keyword
https://read.qxmd.com/read/37873361/joint-sequence-chromatin-neural-networks-characterize-the-differential-abilities-of-forkhead-transcription-factors-to-engage-inaccessible-chromatin
#21
Sonny Arora, Jianyu Yang, Tomohiko Akiyama, Daniela James, Alexis Morrissey, Thomas R Blanda, Nitika Badjatia, William K M Lai, Minoru S H Ko, B Franklin Pugh, Shaun Mahony
The DNA-binding activities of transcription factors (TFs) are influenced by both intrinsic sequence preferences and extrinsic interactions with cell-specific chromatin landscapes and other regulatory proteins. Disentangling the roles of these determinants in TF-DNA binding remains challenging. For instance, the FoxA subfamily of Forkhead domain (Fox) TFs are known pioneer factors, yet their binding varies across cell types, pointing to a combination of intrinsic and extrinsic forces guiding their binding. How such sequence and chromatin influences vary across related Fox TFs remains mostly uncharacterized...
October 9, 2023: bioRxiv
https://read.qxmd.com/read/37833681/top-caregiver-concerns-in-rett-syndrome-and-related-disorders-data-from-the-us-natural-history-study
#22
JOURNAL ARTICLE
Jeffrey L Neul, Timothy A Benke, Eric D Marsh, Bernhard Suter, Lori Silveira, Cary Fu, Sarika U Peters, Alan K Percy
OBJECTIVE: Recent advances in the understanding of neurodevelopmental disorders such as Rett syndrome (RTT) have enabled the discovery of novel therapeutic approaches that require formal clinical evaluation of efficacy. Clinical trial success depends on outcome measures that assess clinical features that are most impactful for affected individuals. To determine the top concerns in RTT and RTT-related disorders we asked caregivers to list the top caregiver concerns to guide the development and selection of appropriate clinical trial outcome measures for these disorders...
October 13, 2023: Journal of Neurodevelopmental Disorders
https://read.qxmd.com/read/37809713/foxg1-regulates-the-proliferation-and-apoptosis-of-human-lung-cancer-cells
#23
JOURNAL ARTICLE
Yan Chen, Yuqing Wang, Caiting Yang, Xiaoting Zhang, Yongxin Liu, Genyuan Pu, Huijie Jiang, Yun Pan, Zhenjin Li, Mingming Lai
FOXG1, a transcriptional factor belonging to the Forkhead Box (Fox) superfamily, is highly expressed in the brain tissue during brain development and plays an important role in cellular proliferation. Recently, FOXG1 was reported to play important roles in oncogenesis, wherein its abnormal expression regulates tumor cell proliferation. However, the expression and role of FOXG1 in lung cancer remain largely unknown. This study investigated the clinical significance, expression, and role of FOXG1 in lung cancer...
September 2023: Heliyon
https://read.qxmd.com/read/37790302/massively-parallel-in-vivo-perturb-seq-reveals-cell-type-specific-transcriptional-networks-in-cortical-development
#24
Xinhe Zheng, Boli Wu, Yuejia Liu, Sean K Simmons, Kwanho Kim, Grace S Clarke, Abdullah Ashiq, Joshua Park, Zhilin Wang, Liqi Tong, Qizhao Wang, Xiangmin Xu, Joshua Z Levin, Xin Jin
Systematic analysis of gene function across diverse cell types in vivo is hindered by two challenges: obtaining sufficient cells from live tissues and accurately identifying each cell's perturbation in high-throughput single-cell assays. Leveraging AAV's versatile cell type tropism and high labeling capacity, we expanded the resolution and scale of in vivo CRISPR screens: allowing phenotypic analysis at single-cell resolution across a multitude of cell types in the embryonic brain, adult brain, and peripheral nervous system...
September 18, 2023: bioRxiv
https://read.qxmd.com/read/37762220/conditional-deletion-of-foxg1-delayed-myelination-during-early-postnatal-brain-development
#25
JOURNAL ARTICLE
Guangliang Cao, Congli Sun, Hualin Shen, Dewei Qu, Chuanlu Shen, Haiqin Lu
FOXG1 (forkhead box G1) syndrome is a neurodevelopmental disorder caused by variants in the Foxg1 gene that affect brain structure and function. Individuals affected by FOXG1 syndrome frequently exhibit delayed myelination in neuroimaging studies, which may impair the rapid conduction of nerve impulses. To date, the specific effects of FOXG1 on oligodendrocyte lineage progression and myelination during early postnatal development remain unclear. Here, we investigated the effects of Foxg1 deficiency on myelin development in the mouse brain by conditional deletion of Foxg1 in neural progenitors using NestinCreER;Foxg1fl/fl mice and tamoxifen induction at postnatal day 0 (P0)...
September 10, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37720935/lncrna-associated-competing-endogenous-rna-network-analysis-uncovered-key-lncrnas-involved-in-temozolomide-resistance-and-tumor-recurrence-of-glioblastoma
#26
JOURNAL ARTICLE
Rojalin Nayak, Bibekanand Mallick
Temozolomide (TMZ) is a common alkylating chemotherapeutic agent used to treat brain tumors such as glioblastoma multiforme (GBM) and anaplastic astrocytoma. GBM patients develop resistance to this drug, which has an unclear and complicated molecular mechanism. The competing endogenous RNAs (ceRNAs) play critical roles in tumorigenesis, drug resistance, and tumor recurrence in cancers. This study aims to predict ceRNAs, their possible involvement, and underlying molecular mechanisms in TMZ resistance. Therefore, we analyzed coding and non-coding RNA expression levels in TMZ-resistant GBM samples compared to sensitive GBM samples and performed pathway analysis of mRNAs differentially expressed (DE) in TMZ-resistant samples...
September 18, 2023: Journal of Molecular Recognition: JMR
https://read.qxmd.com/read/37700157/specific-downregulation-of-microrna-186-induces-neural-stem-cell-self-renewal-by-upregulating-bmi-1-foxg1-expression
#27
JOURNAL ARTICLE
Tuantuan Chen, Jing Liu, Yang Liu, Yang Chen, Xue Wang
Self-renewal and differentiation in neural stem cells (NSCs) are modulated by microRNAs (miRNAs). However, the recent evidence available is not enough to elucidate the role of miRNA in the self-renewal and differentiation of NSCs from developing brain. In this study, we isolated primary NSCs from the forebrain of fetal rat for in vitro analysis. Downregulation of miRNA-186 in response to a specific miRNA inhibitor resulted in upregulation of Bmi-1 and FoxG1, while maintaining NCS self-renewal. Bmi-1 overexpression restored the maintenance of NSCs in vitro...
September 12, 2023: Human Cell
https://read.qxmd.com/read/37695031/critical-test-of-the-assumption-that-the-hypothalamic-entopeduncular-nucleus-of-rodents-is-homologous-with-the-primate-internal-pallidum
#28
JOURNAL ARTICLE
Luis Puelles, Thorsten Stühmer, John L R Rubenstein, Carmen Diaz
The globus pallidus (GP) of primates is divided conventionally into distinct internal and external parts. The literature repeats since 1930 the opinion that the homolog of the primate internal pallidum in rodents is the hypothalamic entopeduncular nucleus (embedded within fiber tracts of the cerebral peduncle). To test this idea, we explored its historic fundaments, checked the development and genoarchitecture of mouse entopeduncular and pallidal neurons, and examined relevant comparative connectivity data...
November 2023: Journal of Comparative Neurology
https://read.qxmd.com/read/37566909/dot1l-deletion-impairs-the-development-of-cortical-parvalbumin-expressing-interneurons
#29
JOURNAL ARTICLE
Arquimedes Cheffer, Marta Garcia-Miralles, Esther Maier, Ipek Akol, Henriette Franz, Vandana Shree Vedartham Srinivasan, Tanja Vogel
The cortical plate (CP) is composed of excitatory and inhibitory neurons, the latter of which originate in the ganglionic eminences. From their origin in the ventral telencephalon, maturing postmitotic interneurons migrate during embryonic development over some distance to reach their final destination in the CP. The histone methyltransferase Disruptor of Telomeric Silencing 1-like (DOT1L) is necessary for proper CP development and layer distribution of glutamatergic neurons. However, its specific role on cortical interneuron development has not yet been explored...
August 11, 2023: Cerebral Cortex
https://read.qxmd.com/read/37536505/foxg1-is-involved-in-mouse-ovarian-functions-and-embryogenesis
#30
JOURNAL ARTICLE
Xingyu Yan, Linlin Hou, Cong Zhang
TGF-β superfamily has long been demonstrated to be essential for folliculogenesis and luteinization. Forkhead box G1 (FOXG1, also known as BF1), a member of the FOX family and an inhibitor of TGF-β signaling pathway, is a nucleocytoplasmic transcription factor that is essential for forebrain development. FOXG1 is involved in neurodevelopment and cancer pathology, however, little is known about the role of FOXG1 in reproduction. In this study, the spatiotemporal expression pattern of FOXG1 was examined during early mouse oocyte and embryonic development and its role during corpora luteum (CL) formation was further elucidated...
October 2023: Journal of Steroid Biochemistry and Molecular Biology
https://read.qxmd.com/read/37398410/the-patient-specific-mouse-model-with-foxg1-frameshift-mutation-uncovers-the-pathophysiology-of-foxg1-syndrome
#31
Jaein Park, Ji Hwan Moon, Holly O'Shea, Dongjun Shin, Seon Ung Hwang, Liwen Li, Hyojong Lee, Elise Brimble, Jae Lee, Stewart Clark, Soo-Kyung Lee, Shin Jeon
Single allelic mutations in the gene encoding the forebrain-specific transcription factor FOXG1 lead to FOXG1 syndrome (FS). Patient-specific animal models are needed to understand the etiology of FS, as FS patients show a wide spectrum of symptoms correlated with location and mutation type in the FOXG1 gene. Here we report the first patient-specific FS mouse model, Q84Pfs heterozygous (Q84Pfs-Het) mice, mimicking one of the most predominant single nucleotide variants in FS. Intriguingly, we found that Q84Pfs-Het mice faithfully recapitulate human FS phenotypes at the cellular, brain structural, and behavioral levels...
June 2, 2023: Research Square
https://read.qxmd.com/read/37386481/retraction-note-forkhead-box-fox-g1-promotes-hepatocellular-carcinoma-epithelial-mesenchymal-transition-by-activating-wnt-signal-through-forming-t-cell-factor-4-beta-catenin-foxg1-complex
#32
Xingrong Zheng, Jiaxin Lin, Hewei Wu, Zhishuo Mo, Yunwen Lian, Peipei Wang, Zhaoxia Hu, Zhiliang Gao, Liang Peng, Chan Xie
No abstract text is available yet for this article.
June 29, 2023: Journal of Experimental & Clinical Cancer Research: CR
https://read.qxmd.com/read/37308910/expanding-genotype-phenotype-correlations-in-foxg1-syndrome-results-from-a-patient-registry
#33
JOURNAL ARTICLE
Elise Brimble, Kathryn G Reyes, Kopika Kuhathaas, Orrin Devinsky, Maura R Z Ruzhnikov, Xilma R Ortiz-Gonzalez, Ingrid Scheffer, Nadia Bahi-Buisson, Heather Olson
BACKGROUND: We refine the clinical spectrum of FOXG1 syndrome and expand genotype-phenotype correlations through evaluation of 122 individuals enrolled in an international patient registry. METHODS: The FOXG1 syndrome online patient registry allows for remote collection of caregiver-reported outcomes. Inclusion required documentation of a (likely) pathogenic variant in FOXG1. Caregivers were administered a questionnaire to evaluate clinical severity of core features of FOXG1 syndrome...
June 12, 2023: Orphanet Journal of Rare Diseases
https://read.qxmd.com/read/37255597/a-high-ratio-of-linoleic-acid-n-6-pufa-to-alpha-linolenic-acid-n-3-pufa-adversely-affects-early-stage-of-human-neuronal-differentiation-and-electrophysiological-activity-of-glutamatergic-neurons-in-vitro
#34
JOURNAL ARTICLE
Karolina Dec, Mouhamed Alsaqati, Joanne Morgan, Sumukh Deshpande, Jamie Wood, Jeremy Hall, Adrian J Harwood
Introduction: There is a growing interest in the possibility of dietary supplementation with polyunsaturated fatty acids (PUFAs) for treatment and prevention of neurodevelopmental and neuropsychiatric disorders. Studies have suggested that of the two important classes of polyunsaturated fatty acids, omega-6 (n-6) and omega-3 (n-3), n-3 polyunsaturated fatty acids support brain development and function, and when used as a dietary supplement may have beneficial effects for maintenance of a healthy brain. However, to date epidemiological studies and clinical trials on children and adults have been inconclusive regarding treatment length, dosage and use of specific n-3 polyunsaturated fatty acids...
2023: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/37243590/elevated-foxg1-in-glioblastoma-stem-cells-cooperates-with-wnt-%C3%AE-catenin-to-induce-exit-from-quiescence
#35
JOURNAL ARTICLE
Faye L Robertson, Eoghan O'Duibhir, Ester Gangoso, Raul Bardini Bressan, Harry Bulstrode, Maria-Ángeles Marqués-Torrejón, Kirsty M Ferguson, Carla Blin, Vivien Grant, Neza Alfazema, Gillian M Morrison, Steven M Pollard
Glioblastoma (GBM) stem cells (GSCs) display phenotypic and molecular features reminiscent of normal neural stem cells and exhibit a spectrum of cell cycle states (dormant, quiescent, proliferative). However, mechanisms controlling the transition from quiescence to proliferation in both neural stem cells (NSCs) and GSCs are poorly understood. Elevated expression of the forebrain transcription factor FOXG1 is often observed in GBMs. Here, using small-molecule modulators and genetic perturbations, we identify a synergistic interaction between FOXG1 and Wnt/β-catenin signaling...
May 26, 2023: Cell Reports
https://read.qxmd.com/read/37221543/3d-bioprinting-patient-derived-induced-pluripotent-stem-cell-models-of-alzheimer-s-disease-using-a-smart-bioink
#36
JOURNAL ARTICLE
Claire Benwood, Jonathan Walters-Shumka, Kali Scheck, Stephanie M Willerth
BACKGROUND: Alzheimer's disease (AD), a progressive neurodegenerative disorder, is becoming increasingly prevalent as our population ages. It is characterized by the buildup of amyloid beta plaques and neurofibrillary tangles containing hyperphosphorylated-tau. The current treatments for AD do not prevent the long-term progression of the disease and pre-clinical models often do not accurately represent its complexity. Bioprinting combines cells and biomaterials to create 3D structures that replicate the native tissue environment and can be used as a tool in disease modeling or drug screening...
May 24, 2023: Bioelectronic Medicine
https://read.qxmd.com/read/37216650/foxg1-targets-bmp-repressors-and-cell-cycle-inhibitors-in-human-neural-progenitor-cells
#37
JOURNAL ARTICLE
Nuwan C Hettige, Peter Fleming, Amelia Semenak, Xin Zhang, Huashan Peng, Marc-Daniel Hagel, Jean-François Théroux, Ying Zhang, Anjie Ni, Malvin Jefri, Lilit Antonyan, Shaima Alsuwaidi, Andreas Schuppert, Patrick S Stumpf, Carl Ernst
FOXG1 is a critical transcription factor in human brain where loss-of-function mutations cause a severe neurodevelopmental disorder, while increased FOXG1 expression is frequently observed in glioblastoma. FOXG1 is an inhibitor of cell patterning and an activator of cell proliferation in chordate model organisms but different mechanisms have been proposed as to how this occurs. To identify genomic targets of FOXG1 in human neural progenitor cells (NPCs), we engineered a cleavable reporter construct in endogenous FOXG1 and performed chromatin immunoprecipitation (ChIP) sequencing...
May 22, 2023: Human Molecular Genetics
https://read.qxmd.com/read/37181652/role-and-mechanism-of-foxg1-related-epigenetic-modifications-in-cisplatin-induced-hair-cell-damage
#38
JOURNAL ARTICLE
Yu-Rong Mu, Sheng-Yu Zou, Ming Li, Yan-Yan Ding, Xiang Huang, Zu-Hong He, Wei-Jia Kong
Cisplatin is widely used in clinical tumor chemotherapy but has severe ototoxic side effects, including tinnitus and hearing damage. This study aimed to determine the molecular mechanism underlying cisplatin-induced ototoxicity. In this study, we used CBA/CaJ mice to establish an ototoxicity model of cisplatin-induced hair cell loss, and our results showed that cisplatin treatment could reduce FOXG1 expression and autophagy levels. Additionally, H3K9me2 levels increased in cochlear hair cells after cisplatin administration...
2023: Frontiers in Molecular Neuroscience
https://read.qxmd.com/read/36993737/top-caregiver-concerns-in-rett-syndrome-and-related-disorders-data-from-the-us-natural-history-study
#39
Jeffrey Lorenz Neul, Timothy A Benke, Eric D Marsh, Bernhard Suter, Lori Silveira, Cary Fu, Sarika U Peters, Alan K Percy, Rett Syndrome Natural History Study Group
Objective: Recent advances in the understanding of neurodevelopmental disorders such as Rett syndrome (RTT) has enabled development of novel therapeutic approaches that are currently undergoing clinical evaluation or are proposed to move into clinical development. Clinical trial success depends on outcome measures that assess clinical features that are most impactful for affected individuals. To determine the top concerns in RTT and RTT-related disorders we asked caregivers to list the top clinical concerns in order to gain information to guide the development and selection of outcome measures for future clinical trials...
March 20, 2023: Research Square
https://read.qxmd.com/read/36968607/effects-of-har1-on-cognitive-function-in-mice-and-the-regulatory-network-of-har1-determined-by-rna-sequencing-and-applied-bioinformatics-analysis
#40
JOURNAL ARTICLE
Luting Zhang, Shengmou Lin, Kailing Huang, Allen Chen, Nan Li, Shuhan Shen, Zhouxia Zheng, Xiaoshun Shi, Jimei Sun, Jingyin Kong, Min Chen
Background: HAR1 is a 118-bp segment that lies in a pair of novel non-coding RNA genes. It shows a dramatic accelerated change with an estimated 18 substitutions in the human lineage since the human-chimpanzee ancestor, compared with the expected 0.27 substitutions based on the slow rate of change in this region in other amniotes. Mutations of HAR1 lead to a different HAR1 secondary structure in humans compared to that in chimpanzees. Methods: We cloned HAR1 into the EF-1α promoter vector to generate transgenic mice...
2023: Frontiers in Genetics
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