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Finite growth models

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https://www.readbyqxmd.com/read/28224240/simulation-of-cell-substrate-traction-force-dynamics-in-response-to-soluble-factors
#1
Tao Liu
Finite element (FE) simulations of contractile responses of vascular muscular thin films (vMTFs) and endothelial cells resting on an array of microposts under stimulation of soluble factors were conducted in comparison with experimental measurements reported in the literature. Two types of constitutive models were employed in the simulations, i.e. smooth muscle cell type and non-smooth muscle cell type. The time histories of the effects of soluble factors were obtained via calibration against experimental measurements of contractile responses of tissues or cells...
February 21, 2017: Biomechanics and Modeling in Mechanobiology
https://www.readbyqxmd.com/read/28213831/a-phenomenological-cohesive-model-for-the-macroscopic-simulation-of-cell-matrix-adhesions
#2
M Cóndor, J M García-Aznar
Cell adhesion is crucial for cells to not only physically interact with each other but also sense their microenvironment and respond accordingly. In fact, adherent cells can generate physical forces that are transmitted to the surrounding matrix, regulating the formation of cell-matrix adhesions. The main purpose of this work is to develop a computational model to simulate the dynamics of cell-matrix adhesions through a cohesive formulation within the framework of the finite element method and based on the principles of continuum damage mechanics...
February 17, 2017: Biomechanics and Modeling in Mechanobiology
https://www.readbyqxmd.com/read/28208490/geometrical-model-for-martensitic-phase-transitions-understanding-criticality-and-weak-universality-during-microstructure-growth
#3
Genís Torrents, Xavier Illa, Eduard Vives, Antoni Planes
A simple model for the growth of elongated domains (needle-like) during a martensitic phase transition is presented. The model is purely geometric and the only interactions are due to the sequentiality of the kinetic problem and to the excluded volume, since domains cannot retransform back to the original phase. Despite this very simple interaction, numerical simulations show that the final observed microstructure can be described as being a consequence of dipolar-like interactions. The model is analytically solved in 2D for the case in which two symmetry related domains can grow in the horizontal and vertical directions...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28208471/analysis-of-thermodiffusive-cellular-instabilities-in-continuum-combustion-fronts
#4
Hossein Azizi, Sebastian Gurevich, Nikolas Provatas
We explore numerically the morphological patterns of thermodiffusive instabilities in combustion fronts with a continuum fuel source, within a range of Lewis numbers and ignition temperatures, focusing on the cellular regime. For this purpose, we generalize the recent model of Brailovsky et al. to include distinct process kinetics and reactant heterogeneity. The generalized model is derived analytically and validated with other established models in the limit of infinite Lewis number for zero-order and first-order kinetics...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28208441/local-average-height-distribution-of-fluctuating-interfaces
#5
Naftali R Smith, Baruch Meerson, Pavel V Sasorov
Height fluctuations of growing surfaces can be characterized by the probability distribution of height in a spatial point at a finite time. Recently there has been spectacular progress in the studies of this quantity for the Kardar-Parisi-Zhang (KPZ) equation in 1+1 dimensions. Here we notice that, at or above a critical dimension, the finite-time one-point height distribution is ill defined in a broad class of linear surface growth models unless the model is regularized at small scales. The regularization via a system-dependent small-scale cutoff leads to a partial loss of universality...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28183665/degradation-in-the-fatigue-crack-growth-resistance-of-human-dentin-by-lactic-acid
#6
Santiago Orrego, Huakun Xu, Dwayne Arola
The oral cavity frequently undergoes localized changes in chemistry and level of acidity, which threatens the integrity of the restorative material and supporting hard tissue. The focus of this study was to evaluate the changes in fatigue crack growth resistance of dentin and toughening mechanisms caused by lactic acid exposure. Compact tension specimens of human dentin were prepared from unrestored molars and subjected to Mode I opening mode cyclic loads. Fatigue crack growth was achieved in samples from mid- and outer-coronal dentin immersed in either a lactic acid solution or neutral conditions...
April 1, 2017: Materials Science & Engineering. C, Materials for Biological Applications
https://www.readbyqxmd.com/read/28156092/highly-reproducible-au-decorated-zno-nanorod-array-on-a-graphite-sensor-for-classification-of-human-aqueous-humors
#7
Wansun Kim, Soo Hyun Lee, Sang Hun Kim, Jae-Chul Lee, Sang Woong Moon, Jae Su Yu, Samjin Choi
Gold-decorated, vertically grown ZnO nanorods (NRs) on a flexible graphite sheet (Au/ZnONRs/G) were developed for surface-enhanced Raman scattering (SERS)-based biosensing to identify trace amounts of human aqueous humors. This Au/ZnONRs/G SERS-functionalized sensor was fabricated via two steps: hydrothermal synthesis-induced growth of ZnO NRs on graphite sheets for nanostructure fabrication, followed by e-beam evaporator-induced gold metallization on ZnONRs/G for SERS functionalization. The thickness of the Au layer and the height of the ZnO NRs for enhancing SERS performance were adjusted to maximize Raman intensity, and the optimized Au/ZnONRs/G nanostructures were verified by the electric finite element computational models to maximize the electric fields...
February 3, 2017: ACS Applied Materials & Interfaces
https://www.readbyqxmd.com/read/28146506/effect-of-boundary-continuity-on-nanosecond-laser-damage-of-nodular-defects-in-high-reflection-coatings
#8
Hongping Ma, Xinbin Cheng, Jinlong Zhang, Hongfei Jiao, Bin Ma, Yongjian Tang, Zhouling Wu, Zhanshan Wang
Two types of engineered nodules in Ta<sub>2</sub>O<sub>5</sub>/SiO<sub>2</sub> high-reflection coatings were prepared using electron beam evaporation and an ion-assisted deposition processes to facilitate poor and good boundary continuity, respectively. The influence of nodular boundary continuity on their nanosecond laser damage characteristics was investigated through experimental studies, combined with 3D finite-difference time domain simulations and photo-thermal micro-characterizations...
February 1, 2017: Optics Letters
https://www.readbyqxmd.com/read/28137248/multidisciplinary-insight-into-clonal-expansion-of-htlv-1-infected-cells-in-adult-t-cell-leukemia-via-modeling-by-deterministic-finite-automata-coupled-with-high-throughput-sequencing
#9
Amir Farmanbar, Sanaz Firouzi, Sung-Joon Park, Kenta Nakai, Kaoru Uchimaru, Toshiki Watanabe
BACKGROUND: Clonal expansion of leukemic cells leads to onset of adult T-cell leukemia (ATL), an aggressive lymphoid malignancy with a very poor prognosis. Infection with human T-cell leukemia virus type-1 (HTLV-1) is the direct cause of ATL onset, and integration of HTLV-1 into the human genome is essential for clonal expansion of leukemic cells. Therefore, monitoring clonal expansion of HTLV-1-infected cells via isolation of integration sites assists in analyzing infected individuals from early infection to the final stage of ATL development...
January 31, 2017: BMC Medical Genomics
https://www.readbyqxmd.com/read/28134347/determination-and-controlling-of-grain-structure-of-metals-after-laser-incidence-theoretical-approach
#10
Amir Reza Ansari Dezfoli, Weng-Sing Hwang, Wei-Chin Huang, Tsung-Wen Tsai
There are serious questions about the grain structure of metals after laser melting and the ways that it can be controlled. In this regard, the current paper explains the grain structure of metals after laser melting using a new model based on combination of 3D finite element (FE) and cellular automaton (CA) models validated by experimental observation. Competitive grain growth, relation between heat flows and grain orientation and the effect of laser scanning speed on final micro structure are discussed with details...
January 30, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28130571/gaussian-approximations-for-chemostat-models-in-finite-and-infinite-dimensions
#11
Bertrand Cloez, Coralie Fritsch
In a chemostat, bacteria live in a growth container of constant volume in which liquid is injected continuously. Recently, Campillo and Fritsch introduced a mass-structured individual-based model to represent this dynamics and proved its convergence to a more classic partial differential equation. In this work, we are interested in the convergence of the fluctuation process. We consider this process in some Sobolev spaces and use central limit theorems on Hilbert space to prove its convergence in law to an infinite-dimensional Gaussian process...
January 27, 2017: Journal of Mathematical Biology
https://www.readbyqxmd.com/read/28106216/kinetics-of-polymer-collapse-effect-of-temperature-on-cluster-growth-and-aging
#12
Suman Majumder, Johannes Zierenberg, Wolfhard Janke
Using state of the art Monte Carlo simulations of a bead-spring model we investigate both the equilibrium and the nonequilibrium behavior of the homopolymer collapse. The equilibrium properties obtained via multicanonical sampling recover the well-known finite-size scaling behavior of collapse for our model polymer. For the nonequilibrium dynamics we study the collapse by quenching the homopolymer from an expanded coiled state into the globular phase. The sequence of events observed during the collapse is independent of the quench depth...
January 20, 2017: Soft Matter
https://www.readbyqxmd.com/read/28087211/the-effect-of-bone-growth-onto-massive-prostheses-collars-in-protecting-the-implant-from-fracture
#13
Paul Fromme, Gordon W Blunn, William J Aston, Tasneem Abdoola, Jacob Koris, Melanie J Coathup
Limb-sparing distal femoral endoprotheses used in cancer patients have a high risk of aseptic loosening. It had been reported that young adolescent patients have a higher rate of loosening and fatigue fracture of intramedullary stems because the implant becomes undersized as patients grow. Extracortical bone growth into the grooved hydroxyapatite-coated collar had been shown to reduce failure rates. The stresses in the implant and femur have been calculated from Finite Element models for different stages of bone growth onto the collar...
January 10, 2017: Medical Engineering & Physics
https://www.readbyqxmd.com/read/28070685/porcine-spine-finite-element-model-a-complementary-tool-to-experimental-scoliosis-fusionless-instrumentation
#14
Bahe Hachem, Carl-Eric Aubin, Stefan Parent
PURPOSE: Developing fusionless devices to treat pediatric scoliosis necessitates lengthy and expensive animal trials. The objective was to develop and validate a porcine spine numerical model as an alternative platform to assess fusionless devices. METHODS: A parametric finite element model (FEM) of an osseoligamentous porcine spine and rib cage, including the epiphyseal growth plates, was developed. A follower-type load replicated physiological and gravitational loads...
January 9, 2017: European Spine Journal
https://www.readbyqxmd.com/read/28063987/a-mathematical-model-for-the-determination-of-forming-tissue-moduli-in-needled-nonwoven-scaffolds
#15
João S Soares, Will Zhang, Michael S Sacks
: Formation of engineering tissues (ET) remains an important scientific area of investigation for both clinical translational and mechanobiological studies. Needled-nonwoven (NNW) scaffolds represent one of the most ubiquitous biomaterials based on their well-documented capacity to sustain tissue formation and the unique property of substantial construct stiffness amplification, the latter allowing for very sensitive determination of forming tissue modulus. Yet, their use in more fundamental studies is hampered by the lack of: (1) substantial understanding of the mechanics of the NNW scaffold itself under finite deformations and means to model the complex mechanical interactions between scaffold fibers, cells, and de novo tissue; and (2) rational models with reliable predictive capabilities describing their evolving mechanical properties and their response to mechanical stimulation...
January 5, 2017: Acta Biomaterialia
https://www.readbyqxmd.com/read/28057457/sustainable-theory-of-a-logistic-model-fisher-information-approach
#16
Avan Al-Saffar, Eun-Jin Kim
Information theory provides a useful tool to understand the evolution of complex nonlinear systems and their sustainability. In particular, Fisher information has been evoked as a useful measure of sustainability and the variability of dynamical systems including self-organising systems. By utilising Fisher information, we investigate the sustainability of the logistic model for different perturbations in the positive and/or negative feedback. Specifically, we consider different oscillatory modulations in the parameters for positive and negative feedback and investigate their effect on the evolution of the system and Probability Density Functions (PDFs)...
January 2, 2017: Mathematical Biosciences
https://www.readbyqxmd.com/read/28038689/outcomes-of-optimal-distraction-forces-and-frequencies-in-growth-rod-surgery-for-different-types-of-scoliotic-curves-an-in-silico-and-in%C3%A2-vitro-study
#17
Aakash Agarwal, Anand K Agarwal, Arvind Jayaswal, Vijay K Goel
OBJECTIVE: Analyze the effects of the distraction forces and frequencies on multiple representative scoliotic curves and to establish a relationship between high distraction forces and screw loosening. STUDY DESIGN: Multiple representative finite-element models of a juvenile scoliotic spine were used to study the effects of the magnitude and frequency of distraction on growth rods. METHODS: Simulation of 6 months of growth under various distraction forces to analyze the effects of distraction forces on the biomechanics of the scoliotic spine and growth rod instrumentation; simulation of 24 months of growth under various intervals of distraction to analyze the effects of the distraction interval on the propensity for rod fracture; in vitro study to assess screw loosening after 6 months...
January 2017: Spine Deformity
https://www.readbyqxmd.com/read/27967091/network-model-of-human-aging-frailty-limits-and-information-measures
#18
Spencer G Farrell, Arnold B Mitnitski, Kenneth Rockwood, Andrew D Rutenberg
Aging is associated with the accumulation of damage throughout a persons life. Individual health can be assessed by the Frailty Index (FI). The FI is calculated simply as the proportion f of accumulated age-related deficits relative to the total, leading to a theoretical maximum of f≤1. Observational studies have generally reported a much more stringent bound, with f≤f_{max}<1. The value of f_{max} in observational studies appears to be nonuniversal, but f_{max}≈0.7 is often reported. A previously developed network model of individual aging was unable to recover f_{max}<1 while retaining the other observed phenomenology of increasing f and mortality rates with age...
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27934528/equilibrium-grain-boundary-segregation-and-clustering-of-impurities-in-colloidal-polycrystalline-monolayers
#19
François A Lavergne, Samuel Diana, Dirk G A L Aarts, Roel P A Dullens
We investigate the segregation of impurities to grain boundaries in colloidal polycrystalline monolayers using video microscopy. A model colloidal alloy is prepared by embedding large spherical impurities in a polycrystalline monolayer of small host colloidal hard spheres, which stops grain growth at a finite grain size. The size ratio between the impurities and the host particles determines whether they behave as interstitial or substitutional impurities in the bulk crystal, akin to those in real alloys. We find that the partitioning of impurities between the grains and the grain boundaries is in very good agreement with the Langmuir-McLean adsorption model for equilibrium grain boundary segregation...
December 6, 2016: Langmuir: the ACS Journal of Surfaces and Colloids
https://www.readbyqxmd.com/read/27927513/biomechanical-assessment-of-providence-nighttime-brace-for-the-treatment-of-adolescent-idiopathic-scoliosis
#20
Amjad Sattout, Julien Clin, Nikita Cobetto, Hubert Labelle, Carl-Eric Aubin
STUDY DESIGN: Biomechanical study of the Providence brace for the treatment of adolescent idiopathic scoliosis (AIS). OBJECTIVES: To model and assess the effectiveness of Providence nighttime brace. SUMMARY OF BACKGROUND DATA: Providence nighttime brace is an alternative to traditional daytime thoracolumbosacral orthosis for the treatment of moderate scoliotic deformities. It applies three-point pressure to reduce scoliotic curves. The biomechanics of the supine position and Providence brace is still poorly understood...
July 2016: Spine Deformity
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