu Liang, Xiao-Yu Du, Cheng-Gang Yang, Sheng-Jie Hou, Xiao-Ying Sun, Ling-Jie Li, Fang Cui, Qi-Xin Huang, Ying-Bo Jia, Yu-Jiong Wang, Rui-Tian Liu
The neurotoxic α-synuclein (α-syn) oligomers play an important role in the occurrence and development of Parkinson's disease (PD), but the factors affecting α-syn generation and neurotoxicity remain unclear. We here first found that thrombomodulin (TM) significantly decreased in the plasma of PD patients and brains of A53T α-syn mice, and the increased TM in primary neurons reduced α-syn generation by inhibiting transcription factor p-c-jun production through Erk1/2 signaling pathway...
April 8, 2024: Cell Death Discovery
https://read.qxmd.com/read/38587806/dach1-attenuates-airway-inflammation-in-copd-by-activating-nrf2-signaling
#13
JOURNAL ARTICLE
Qian Huang, Yiya Gu, Jixing Wu, Yuan Zhan, Zhesong Deng, Shanshan Chen, Maocuo Peng, Ruonan Yang, Jinkun Chen, Jungang Xie
Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory disease of the airways, it is characterized by impaired lung function induced by cigarette smoke (CS). Reduced DACH1 expression has a detrimental role in numerous disorders. However, its role in COPD remains understudied. This study aims to elucidate the role and underlying mechanism of DACH1 in airway inflammation of COPD. DACH1 expression was measured in lung tissues of patients with COPD. Airway epithelium-specific DACH1 knockdown mice and AAV-transfected DACH1 overexpressed mice were used to investigate its role and potential for therapeutic targeting in experimental COPD caused by CS...
April 8, 2024: American Journal of Respiratory Cell and Molecular Biology
https://read.qxmd.com/read/38585985/unlocking-precision-gene-therapy-harnessing-aav-tropism-with-nanobody-swapping-at-capsid-hotspots
#14
Mareike D Hoffmann, Joseph P Gallant, Aaron M LeBeau, Daniel Schmidt
Adeno-associated virus has been remarkably successful in the clinic, but its broad tropism is a practical limitation of precision gene therapy. A promising path to engineer AAV tropism is the addition of binding domains to the AAV capsid that recognize cell surface markers present on a targeted cell type. We have recently identified two previously unexplored capsid regions near the 2-fold valley and 5-fold pore of the AAV capsid that are amenable to insertion of larger protein domains including nanobodies. Here, we demonstrate that these hotspots facilitate AAV tropism switching through simple nanobody replacement without extensive optimization in both VP1 and VP2...
March 27, 2024: bioRxiv
https://read.qxmd.com/read/38585739/an-innovative-mitochondrial-targeted-gene-therapy-for-cancer-treatment
#15
Kai Chen, Patrick Ernst, Seulhee Kim, Yingnan Si, Tanvi Varadkar, Matthew D Ringel, Xiaoguang Margaret Liu, Lufang Zhou
Targeting cancer cell mitochondria holds great therapeutic promise, yet current strategies to specifically and effectively destroy cancer mitochondria in vivo are limited. Here, we introduce mLumiOpto, an innovative mitochondrial-targeted luminoptogenetics gene therapy designed to directly disrupt the inner mitochondrial membrane (IMM) potential and induce cancer cell death. We synthesize a blue light-gated channelrhodopsin (CoChR) in the IMM and co-express a blue bioluminescence-emitting Nanoluciferase (NLuc) in the cytosol of the same cells...
March 27, 2024: bioRxiv
https://read.qxmd.com/read/38584513/gdf5-as-a-rejuvenating-treatment-for-age-related-neuromuscular-failure
#16
JOURNAL ARTICLE
Traoré Massiré, Noviello Chiara, Vergnol Amélie, Gentil Christel, Halliez Marius, Saillard Lucile, Gelin Maxime, Forand Anne, Lemaitre Mégane, Guesmia Zoheir, Cadot Bruno, Caldas Eriky, Marty Benjamin, Mougenot Nathalie, Messéant Julien, Strochlic Laure, Sadoine Jeremy, Slimani Lofti, Jolly Ariane, De la Grange Pierre, Hogrel Jean-Yves, Pietri-Rouxel France, Falcone Sestina
Sarcopenia involves a progressive loss of skeletal muscle force, quality and mass during ageing, which results in increased inability and death; however, no cure has been established thus far. Growth differentiation factor 5 (GDF5) has been described to modulate muscle mass maintenance in various contexts. For our proof of concept, we overexpressed GDF5 by AAV vector injection in Tibialis Anterior (TA) muscle of adult aged (20 months) mice and performed molecular and functional analysis of skeletal muscle. We analysed human Vastus Lateralis muscle biopsies from adult young (21-42 years) and aged (77-80 years) donors, quantifying the molecular markers modified by GDF5 overexpression (OE) in mouse muscle...
April 8, 2024: Brain
https://read.qxmd.com/read/38582513/genome-editing-vegfa-prevents-corneal-neovascularization-in-vivo
#17
JOURNAL ARTICLE
Zhenhai Zeng, Siheng Li, Xiuhong Ye, Yiran Wang, Qinmei Wang, Zhongxing Chen, Ziqian Wang, Jun Zhang, Qing Wang, Lu Chen, Shuangzhe Zhang, Zhilin Zou, Meimin Lin, Xinyi Chen, Guoli Zhao, Colm McAlinden, Hetian Lei, Xingtao Zhou, Jinhai Huang
Corneal neovascularization (CNV) is a common clinical finding seen in a range of eye diseases. Current therapeutic approaches to treat corneal angiogenesis, in which vascular endothelial growth factor (VEGF) A plays a central role, can cause a variety of adverse side effects. The technology of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 can edit VEGFA gene to suppress its expression. CRISPR offers a novel opportunity to treat CNV. This study shows that depletion of VEGFA with a novel CRISPR/Cas9 system inhibits proliferation, migration, and tube formation of human umbilical vein endothelial cells (HUVECs) in vitro...
April 6, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38569295/maijitong-granule-attenuates-atherosclerosis-by-reducing-ferroptosis-via-activating-stat6-mediated-inhibition-of-dmt1-and-socs1-p53-pathways-in-ldlr-mice
#18
JOURNAL ARTICLE
Jia Shi, Ming Ming Yang, Shu Yang, Fangyang Fan, Guobin Zheng, Yaodong Miao, Yunqing Hua, Jing Zhang, Yanfei Cheng, Shangjing Liu, Yuying Guo, Liping Guo, Xiaoxiao Yang, Guanwei Fan, Chuanrui Ma
BACKGROUND AND PURPOSE: Atherosclerosis is the primary pathological basis of cardiovascular disease. Ferroptosis is a regulated form of cell death, a process of lipid peroxidation driven by iron, which can initiate and promote atherosclerosis. STAT6 is a signal transducer that shows a potential role in regulating ferroptosis, but, the exact role in ferroptosis during atherogenesis remains unclear. The Traditional Chinese Medicine Maijitong granule (MJT) is used for treating cardiovascular disease and shows a potential inhibitory effect on ferroptosis...
March 10, 2024: Phytomedicine
https://read.qxmd.com/read/38564479/lactate-transporter-mct1-in-hepatic-stellate-cells-promotes-fibrotic-collagen-expression-in-nonalcoholic-steatohepatitis
#19
JOURNAL ARTICLE
Kyounghee Min, Batuhan Yenilmez, Mark Kelly, Dimas Echeverria, Michael Elleby, Lawrence M Lifshitz, Naideline Raymond, Emmanouela Tsagkaraki, Shauna M Harney, Chloe DiMarzio, Hui Wang, Nicholas McHugh, Brianna Bramato, Brett Morrison, Jeffery D Rothstein, Anastasia Khvorova, Michael P Czech
Circulating lactate is a fuel source for liver metabolism but may exacerbate metabolic diseases such as nonalcoholic steatohepatitis (NASH). Indeed, haploinsufficiency of lactate transporter monocarboxylate transporter 1 (MCT1) in mice reportedly promotes resistance to hepatic steatosis and inflammation. Here, we used adeno-associated virus (AAV) vectors to deliver thyroxin binding globulin (TBG)-Cre or lecithin-retinol acyltransferase (Lrat)-Cre to MCT1fl/fl mice on a choline-deficient, high-fat NASH diet to deplete hepatocyte or stellate cell MCT1, respectively...
April 2, 2024: ELife
https://read.qxmd.com/read/38559034/synthetic-dosage-compensating-mirna-circuits-for-quantitative-gene-therapy
#20
Michael James Flynn, Acacia M Mayfield, Rongrong Du, Viviana Gradinaru, Michael B Elowitz
A longstanding challenge in gene therapy is expressing a dosage-sensitive gene within a tight therapeutic window. For example, loss of MECP2 function causes Rett syndrome, while its duplication causes MECP2 duplication syndrome. Viral gene delivery methods generate variable numbers of gene copies in individual cells, creating a need for gene dosage-invariant expression systems. Here, we introduce a compact miRNA-based, incoherent feed-forward loop circuit that achieves precise control of Mecp2 expression in cells and brains, and improves outcomes in an AAV-based mouse model of Rett syndrome gene therapy...
March 14, 2024: bioRxiv
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