keyword
https://read.qxmd.com/read/38514754/elevated-pde4c-level-serves-as-a-candidate-diagnostic-biomarker-and-correlates-with-poor-survival-in-thyroid-carcinoma
#1
JOURNAL ARTICLE
Ying Wang, Yongsheng Zhang, Yanyan Li, Jing Huang
Thyroid carcinoma (THCA) is the most common endocrine cancer. Phosphodiesterase (PDE) 4 enzyme family, as specific regulator of cyclic adenosine monophosphate, may play a important role in THCA. However, few studies on PDE4 enzyme family in THCA have been reported yet. Therefore, this study aimed to systematically analyze the changes of PDE4 enzyme family in THCA, and look for potential target for THCA therapy. We systematically analyzed the expression differences, prognostic value, genetic alteration, methylation modification, and the correlation with tumor immune microenvironment of PDE4 family in THCA using several public databases, including TCGA, GEO, GSCA, TNMplot, cBioPortal, DiseaseMeth and TIMER...
March 21, 2024: Scientific Reports
https://read.qxmd.com/read/38350568/reprogramming-of-dna-methylation-patterns-mediates-perfluorooctane-sulfonate-induced-fetal-cardiac-dysplasia
#2
JOURNAL ARTICLE
Min Qiu, Jing Chen, Mingqin Liu, Yan Shi, Zhiqiang Nie, Guanghui Dong, Xiaohong Li, Jimei Chen, Yanqiu Ou, Jian Zhuang
Prenatal exposure to perfluorooctane sulfonate (PFOS) is associated with adverse health effects, including congenital heart disease, yet the underlying mechanisms remain elusive. Herein, we aimed to evaluate the embryotoxicity of PFOS using C57BL/6 J mice to characterize fetal heart defects after PFOS exposure, with the induction of human embryonic stem cells (hESC) into cardiomyocytes (CMs) as a model of early-stage heart development. We also performed DNA methylation analysis to clarify potential underlying mechanisms and identify targets of PFOS...
February 11, 2024: Science of the Total Environment
https://read.qxmd.com/read/38224928/genetic-variants-of-the-beta-adrenergic-receptor-pathways-as-both-risk-and-protective-factors-for-retinopathy-of-prematurity
#3
JOURNAL ARTICLE
Hélène Paradis, Salem Werdyani, Guangju Zhai, Robert L Gendron, Reza Tabrizchi, Margaret McGovern, J Michael Jumper, Daniel Brinton, William V Good
PURPOSE: There is strong evidence that genetic factors influence retinopathy of prematurity (ROP), a neovascular eye disease. It has been previously suggested that polymorphisms in the genes involved in beta-adrenergic receptor (ADRβ) pathways could protect against ROP. Antagonists for the ADRβ are actively tested in clinical trials for ROP treatment but not without controversy and safety concerns. This study was designed to assess if genetic variations in components of the ADRβ signaling pathways associate with risk of developing ROP...
January 13, 2024: American Journal of Ophthalmology
https://read.qxmd.com/read/38166718/genome-wide-detection-of-selection-signatures-in-jianli-pigs-reveals-novel-cis-regulatory-haplotype-in-ednrb-associated-with-two-end-black-coat-color
#4
JOURNAL ARTICLE
Zhong Xu, Junjing Wu, Yu Zhang, Mu Qiao, Jiawei Zhou, Yue Feng, Zipeng Li, Hua Sun, Ruiyi Lin, Zhongxu Song, Haizhong Zhao, Lianghua Li, Nanqi Chen, Yujie Li, Favour Oluwapelumi Oyelami, Xianwen Peng, Shuqi Mei
BACKGROUND: Jianli pig, a renowned indigenous breed in China, has the characteristics of a two-end black (TEB) coat color, excellent meat quality, strong adaptability and increased prolificacy. However, there is limited information available regarding the genetic diversity, population structure and genomic regions under selection of Jianli pig. On the other hand, the genetic mechanism of TEB coat color has remained largely unknown. RESULTS: In this study, the whole genome resequencing of 30 Jianli pigs within a context of 153 individuals representing 13 diverse breeds was performed...
January 2, 2024: BMC Genomics
https://read.qxmd.com/read/38066059/a-novel-feature-selection-algorithm-for-identifying-hub-genes-in-lung-cancer
#5
JOURNAL ARTICLE
Tehnan I A Mohamed, Absalom E Ezugwu, Jean Vincent Fonou-Dombeu, Mohanad Mohammed, Japie Greeff, Murtada K Elbashir
Lung cancer, a life-threatening disease primarily affecting lung tissue, remains a significant contributor to mortality in both developed and developing nations. Accurate biomarker identification is imperative for effective cancer diagnosis and therapeutic strategies. This study introduces the Voting-Based Enhanced Binary Ebola Optimization Search Algorithm (VBEOSA), an innovative ensemble-based approach combining binary optimization and the Ebola optimization search algorithm. VBEOSA harnesses the collective power of the state-of-the-art classification models through soft voting...
December 7, 2023: Scientific Reports
https://read.qxmd.com/read/37951509/soluble-adenylyl-cyclase-the-cell-autonomous-member-of-the-family
#6
JOURNAL ARTICLE
Hang Lam Li, Simei Go, Jung-Chin Chang, Arthur Verhoeven, Ronald Oude Elferink
Soluble adenylyl cyclase (sAC) is the evolutionarily most ancient of a set of 10 adenylyl cyclases (Adcys). While Adcy1 to Adcy9 are cAMP-producing enzymes that are activated by G-protein coupled receptors (GPCRs), Adcy10 (sAC) is an intracellular adenylyl cyclase. sAC plays a pivotal role in numerous cellular processes, ranging from basic physiological functions to complex signaling cascades. As a distinct member of the adenylyl cyclase family, sAC is not activated by GPCRs and stands apart due to its unique characteristics, regulation, and localization within cells...
November 8, 2023: Biochimica et Biophysica Acta. Molecular Basis of Disease
https://read.qxmd.com/read/37857178/weighted-single-step-genome-wide-association-study-and-functional-enrichment-analyses-for-gastrointestinal-nematode-resistance-traits-in-santa-ines-sheep
#7
JOURNAL ARTICLE
Nedenia Bonvino Stafuzza, Ana Claudia de Freitas, Marina B Mioto, Rafael Medeiros de Oliveira Silva, Breno de Oliveira Fragomeni, Victor Breno Pedrosa, Ricardo Lopes Dias da Costa, Claudia Cristina Paro de Paz
This study aimed to identify genomic regions, pathways, and putative candidate genes associated with resistance to gastrointestinal nematode in Santa Ines sheep. The phenotypic information comprised 5529 records from 1703 naturally infected animals. After genomic data quality control, 37,511 SNPs from 589 animals were available. The weighted single-step approach for genome-wide association study was performed to estimate the SNP effects and variances accounted by 10-SNP sliding windows. Confirming the polygenic nature of the studied traits, 20, 22, 21, and 19 genomic windows that explained more than 0...
October 7, 2023: Veterinary Parasitology
https://read.qxmd.com/read/37782102/phloretin-alleviates-palmitic-acid-induced-oxidative-stress-in-huvec-cells-by-suppressing-the-expression-of-lncbag6-as
#8
JOURNAL ARTICLE
Jie Li, Qing Yang, Hongfei Liu, Min Wang, Chuanying Pan, Lin Han, Xianyong Lan
Oxidative stress (OS) is an important trigger of vascular endothelial injury (VEI), which then leads to cardiovascular disease (CVDs). Phloretin was previously investigated to alleviate OS in human umbilical vein endothelial cells (HUVECs) by activating the AMPK/Nrf2 pathway; however, whether phloretin exerts cardiovascular health benefits by targeting non-coding RNAs (ncRNAs) remains unclear. Herein, the whole transcriptome sequencing and lncRNA library building were performed on HUVECs, a commonly used cell line for CVDs study, from different groups in control (CK), palmitic acid (PA, 100 μM), and PA + phloretin (50 μM, G50)...
October 2, 2023: Food & Function
https://read.qxmd.com/read/37579959/the-rs2601796-variant-in-adcy9-gene-is-associated-with-severe-asthma-and-less-bronchodilator-response
#9
JOURNAL ARTICLE
Helena M P Teixeira, Álvaro A Cruz, Talita S Jesus, Maria B R de Santana, Marinalva S Jesus, Rafaela Tugores, Wedson S Araujo, Rebeca C C Reis, Gabriela P Pinheiro, Camila A Figueiredo, Ryan S Costa
No abstract text is available yet for this article.
August 12, 2023: Gene
https://read.qxmd.com/read/37569643/gene-smoking-interaction-analysis-for-the-identification-of-novel-asthma-associated-genetic-factors
#10
JOURNAL ARTICLE
Junho Cha, Sungkyoung Choi
Asthma is a complex heterogeneous disease caused by gene-environment interactions. Although numerous genome-wide association studies have been conducted, these interactions have not been systemically investigated. We sought to identify genetic factors associated with the asthma phenotype in 66,857 subjects from the Health Examination Study, Cardiovascular Disease Association Study, and Korea Association Resource Study cohorts. We investigated asthma-associated gene-environment (smoking status) interactions at the level of single nucleotide polymorphisms, genes, and gene sets...
July 31, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37065546/adcy9-functions-as-a-novel-cancer-suppressor-gene-in-lung-adenocarcinoma
#11
JOURNAL ARTICLE
Yijie Tang, Tianyi Wang, Anping Zhang, Jiaqi Zhu, Tingting Zhou, You-Lang Zhou, Jiahai Shi
BACKGROUND: The process of lucubrating into lung adenocarcinoma (LUAD) is of profound clinical and practical significance in improving the prognosis of LUAD patients. Multiple biomarkers are reportedly involved in the proliferation or metastasis of adenocarcinoma. However, whether the ADCY9 gene influences the development of LUAD remains unknown. Therefore, we aimed to elucidate the relationship between the expression of ADCY9 and the proliferation and migration of LUAD. METHODS: The ADCY9 gene was filtered via a survival analysis of LUAD acquired from the Gene Expression Omnibus (GEO)...
March 31, 2023: Journal of Thoracic Disease
https://read.qxmd.com/read/37054880/adcy9-gene-inactivation-improves-cardiac-function-after-myocardial-infarction-in-mice
#12
JOURNAL ARTICLE
Marine Ferron, Nolwenn Merlet, Teodora Mihalache-Avram, Mélanie Mecteau, Geneviève Brand, Marc-Antoine Gillis, Yanfen Shi, Anna Nozza, Mariève Cossette, Marie-Claude Guertin, Eric Rhéaume, Jean-Claude Tardif
BACKGROUND: Polymorphisms in the adenylate cyclase 9 (ADCY9) gene influence the benefits of the cholesteryl ester transfer protein (CETP) modulator dalcetrapib on cardiovascular events after acute coronary syndrome. We hypothesized that Adcy9 inactivation could improve cardiac function and remodeling following myocardial infarction (MI) in absence of CETP activity. METHODS: Wild-type (WT) and Adcy9-inactivated (Adcy9Gt/Gt ) male mice, transgenic or not for human CETP (tgCETP+/- ), were subjected to MI by permanent left anterior descending coronary artery ligation and studied for 4 weeks...
April 11, 2023: Canadian Journal of Cardiology
https://read.qxmd.com/read/36997581/defective-bves-mediated-feedback-control-of-camp-in-muscular-dystrophy
#13
JOURNAL ARTICLE
Haiwen Li, Peipei Wang, Chen Zhang, Yuanbojiao Zuo, Yuan Zhou, Renzhi Han
Biological processes incorporate feedback mechanisms to enable positive and/or negative regulation. cAMP is an important second messenger involved in many aspects of muscle biology. However, the feedback mechanisms for the cAMP signaling control in skeletal muscle are largely unknown. Here we show that blood vessel epicardial substance (BVES) is a negative regulator of adenylyl cyclase 9 (ADCY9)-mediated cAMP signaling involved in maintaining muscle mass and function. BVES deletion in mice reduces muscle mass and impairs muscle performance, whereas virally delivered BVES expressed in Bves-deficient skeletal muscle reverses these defects...
March 30, 2023: Nature Communications
https://read.qxmd.com/read/36583723/single-nucleus-rna-and-atac-sequencing-uncovers-the-molecular-and-cellular-characteristics-in-the-musk-gland-of-chinese-forest-musk-deer-moschus-berezovskii
#14
JOURNAL ARTICLE
Chenmiao Liu, Tingting Hong, Lin Yu, Yuan Chen, Shuhui Wang, Zhanjun Ren
The Chinese forest musk deer (FMD; Moschus berezovskii) is an endangered artiodactyl mammal. Musk secreted by the musk gland of male has extremely high economic and medicinal value. However, the molecular and cellular characteristics of the musk gland have not been studied. Here, we investigated the diversity and transcriptional composition of musk gland cell types and the effect of cell type-specific chromatin accessibility on gene expression using single-nucleus RNA sequencing (snRNA-seq) and single-nucleus ATAC sequencing (snATAC-seq) association analysis...
February 2023: FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology
https://read.qxmd.com/read/36536439/association-between-genetic-risk-score-and-tri-ponderal-mass-index-growth-trajectories-among-different-dietary-consumption-adolescents-in-a-prospective-taiwanese-cohort
#15
JOURNAL ARTICLE
Yi-Fan Wu, Kuo-Liong Chien, Yang-Ching Chen
BACKGROUND: Single-nucleotide polymorphisms (SNPs) in various genetic loci are associated with childhood obesity; however, their influence on adolescent growth patterns has rarely been explored. This study investigated whether genetic variants could predict tri-ponderal mass index (TMI)-derived growth trajectories and the interaction between genetic and dietary factors. METHODS: We conducted Taiwan Puberty Longitudinal Study, a prospective cohort that recruited 1,135 children since 2018...
December 19, 2022: Nutrition & Metabolism
https://read.qxmd.com/read/36324508/genetic-architecture-and-selection-of-anhui-autochthonous-pig-population-revealed-by-whole-genome-resequencing
#16
JOURNAL ARTICLE
Wei Zhang, Xiaojin Li, Yao Jiang, Mei Zhou, Linqing Liu, Shiguang Su, Chengliang Xu, Xueting Li, Chonglong Wang
The genetic resources among pigs in Anhui Province are diverse, but their value and potential have yet to be discovered. To illustrate the genetic diversity and population structure of the Anhui pigs population, we resequenced the genome of 150 pigs from six representative Anhui pigs populations and analyzed this data together with the sequencing data from 40 Asian wild boars and commercial pigs. Our results showed that Anhui pigs were divided into two distinct types based on ancestral descent: Wannan Spotted pig (WSP) and Wannan Black pig (WBP) origins from the same ancestor and the other four populations origins from another ancestor...
2022: Frontiers in Genetics
https://read.qxmd.com/read/36254885/popdc1-scaffolds-a-complex-of-adenylyl-cyclase-9-and-the-potassium-channel-trek-1-in-heart
#17
JOURNAL ARTICLE
Tanya A Baldwin, Yong Li, Autumn N Marsden, Susanne Rinné, Anibal Garza-Carbajal, Roland F R Schindler, Musi Zhang, Mia A Garcia, Venugopal Reddy Venna, Niels Decher, Thomas Brand, Carmen W Dessauer
The establishment of macromolecular complexes by scaffolding proteins is key to the local production of cAMP by anchored adenylyl cyclase (AC) and the subsequent cAMP signaling necessary for cardiac functions. We identify a novel AC scaffold, the Popeye domain-containing (POPDC) protein. The POPDC family of proteins is important for cardiac pacemaking and conduction, due in part to their cAMP-dependent binding and regulation of TREK-1 potassium channels. We show that TREK-1 binds the AC9:POPDC1 complex and copurifies in a POPDC1-dependent manner with AC9 activity in heart...
October 18, 2022: EMBO Reports
https://read.qxmd.com/read/36232428/meta-analysis-identifies-bdnf-and-novel-common-genes-differently-altered-in-cross-species-models-of-rett-syndrome
#18
JOURNAL ARTICLE
Florencia Haase, Rachna Singh, Brian Gloss, Patrick Tam, Wendy Gold
Rett syndrome (RTT) is a rare disorder and one of the most abundant causes of intellectual disabilities in females. Single mutations in the gene coding for methyl-CpG-binding protein 2 (MeCP2) are responsible for the disorder. MeCP2 regulates gene expression as a transcriptional regulator as well as through epigenetic imprinting and chromatin condensation. Consequently, numerous biological pathways on multiple levels are influenced. However, the exact molecular pathways from genotype to phenotype are currently not fully elucidated...
September 22, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/36111722/-association-of-the-adcy9-gene-and-gene-environmental-interaction-with-the-susceptibility-to-childhood-bronchial-asthma
#19
JOURNAL ARTICLE
Jing-Jing Jia, Bing Wei, Ling-Xue Li, Meng-Yang Ren, Shi-Nan Zhang, Jun Liu, Yu-Xuan Zhang
OBJECTIVES: To study the association of the single nucleotide polymorphisms (SNPs) of the adenylyl cyclase IX ( ADCY9 ) gene at rs1967309, rs2230739, rs2601814, rs2601825, rs2601796, and rs2283497 loci and gene-environment interaction with childhood bronchial asthma (asthma for short). METHODS: A total of 123 children with asthma who attended the hospital from March 2019 to September 2021 were enrolled as the asthma group, among whom 84 (68.3%) had mild-to-moderate attacks and 39 (31...
2022: Zhongguo Dang Dai Er Ke za Zhi, Chinese Journal of Contemporary Pediatrics
https://read.qxmd.com/read/35856777/pharmacogenetics-guided-dalcetrapib-therapy-after-an-acute-coronary-syndrome-the-dal-gene-trial
#20
RANDOMIZED CONTROLLED TRIAL
Jean Claude Tardif, Marc A Pfeffer, Simon Kouz, Wolfgang Koenig, Aldo P Maggioni, John J V McMurray, Vincent Mooser, David D Waters, Jean C Grégoire, Philippe L L'Allier, J Wouter Jukema, Harvey D White, Therese Heinonen, Donald M Black, Fouzia Laghrissi-Thode, Sylvie Levesque, Marie Claude Guertin, Marie Pierre Dubé
AIMS: In a retrospective analysis of dal-Outcomes, the effect of dalcetrapib on cardiovascular events was influenced by an adenylate cyclase type 9 (ADCY9) gene polymorphism. The dal-GenE study was conducted to test this pharmacogenetic hypothesis. METHODS AND RESULTS: dal-GenE was a double-blind trial in patients with an acute coronary syndrome within 1-3 months and the AA genotype at variant rs1967309 in the ADCY9 gene. A total of 6147 patients were randomly assigned to receive dalcetrapib 600 mg or placebo daily...
October 14, 2022: European Heart Journal
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