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https://www.readbyqxmd.com/read/28099079/lymphangioleiomyomatosis-a-monogenic-model-of-malignancy
#1
Vera P Krymskaya, Francis X McCormack
Lymphangioleiomyomatosis (LAM) is a rare, low-grade, metastasizing neoplasm that arises from an unknown source, spreads via the lymphatics, and targets the lungs. All pulmonary structures become infiltrated with benign-appearing spindle and epithelioid cells (LAM cells) that express smooth-muscle and melanocyte-lineage markers, harbor mTOR-activating mutations in tuberous sclerosis complex (TSC) genes, and recruit abundant stromal cells. Elaboration of lymphangiogenic growth factors and matrix remodeling enzymes by LAM cells enables their access to lymphatic channels and likely drives the cystic lung remodeling that often culminates in respiratory failure...
January 14, 2017: Annual Review of Medicine
https://www.readbyqxmd.com/read/28097956/biohydrogen-production-from-used-diapers-evaluation-of-effect-of-temperature-and-substrate-conditioning
#2
P X Sotelo-Navarro, H M Poggi-Varaldo, S J Turpin-Marion, A Vázquez-Morillas, M Beltrán-Villavicencio, R M Espinosa-Valdemar
This research assessed the viability to use disposable diapers as a substrate for the production of biohydrogen, a valuable clean-energy source. The important content of cellulose of disposable diapers indicates that this waste could be an attractive substrate for biofuel production. Two incubation temperatures (35 °C and 55 °C) and three diaper conditioning methods (whole diapers with faeces, urine, and plastics, WD; diapers without plastic components, with urine and faeces, DWP; diapers with urine but without faeces and plastic, MSD) were tested in batch bioreactors...
January 1, 2017: Waste Management & Research
https://www.readbyqxmd.com/read/28097050/microbial-communities-mediating-algal-detritus-turnover-under-anaerobic-conditions
#3
Jessica M Morrison, Chelsea L Murphy, Kristina Baker, Richard M Zamor, Steve J Nikolai, Shawn Wilder, Mostafa S Elshahed, Noha H Youssef
BACKGROUND: Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various algal species have been touted as promising candidates for anaerobic biogas production from biomass. Surprisingly, in spite of its ecological and economic relevance, the microbial community involved in algal detritus turnover under anaerobic conditions remains largely unexplored...
2017: PeerJ
https://www.readbyqxmd.com/read/28094795/impacts-of-chemical-gradients-on-microbial-community-structure
#4
Jianwei Chen, Anna Hanke, Halina E Tegetmeyer, Ines Kattelmann, Ritin Sharma, Emmo Hamann, Theresa Hargesheimer, Beate Kraft, Sabine Lenk, Jeanine S Geelhoed, Robert L Hettich, Marc Strous
Succession of redox processes is sometimes assumed to define a basic microbial community structure for ecosystems with oxygen gradients. In this paradigm, aerobic respiration, denitrification, fermentation and sulfate reduction proceed in a thermodynamically determined order, known as the 'redox tower'. Here, we investigated whether redox sorting of microbial processes explains microbial community structure at low-oxygen concentrations. We subjected a diverse microbial community sampled from a coastal marine sediment to 100 days of tidal cycling in a laboratory chemostat...
January 17, 2017: ISME Journal
https://www.readbyqxmd.com/read/28094552/glucose-metabolism-in-cancer-and-ischemia-possible-therapeutic-consequences-of-the-warburg-effect
#5
Spela Salamon, Eva Podbregar, Peter Kubatka, Dietrich Büsselberg, Martin Caprnda, Radka Opatrilova, Vanda Valentova, Mariusz Adamek, Peter Kruzliak, Matej Podbregar
The Warburg effect states that the main source of energy for cancer cells is not aerobic respiration, but glycolysis-even in normoxia. The shift from one to the other is governed by mutually counteracting enzymes: pyruvate dehydrogenase and pyruvate dehydrogenase kinase (PDK). Anaerobic metabolism of cancer cells promotes cell proliferation, local tissue immunosuppression, resistance to hypoxic conditions, and metastatic processes. By switching glucose back to oxidative metabolism, these effects might be reversed...
January 17, 2017: Nutrition and Cancer
https://www.readbyqxmd.com/read/28094526/1h-nmr-based-global-metabolic-studies-of-pseudomonas-aeruginosa-upon-exposure-of-the-quorum-sensing-inhibitor-resveratrol
#6
Tongtong Chen, Jiyang Sheng, Yonghong Fu, Ming-Hui Li, Jun-Song Wang, Aiqun Jia
Quorum sensing (QS) is a process of bacterial communication that has been a novel target for drug discovery. Pyocyanin quantification assay confirmed that resveratrol was an effective quorum sensing inhibitor (QSI) against Pseudomonas aeruginosa PAO1. In this study, the global metabolite changes of P. aeruginosa PAO1 exposed to QSI resveratrol were investigated by 1H-NMR spectroscopy. A total of 40 metabolites containing amino acids, organic acid, organic amine and energy storage compounds were identified. The changed metabolic profile indicated that resveratrol influenced pathways including oxidative stress, protein synthesis and energy metabolism...
January 17, 2017: Journal of Proteome Research
https://www.readbyqxmd.com/read/28090141/do-maximal-aerobic-power-and-blood-lactate-concentration-affect-specific-judo-fitness-test-performance-in-female-judo-athletes
#7
H Garbouj, M A Selmi, R Haj Sassi, M Haj Yahmed, K Chamari, A Chaouachi
The Special Judo Fitness Test (SJFT) has become the test most widely used by coaches and physical trainers for assessment of competitors' judo-specific physical aptitude and training programme prescription. The aim of this study was to investigate the relationship between the SJFT performance indices and both maximal aerobic power and the level of blood lactate concentrations in female judo athletes. Seventeen female judokas (age: 21.9±1.6 years, body mass: 74.6±27.4 kg, height: 164.5±8.6 cm; BMI: 27.1±8...
December 2016: Biology of Sport
https://www.readbyqxmd.com/read/28088723/discovery-and-metagenomic-analysis-of-an-anammox-bacterial-enrichment-related-to-candidatus-brocadia-caroliniensis-in-a-full-scale-glycerol-fed-nitritation-denitritation-separate-centrate-treatment-process
#8
Hongkeun Park, Ariane C Brotto, Mark C M van Loosdrecht, Kartik Chandran
A distinctive red biofilm was observed in a glycerol-fed digester liquid effluent treatment process coupling partial nitrification (nitritation) and partial denitrification (denitritation) processes. Based on initial phylogenetic screening using 16S rRNA clone libraries and quantitative polymerase chain reaction, the biofilm was enriched in novel anaerobic ammonium oxidizing bacteria (AMX/anammox) closely related to Candidatus "Brocadia caroliniensis". The metabolic functionality of the C. "Brocadia caroliniensis" enrichment was further explored using high-throughput sequencing and de novo metagenome assembly...
January 6, 2017: Water Research
https://www.readbyqxmd.com/read/28074924/metabotyping-patients-journeys-reveals-early-predisposition-to-lung-injury-after-cardiac-surgery
#9
Raluca Georgiana Maltesen, Bodil Steen Rasmussen, Shona Pedersen, Munsoor Ali Hanifa, Sergey Kucheryavskiy, Søren Risom Kristensen, Reinhard Wimmer
Cardiovascular disease is the leading cause of death worldwide and patients with severe symptoms undergo cardiac surgery. Even after uncomplicated surgeries, some patients experience postoperative complications such as lung injury. We hypothesized that the procedure elicits metabolic activity that can be related to the disease progression, which is commonly observed two-three days postoperatively. More than 700 blood samples were collected from 50 patients at nine time points pre-, intra-, and postoperatively...
January 11, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28070865/sphingosine-1-phosphate-pretreatment-amends-hypoxia-induced-metabolic-dysfunction-and-impairment-of-myogenic-potential-in-differentiating-c2c12-myoblasts-by-stimulating-viability-calcium-homeostasis-and-energy-generation
#10
Babita Rahar, Sonam Chawla, Sanjay Pandey, Anant Narayan Bhatt, Shweta Saxena
Sphingosine-1-phosphate (S1P) has a role in transpiration in patho-physiological signaling in skeletal muscles. The present study evaluated the pre-conditioning efficacy of S1P in facilitating differentiation of C2C12 myoblasts under a normoxic/hypoxic cell culture environment. Under normoxia, exogenous S1P significantly promoted C2C12 differentiation as evident from morphometric descriptors and differentiation markers of the mature myotubes, but it could facilitate only partial recovery from hypoxia-induced compromised differentiation...
January 9, 2017: Journal of Physiological Sciences: JPS
https://www.readbyqxmd.com/read/28070664/transcriptome-and-metabolome-responses-of-shewanella-oneidensis-mr-1-to-methyl-orange-under-microaerophilic-and-aerobic-conditions
#11
Xinhua Cao, Yueling Qi, Chen Xu, Yuyi Yang, Jun Wang
Shewanella oneidensis MR-1 degrades various azo dyes under microaerophilic and anaerobic conditions, but this process is inhibited under aerobic conditions. The mechanisms underlying azo dye biodegradation and inhibition remain unknown. Therefore, we investigated metabolic and transcriptional changes in strain MR-1, which was cultured under different conditions, to elucidate these mechanisms. At the transcriptional level, genes involved in certain metabolic processes, particularly the tricarboxylic acid (TCA) cycle, amino acid biodegradation, and the electron transfer system, were significantly altered (M ≧ 2, p > 0...
January 9, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28070216/metabolism-in-anoxic-permeable-sediments-is-dominated-by-eukaryotic-dark-fermentation
#12
Michael F Bourke, Philip J Marriott, Ronnie N Glud, Harald Hasler-Sheetal, Manoj Kamalanathan, John Beardall, Chris Greening, Perran L M Cook
Permeable sediments are common across continental shelves and are critical contributors to marine biogeochemical cycling. Organic matter in permeable sediments is dominated by microalgae, which as eukaryotes have different anaerobic metabolic pathways to prokaryotes such as bacteria and archaea. Here we present analyses of flow-through reactor experiments showing that dissolved inorganic carbon is produced predominantly as a result of anaerobic eukaryotic metabolic activity. In our experiments, anaerobic production of dissolved inorganic carbon was consistently accompanied by large dissolved H2 production rates, suggesting the presence of fermentation...
January 2017: Nature Geoscience
https://www.readbyqxmd.com/read/28069396/multi-level-evaluation-of-escherichia-coli-polyphosphate-related-mutants-using-global-transcriptomic-proteomic-and-phenomic-analyses
#13
Macarena Varas, Camilo Valdivieso, Cecilia Mauriaca, Javiera Ortíz-Severín, Alberto Paradela, Ignacio Poblete-Castro, Ricardo Cabrera, Francisco P Chávez
BACKGROUND: Polyphosphate (polyP) is a linear biopolymer found in all living cells. In bacteria, mutants lacking polyphosphate kinase 1 (PPK1), the enzyme responsible for synthesis of most polyP, have many structural and functional defects. However, little is known about the causes of these pleiotropic alterations. The link between ppk1 deletion and those numerous phenotypes observed can be the result of complex molecular interactions that can be elucidated via a systems biology approach...
January 6, 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/28067643/biological-phosphorus-removal-in-anoxic-aerobic-sequencing-batch-reactor-with-starch-as-sole-carbon-source
#14
Dacheng Luo, Linjiang Yuan, Lun Liu, Lu Chai, Xin Wang
In traditional biological phosphorus removal (BPR), phosphorus release in anaerobic stage is the prerequisite of phosphorus excessive uptake in aerobic conditions. Moreover, when low molecular weight of the organic substance such as volatile fatty acids (VFAs) is scarce in bulk liquid or anaerobic condition does not exist, phosphate accumulating organisms (PAOs) have difficulty removing phosphorus. However, in this work, phosphorus removal in two anoxic-aerobic sequencing batch reactors (SBRs) was observed when starch was supplied as a sole carbon source...
January 2017: Water Science and Technology: a Journal of the International Association on Water Pollution Research
https://www.readbyqxmd.com/read/28067254/unusual-respiratory-capacity-and-nitrogen-metabolism-in-a-parcubacterium-od1-of-the-candidate-phyla-radiation
#15
Cindy J Castelle, Christopher T Brown, Brian C Thomas, Kenneth H Williams, Jillian F Banfield
The Candidate Phyla Radiation (CPR) is a large group of bacteria, the scale of which approaches that of all other bacteria. CPR organisms are inferred to depend on other community members for many basic cellular building blocks and all appear to be obligate anaerobes. To date, there has been no evidence for any significant respiratory capacity in an organism from this radiation. Here we report a curated draft genome for 'Candidatus Parcunitrobacter nitroensis' a member of the Parcubacteria (OD1) superphylum of the CPR...
January 9, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28067226/syntrophic-anaerobic-photosynthesis-via-direct-interspecies-electron-transfer
#16
Phuc T Ha, Stephen R Lindemann, Liang Shi, Alice C Dohnalkova, James K Fredrickson, Michael T Madigan, Haluk Beyenal
Microbial phototrophs, key primary producers on Earth, use H2O, H2, H2S and other reduced inorganic compounds as electron donors. Here we describe a form of metabolism linking anoxygenic photosynthesis to anaerobic respiration that we call 'syntrophic anaerobic photosynthesis'. We show that photoautotrophy in the green sulfur bacterium Prosthecochloris aestaurii can be driven by either electrons from a solid electrode or acetate oxidation via direct interspecies electron transfer from a heterotrophic partner bacterium, Geobacter sulfurreducens...
January 9, 2017: Nature Communications
https://www.readbyqxmd.com/read/28067053/global-profiling-of-metabolite-and-lipid-soluble-microbial-products-in-anaerobic-wastewater-reactor-supernatant-using-uplc-mse
#17
Phornpimon Tipthara, Chinagarn Kunacheva, Yan Ni Annie Soh, Stephen C C Wong, Ng Sean Pin, David C Stuckey, Bernhard O Boehm
Identification of soluble microbial products (SMPs) released during bacterial metabolism in mixed cultures in bioreactors is essential to understanding fundamental mechanisms of their biological production. SMPs constitute one of the main foulants (together with colloids and bacterial flocs) in membrane bioreactors widely used to treat, and ultimately recycle wastewater. More importantly, the composition and origin of potentially toxic, carcinogenic, or mutagenic SMPs in renewable/reused water supplies must be determined and controlled...
January 9, 2017: Journal of Proteome Research
https://www.readbyqxmd.com/read/28063283/microbial-community-redundancy-in-anaerobic-digestion-drives-process-recovery-after-salinity-exposure
#18
Jo De Vrieze, Marlies E R Christiaens, Diego Walraedt, Arno Devooght, Umer Zeeshan Ijaz, Nico Boon
Anaerobic digestion of high-salinity wastewaters often results in process inhibition due to the susceptibility of the methanogenic archaea. The ability of the microbial community to deal with increased salinity levels is of high importance to ensure process perseverance or recovery after failure. The exact strategy of the microbial community to ensure process endurance is, however, often unknown. In this study, we investigated how the microbial community is able to recover process performance following a disturbance through the application of high-salinity molasses wastewater...
December 26, 2016: Water Research
https://www.readbyqxmd.com/read/28063197/aerobic-metabolism-in-the-genus-lactobacillus-impact-on-stress-response-and-potential-applications-in-the-food-industry
#19
REVIEW
Teresa Zotta, Eugenio Parente, Annamaria Ricciardi
This review outlines the recent advances in the knowledge on aerobic and respiratory growth of lactic acid bacteria, focusing on the features of respiration-competent lactobacilli. The species of the genus Lactobacillus have been traditionally classified as oxygen tolerant anaerobes, but it has been demonstrated that several strains are able to use oxygen as a substrate in reactions mediated by flavin oxidases and, in some cases, to synthesize a minimal respiratory chain. The occurrence of genes related to aerobic and respiratory metabolism and to oxidative stress response apparently correlates with the taxonomic position of lactobacilli...
January 7, 2017: Journal of Applied Microbiology
https://www.readbyqxmd.com/read/28049838/insights-into-the-lifestyle-of-uncultured-bacterial-natural-product-factories-associated-with-marine-sponges
#20
Gerald Lackner, Eike Edzard Peters, Eric J N Helfrich, Jörn Piel
The as-yet uncultured filamentous bacteria "Candidatus Entotheonella factor" and "Candidatus Entotheonella gemina" live associated with the marine sponge Theonella swinhoei Y, the source of numerous unusual bioactive natural products. Belonging to the proposed candidate phylum "Tectomicrobia," Candidatus Entotheonella members are only distantly related to any cultivated organism. The Ca E. factor has been identified as the source of almost all polyketide and modified peptides families reported from the sponge host, and both Ca Entotheonella phylotypes contain numerous additional genes for as-yet unknown metabolites...
January 17, 2017: Proceedings of the National Academy of Sciences of the United States of America
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