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https://www.readbyqxmd.com/read/28724067/multitrait-random-regression-or-simple-repeatability-model-in-high-throughput-phenotyping-data-improve-genomic-prediction-for-wheat-grain-yield
#1
Jin Sun, Jessica E Rutkoski, Jesse A Poland, José Crossa, Jean-Luc Jannink, Mark E Sorrells
High-throughput phenotyping (HTP) platforms can be used to measure traits that are genetically correlated with wheat ( L.) grain yield across time. Incorporating such secondary traits in the multivariate pedigree and genomic prediction models would be desirable to improve indirect selection for grain yield. In this study, we evaluated three statistical models, simple repeatability (SR), multitrait (MT), and random regression (RR), for the longitudinal data of secondary traits and compared the impact of the proposed models for secondary traits on their predictive abilities for grain yield...
July 2017: Plant Genome
https://www.readbyqxmd.com/read/28720703/canopy-structure-drives-orangutan-habitat-selection-in-disturbed-bornean-forests
#2
Andrew B Davies, Marc Ancrenaz, Felicity Oram, Gregory P Asner
The conservation of charismatic and functionally important large species is becoming increasingly difficult. Anthropogenic pressures continue to squeeze available habitat and force animals into degraded and disturbed areas. Ensuring the long-term survival of these species requires a well-developed understanding of how animals use these new landscapes to inform conservation and habitat restoration efforts. We combined 3 y of highly detailed visual observations of Bornean orangutans with high-resolution airborne remote sensing (Light Detection and Ranging) to understand orangutan movement in disturbed and fragmented forests of Malaysian Borneo...
July 18, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28714129/coevolution-between-flight-morphology-vertical-stratification-and-sexual-dimorphism-what-can-we-learn-from-tropical-butterflies
#3
M B Graça, P A C L Pequeno, E Franklin, J W Morais
Occurrence patterns are partly shaped by the affinity of species with habitat conditions. For winged organisms, flight-related attributes are vital for ecological performance. However, due to the different reproductive roles of each sex, we expect divergence in flight energy budget, and consequently different selection responses between sexes. We used tropical frugivorous butterflies as models to investigate coevolution between flight morphology, sex dimorphism and vertical stratification. We studied 94 species of Amazonian fruit-feeing butterflies sampled in seven sites across 3341 ha...
July 17, 2017: Journal of Evolutionary Biology
https://www.readbyqxmd.com/read/28709096/extensive-green-roof-co2-exchange-and-its-seasonal-variation-quantified-by-eddy-covariance-measurements
#4
Jannik Heusinger, Stephan Weber
The CO2 surface-atmosphere exchange of an unirrigated, extensive green roof in Berlin, Germany was measured by means of the eddy covariance method over a full annual cycle. The present analysis focusses on the cumulative green roof net ecosystem exchange of CO2 (NEE), on its seasonal variation and on green roof physiological characteristics by applying a canopy (A-gs) model. The green roof was a carbon sink with an annual cumulative NEE of -313gCO2m(-2)year(-)(1), equivalent to -85gCm(-2)year(-)(1). Three established CO2 flux gap-filling methods were applied to estimate NEE and to study the performance during different meteorological situations...
July 11, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28708294/the-influence-of-species-density-and-diversity-of-macroalgal-aggregations-on-microphytobenthic-settlement
#5
Schery Umanzor, Lydia Ladah, José A Zertuche-González
Intertidal macroalgae can modulate their biophysical environment by ameliorating physical conditions and creating habitats. Exploring how seaweed aggregations made up of different species at different densities modify the local environment may help explain how associated organisms respond to the attenuation of extreme physical conditions. Using Silvetia compressa, Chondracanthus canaliculatus and Pyropia perforata, we constructed monocultures representing the leathery, corticated and foliose functional-forms as well as a mixed tri-culture assemblage including the former three, at four different densities...
July 14, 2017: Journal of Phycology
https://www.readbyqxmd.com/read/28706573/the-effects-of-catchment-and-riparian-forest-quality-on-stream-environmental-conditions-across-a-tropical-rainforest-and-oil-palm-landscape-in-malaysian-borneo
#6
Sarah H Luke, Holly Barclay, Kawi Bidin, Vun Khen Chey, Robert M Ewers, William A Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C Turner, Rory P D Walsh, David C Aldridge
Freshwaters provide valuable habitat and important ecosystem services but are threatened worldwide by habitat loss and degradation. In Southeast Asia, rainforest streams are particularly threatened by logging and conversion to oil palm, but we lack information on the impacts of this on freshwater environmental conditions, and the relative importance of catchment versus riparian-scale disturbance. We studied 16 streams in Sabah, Borneo, including old-growth forest, logged forest, and oil palm sites. We assessed forest quality in riparian zones and across the whole catchment and compared it with stream environmental conditions including water quality, structural complexity, and organic inputs...
June 2017: Ecohydrology: Ecosystems, Land and Water Process Interactions, Ecohydrogeomorphology
https://www.readbyqxmd.com/read/28698523/assessing-the-potential-of-land-use-modification-to-mitigate-ambient-no%C3%A2-and-its-consequences-for-respiratory-health
#7
Meenakshi Rao, Linda A George, Vivek Shandas, Todd N Rosenstiel
Understanding how local land use and land cover (LULC) shapes intra-urban concentrations of atmospheric pollutants-and thus human health-is a key component in designing healthier cities. Here, NO₂ is modeled based on spatially dense summer and winter NO₂ observations in Portland-Hillsboro-Vancouver (USA), and the spatial variation of NO₂ with LULC investigated using random forest, an ensemble data learning technique. The NO2 random forest model, together with BenMAP, is further used to develop a better understanding of the relationship among LULC, ambient NO₂ and respiratory health...
July 10, 2017: International Journal of Environmental Research and Public Health
https://www.readbyqxmd.com/read/28698464/leaf-area-index-estimation-using-chinese-gf-1-wide-field-view-data-in-an-agriculture-region
#8
Xiangqin Wei, Xingfa Gu, Qingyan Meng, Tao Yu, Xiang Zhou, Zheng Wei, Kun Jia, Chunmei Wang
Leaf area index (LAI) is an important vegetation parameter that characterizes leaf density and canopy structure, and plays an important role in global change study, land surface process simulation and agriculture monitoring. The wide field view (WFV) sensor on board the Chinese GF-1 satellite can acquire multi-spectral data with decametric spatial resolution, high temporal resolution and wide coverage, which are valuable data sources for dynamic monitoring of LAI. Therefore, an automatic LAI estimation algorithm for GF-1 WFV data was developed based on the radiative transfer model and LAI estimation accuracy of the developed algorithm was assessed in an agriculture region with maize as the dominated crop type...
July 8, 2017: Sensors
https://www.readbyqxmd.com/read/28698237/maize-yabby-genes-drooping-leaf1-and-drooping-leaf2-regulate-plant-architecture
#9
Josh Strable, Jason G Wallace, Erica Unger-Wallace, Sarah Briggs, Peter Bradbury, Edward S Buckler, Erik Vollbrecht
Leaf architecture directly influences canopy structure, consequentially affecting yield. We discovered a maize (Zea mays) mutant with aberrant leaf architecture, which we named drooping leaf1 (drl1). Pleiotropic mutations in drl1 affect leaf length and width, leaf angle, and internode length and diameter. These phenotypes are enhanced by natural variation at the drl2 enhancer locus, including reduced expression of the drl2-Mo17 allele in the Mo17 inbred. A second drl2 allele, produced by transposon mutagenesis, interacted synergistically with drl1 mutants and reduced drl2 transcript levels...
July 11, 2017: Plant Cell
https://www.readbyqxmd.com/read/28694843/quantifying-pruning-impacts-on-olive-tree-architecture-and-annual-canopy-growth-by-using-uav-based-3d-modelling
#10
F M Jiménez-Brenes, F López-Granados, A I de Castro, J Torres-Sánchez, N Serrano, J M Peña
BACKGROUND: Tree pruning is a costly practice with important implications for crop harvest and nutrition, pest and disease control, soil protection and irrigation strategies. Investigations on tree pruning usually involve tedious on-ground measurements of the primary tree crown dimensions, which also might generate inconsistent results due to the irregular geometry of the trees. As an alternative to intensive field-work, this study shows a innovative procedure based on combining unmanned aerial vehicle (UAV) technology and advanced object-based image analysis (OBIA) methodology for multi-temporal three-dimensional (3D) monitoring of hundreds of olive trees that were pruned with three different strategies (traditional, adapted and mechanical pruning)...
2017: Plant Methods
https://www.readbyqxmd.com/read/28692901/water-or-sediment-partitioning-the-role-of-water-column-and-sediment-chemistry-as-drivers-of-macroinvertebrate-communities-in-an-austral-south-african-stream
#11
Tatenda Dalu, Ryan J Wasserman, Jonathan D Tonkin, Tongayi Mwedzi, Mandla L Magoro, Olaf L F Weyl
Water pollution is a critical management issue, with many rivers and streams draining urban areas being polluted by the disposal of untreated solid waste and wastewater discharge, storm water and agricultural runoff. This has implications for biodiversity, and many rivers in the developing world are now considered compromised. We investigated benthic macroinvertebrate community structure and composition in relation to physico-chemical conditions of the water column and sediments. The study was conducted in an Austral catchment subject to both urban and agricultural pollutants in two different seasons...
July 7, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28690803/deriving-a-light-use-efficiency-estimation-algorithm-using-in%C3%A2-situ-hyperspectral-and-eddy-covariance-measurements-for-a-maize-canopy-in-northeast-china
#12
Feng Zhang, Guangsheng Zhou
We estimated the light use efficiency (LUE) via vegetation canopy chlorophyll content (CCCcanopy) based on in situ measurements of spectral reflectance, biophysical characteristics, ecosystem CO 2 fluxes and micrometeorological factors over a maize canopy in Northeast China. The results showed that among the common chlorophyll-related vegetation indices (VIs), CCCcanopy had the most obviously exponential relationships with the red edge position (REP) (R(2) = .97, p < .001) and normalized difference vegetation index (NDVI) (R(2) = ...
July 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28690794/an-evaluation-of-semi-automated-methods-for-collecting-ecosystem-level-data-in-temperate-marine-systems
#13
Kingsley J Griffin, Luke H Hedge, Manuel González-Rivero, Ove I Hoegh-Guldberg, Emma L Johnston
Historically, marine ecologists have lacked efficient tools that are capable of capturing detailed species distribution data over large areas. Emerging technologies such as high-resolution imaging and associated machine-learning image-scoring software are providing new tools to map species over large areas in the ocean. Here, we combine a novel diver propulsion vehicle (DPV) imaging system with free-to-use machine-learning software to semi-automatically generate dense and widespread abundance records of a habitat-forming algae over ~5,000 m(2) of temperate reef...
July 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28690793/postfire-soil-water-repellency-in-pi%C3%A3-on-juniper-woodlands-extent-severity-and-thickness-relative-to-ecological-site-characteristics-and-climate
#14
Daniel L Zvirzdin, Bruce A Roundy, Nicholas S Barney, Steven L Petersen, Val J Anderson, Matthew D Madsen
Wildfires can create or intensify water repellency in soil, limiting the soil's capacity to wet and retain water. The objective of this research was to quantify soil water repellency characteristics within burned piñon-juniper woodlands and relate this information to ecological site characteristics. We sampled soil water repellency across forty-one 1,000 m(2) study plots within three major wildfires that burned in piñon-juniper woodlands. Water repellency was found to be extensive-present at 37% of the total points sampled-and strongly related to piñon-juniper canopy cover...
July 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28687779/potential-risk-of-re-emergence-of-urban-transmission-of-yellow-fever-virus-in-brazil-facilitated-by-competent-aedes-populations
#15
Dinair Couto-Lima, Yoann Madec, Maria Ignez Bersot, Stephanie Silva Campos, Monique de Albuquerque Motta, Flávia Barreto Dos Santos, Marie Vazeille, Pedro Fernando da Costa Vasconcelos, Ricardo Lourenço-de-Oliveira, Anna-Bella Failloux
Yellow fever virus (YFV) causing a deadly viral disease is transmitted by the bite of infected mosquitoes. In Brazil, YFV is restricted to a forest cycle maintained between non-human primates and forest-canopy mosquitoes, where humans can be tangentially infected. Since late 2016, a growing number of human cases have been reported in Southeastern Brazil at the gates of the most populated areas of South America, the Atlantic coast, with Rio de Janeiro state hosting nearly 16 million people. We showed that the anthropophilic mosquitoes Aedes aegypti and Aedes albopictus as well as the YFV-enzootic mosquitoes Haemagogus leucocelaenus and Sabethes albiprivus from the YFV-free region of the Atlantic coast were highly susceptible to American and African YFV strains...
July 7, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28686298/predatory-birds-and-ants-partition-caterpillar-prey-by-body-size-and-diet-breadth
#16
M S Singer, R E Clark, I H Lichter-Marck, E R Johnson, K A Mooney
1.The effects of predator assemblages on herbivores are predicted to depend critically on predator-predator interactions and the extent to which predators partition prey resources. The role of prey heterogeneity in generating such multiple predator effects has received limited attention. 2.Vertebrate and arthropod insectivores constitute two co-dominant predatory taxa in many ecosystems, and the emergent properties of their joint effects on insect herbivores inform theory on multiple predator effects as well as biological control of insect herbivores...
July 7, 2017: Journal of Animal Ecology
https://www.readbyqxmd.com/read/28679727/exposure-to-the-leaf-litter-microbiome-of-healthy-adults-protects-seedlings-from-pathogen-damage
#17
Natalie Christian, Edward Allen Herre, Luis C Mejia, Keith Clay
It is increasingly recognized that microbiota affect host health and physiology. However, it is unclear what factors shape microbiome community assembly in nature, and how microbiome assembly can be manipulated to improve host health. All plant leaves host foliar endophytic fungi, which make up a diverse, environmentally acquired fungal microbiota. Here, we experimentally manipulated assembly of the cacao tree (Theobroma cacao) fungal microbiome in nature and tested the effect of assembly outcome on host health...
July 12, 2017: Proceedings. Biological Sciences
https://www.readbyqxmd.com/read/28676816/the-effect-of-spectral-quality-on-daily-patterns-of-gas-exchange-biomass-gain-and-water-use-efficiency-in-tomatoes-and-lisianthus-an-assessment-of-whole-plant-measurements
#18
Jason Lanoue, Evangelos D Leonardos, Xiao Ma, Bernard Grodzinski
Advancements in light-emitting diode (LED) technology have made them a viable alternative to current lighting systems for both sole and supplemental lighting requirements. Understanding how wavelength specific LED lighting can affect plants is thus an area of great interest. Much research is available on the wavelength specific responses of leaves from multiple crops when exposed to long-term wavelength specific lighting. However, leaf measurements do not always extrapolate linearly to the complexities which are found within a whole plant canopy, namely mutual shading and leaves of different ages...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28676810/evaluating-spatially-resolved-influence-of-soil-and-tree-water-status-on-quality-of-european-plum-grown-in-semi-humid-climate
#19
Jana Käthner, Alon Ben-Gal, Robin Gebbers, Aviva Peeters, Werner B Herppich, Manuela Zude-Sasse
In orchards, the variations of fruit quality and its determinants are crucial for resource effective measures. In the present study, a drip-irrigated plum production (Prunus domestica L. "Tophit plus"/Wavit) located in a semi-humid climate was studied. Analysis of the apparent electrical conductivity (ECa) of soil showed spatial patterns of sand lenses in the orchard. Water status of sample trees was measured instantaneously by means of leaf water potential, Ψleaf [MPa], and for all trees by thermal imaging of canopies and calculation of the crop water stress index (CWSI)...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28676460/nutrigenomics-in-cancer-revisiting-the-effects-of-natural-compounds
#20
REVIEW
Cornelia Braicu, Nikolay Mehterov, Boyan Vladimirov, Victoria Sarafian, Seyed Nabavi, Atanas G Atanasov, Ioana Berindan-Neagoe
Nutrigenomics effects have an important role in the manipulation of dietary components for human benefit, particularly in cancer prevention or treatment. The impact of dietary components, including phytochemicals, is largely studied by nutrigenomics, looking at the gene expression and molecular mechanisms interacting with bioactive compounds and nutrients, based on new 'omics' technologies. The high number of preclinical studies proves the relevant role of nutrigenomics in cancer management. By deciphering the network of nutrient-gene connections associated with cancer, relevant data will be transposed as therapeutic interventions for this devastating pathology and for fulfilling the concept of personalized nutrition...
July 1, 2017: Seminars in Cancer Biology
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