keyword
https://read.qxmd.com/read/38571659/comparison-of-left-and-right-sided-colorectal-cancer-to-explore-prognostic-signatures-related-to-pyroptosis
#1
JOURNAL ARTICLE
Shibi Luo, Shenggang Cai, Rong Zhao, Lin Xu, Xiaolong Zhang, Xiaolei Gong, Zhiping Zhang, Qiyu Liu
BACKGROUND: Colorectal cancer (CRC) is one of the most common malignancies, and pyroptosis exerts an immunoregulatory role in CRC. Although the location of the primary tumor is a prognostic factor for patients with CRC, the mechanisms of pyroptosis in left- and right-sided CRC remain unclear. METHODS: Expression and clinical data were collected from The Cancer Genome Atlas and Gene Expression Omnibus databases. Differences in clinical characteristics, immune cell infiltration, and somatic mutations between left- and right-sided CRC were then compared...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38225934/aav-based-gene-therapy-ameliorated-cns-specific-gpi-defect-in-mouse-models
#2
JOURNAL ARTICLE
Yoshiko Murakami, Saori Umeshita, Kae Imanishi, Yoshichika Yoshioka, Akinori Ninomiya, Takehiko Sunabori, Shibi Likhite, Masato Koike, Kathrin C Meyer, Taroh Kinoshita
Thirty genes are involved in the biosynthesis and modification of glycosylphosphatidylinositol (GPI)-anchored proteins, and defects in these genes cause inherited GPI deficiency (IGD). PIGA is X-linked and involved in the first step of GPI biosynthesis, and only males are affected by variations in this gene. The main symptoms of IGD are neurological abnormalities, such as developmental delay and seizures. There is no effective treatment at present. We crossed Nestin - Cre mice with Piga -floxed mice to generate CNS-specific Piga knockout (KO) mice...
March 14, 2024: Molecular Therapy. Methods & Clinical Development
https://read.qxmd.com/read/38172244/electron-donating-functional-groups-strengthen-ligand-induced-chiral-imprinting-on-cspbbr-3-quantum-dots
#3
JOURNAL ARTICLE
Wiley A Dunlap-Shohl, Nazifa Tabassum, Peng Zhang, Elizabeth Shiby, David N Beratan, David H Waldeck
Chiral perovskite nanoparticles and films are promising for integration in emerging spintronic and optoelectronic technologies, yet few design rules exist to guide the development of chiral material properties. The chemical space of potential building blocks for these nanostructures is vast, and the mechanisms through which organic ligands can impart chirality to the inorganic perovskite lattice are not well understood. In this work, we investigate how the properties of chiral ammonium ligands, the most common organic ligand type used with perovskites, affect the circular dichroism of strongly quantum confined CsPbBr3 nanocrystals...
January 3, 2024: Scientific Reports
https://read.qxmd.com/read/38022161/an-in-vitro-comparison-of-shear-bond-strength-for-heated-composite-resin-with-three-conventional-luting-cements
#4
JOURNAL ARTICLE
Prasad Aravind, Abhinav Mohan Kallat, Prem Kumar Sivabalan, Shibi Mathew Velurethu, Nirosha Vijayan, Cimmy Augustine
UNLABELLED: Background : This research set out to collate and contrast three popular luting agents-heated composite resin, resin-modified glass ionomer cement (RMGIC), and resin cement, and light-cure resin cement by measuring their shear bond strengths. Shear bond strength was measured between lithium disilicate discs (IPS E-max) and specimens luted with heated composite resin (Tetric N-Ceram, Ivoclar Vivadent), self-adhesive resin cement (3M ESPE Rely X U200), light-activated resin cement (Rely X Veneer cement), and resin-modified glass ionomer cement (Fuji Plus, GC America)...
October 2023: Curēus
https://read.qxmd.com/read/37746244/in-depth-comparison-of-anc80l65-and-aav9-retinal-targeting-and-characterization-of-cross-reactivity-to-multiple-aav-serotypes-in-humans
#5
JOURNAL ARTICLE
Maura K Schwartz, Shibi Likhite, Tatyana A Vetter, Megan C Baird, Vicki McGovern, Andrea Sierra Delgado, Tom Mendel, Arthur Burghes, Kathrin C Meyer
Anc80L65 is a synthetic, ancestral adeno-associated virus that has high tropism toward retinal photoreceptors after subretinal injection in mice and non-human primates. We characterized, for the first time, the post-intravitreal cell-specific transduction profile of Anc80L65 compared with AAV9. Here we use Anc80L65 and AAV9 to intravitreally deliver a copy of the gene encoding GFP into WT C57Bl/6J mice. GFP expression was driven by one of two clinically relevant promoters, chicken β actin (CB) or truncated MECP2 (P546)...
September 14, 2023: Molecular Therapy. Methods & Clinical Development
https://read.qxmd.com/read/37549958/significance-and-prognostication-of-mediastinal-lymph-node-enlargement-on-chest-computed-tomography-among-adult-indigenous-australians
#6
JOURNAL ARTICLE
Arockia X Doss, Timothy P Howarth, Lai Ng, Shibi A Doss, Subash Shanthakumar Heraganahally
INTRODUCTION: There is a lack of data on chest computed tomography (CT) findings on mediastinal lymph node enlargement (MLE), including normal size threshold of less than 10 or 15 mm for MLE among Indigenous Australians. In this study, we assessed the significance and the applicability of the current guidelines for the threshold for abnormal MLE among adult Indigenous Australians. METHODS: Patients who underwent chest CT between 2012 and 2020 among those referred to undergo lung function test (spirometry) were assessed for the presence of MLE which were classified as Group A (no measurable nodes), Group B (<10 mm), Group C (≥10 to 14...
August 7, 2023: Journal of Medical Imaging and Radiation Oncology
https://read.qxmd.com/read/37481701/novel-mecp2-gene-therapy-is-effective-in-a-multicenter-study-using-two-mouse-models-of-rett-syndrome-and-is-safe-in-non-human-primates
#7
JOURNAL ARTICLE
Samantha Powers, Shibi Likhite, Kamal K Gadalla, Carlos J Miranda, Amy J Huffenberger, Cassandra Dennys, Kevin D Foust, Pablo Morales, Christopher R Pierson, Federica Rinaldi, Stephanie Perry, Brad Bolon, Nicolas Wein, Stuart Cobb, Brian K Kaspar, Kathrin C Meyer
The AAV9 gene therapy vector presented in this study is safe in mice and non-human primates and highly efficacious without causing overexpression toxicity, a major challenge for clinical translation of Rett syndrome gene therapy vectors to date. Our team designed a new truncated methyl-CpG-binding protein 2 (MECP2) promoter allowing widespread expression of MECP2 in mice and non-human primates after a single injection into the cerebrospinal fluid without causing overexpression symptoms up to 18 months after injection...
July 22, 2023: Molecular Therapy
https://read.qxmd.com/read/37389383/reasons-behind-patients-defaulting-from-elective-pediatric-urology-procedures-at-a-tertiary-private-teaching-hospital-in-south-india
#8
JOURNAL ARTICLE
Athiyaman Rani Manjarie, Shibi Raj, Ramesh Babu
AIM: The aims of the study are to audit the default rate of the provisional date of elective surgery in pediatric urology private practice and to study the factors involved in the postponement of elective operation dates by patients. PATIENTS AND METHODS: The audit involved analysis of reasons behind patients defaulting from elective pediatric urology procedures between January 2019 and December 2019 at a tertiary private teaching hospital in South India. The details were obtained from the outpatient register kept for elective booking...
2023: Journal of Indian Association of Pediatric Surgeons
https://read.qxmd.com/read/37372153/in-vitro-modeling-as-a-tool-for-testing-therapeutics-for-spinal-muscular-atrophy-and-ighmbp2-related-disorders
#9
JOURNAL ARTICLE
Julieth Andrea Sierra-Delgado, Shrestha Sinha-Ray, Abuzar Kaleem, Meysam Ganjibakhsh, Mohini Parvate, Samantha Powers, Xiaojin Zhang, Shibi Likhite, Kathrin Meyer
Spinal Muscular Atrophy (SMA) is the leading genetic cause of infant mortality. The most common form of SMA is caused by mutations in the SMN1 gene, located on 5q (SMA). On the other hand, mutations in IGHMBP2 lead to a large disease spectrum with no clear genotype-phenotype correlation, which includes Spinal Muscular Atrophy with Muscular Distress type 1 (SMARD1), an extremely rare form of SMA, and Charcot-Marie-Tooth 2S (CMT2S). We optimized a patient-derived in vitro model system that allows us to expand research on disease pathogenesis and gene function, as well as test the response to the AAV gene therapies we have translated to the clinic...
June 16, 2023: Biology
https://read.qxmd.com/read/37294438/identification-of-quantitative-trait-loci-and-candidate-genes-for-seed-folate-content-in-soybean
#10
JOURNAL ARTICLE
Kwadwo Gyapong Agyenim-Boateng, Shengrui Zhang, Rongzhe Gu, Shibi Zhang, Jie Qi, Muhammad Azam, Caiyou Ma, Yecheng Li, Yue Feng, Yitian Liu, Jing Li, Bin Li, Lijuan Qiu, Junming Sun
From 61 QTL mapped, a stable QTL cluster of 992 kb was discovered on chromosome 5 for folate content and a putative candidate gene, Glyma.05G237500, was identified. Folate (vitamin B9) is one of the most essential micronutrients whose deficiencies lead to various health defects in humans. Herein, we mapped the quantitative trait loci (QTL) underlying seed folate content in soybean using recombinant inbred lines developed from cultivars, ZH35 and ZH13, across four environments. We identified 61 QTL on 12 chromosomes through composite interval mapping, with phenotypic variance values ranging from 1...
June 9, 2023: TAG. Theoretical and Applied Genetics. Theoretische und Angewandte Genetik
https://read.qxmd.com/read/37288650/transcutaneous-electrical-stimulation-for-gastrointestinal-motility-disorders
#11
REVIEW
Gengqing Song, Sophie Trujillo, Yuhan Fu, Fahmi Shibi, Jiande Chen, Ronnie Fass
BACKGROUND/PURPOSE: Gastrointestinal (GI) dysmotility is categorized by muscle or nerve dysfunctions in any portion of the GI tract, which leads to abnormalities in GI motor and sensory function. Symptoms may vary depending on the organ affected and can be debilitating. Treatment usually involves diet and lifestyle changes. Pharmacotherapy is limited in effectiveness with various side effects. Transcutaneous electrical stimulation (TES), a noninvasive, needleless technique that provides electrical stimulation using cutaneous non-needle electrodes, has become increasingly popular...
June 8, 2023: Neurogastroenterology and Motility: the Official Journal of the European Gastrointestinal Motility Society
https://read.qxmd.com/read/37169043/the-concept-of-big-four-road-map-from-snakebite-epidemiology-to-antivenom-efficacy
#12
REVIEW
Gayathri Gopal, Shibi Muralidar, Diwahar Prakash, Abishek Kamalakkannan, Srichandrasekar Thuthikkadu Indhuprakash, Diraviyam Thirumalai, Senthil Visaga Ambi
Snake envenomation is a life-threatening disease caused by the injection of venom toxins from the venomous snake bite. Snakebite is often defined as the occupational or domestic hazard mostly affecting the rural population. India experiences a high number of envenoming cases and fatality due to the nation's diversity in inhabiting venomous snakes. The Indian Big Four snakes namely Russell's viper (Daboia russelii), spectacled cobra (Naja naja), common krait (Bungarus caeruleus), and saw-scaled viper (Echis carinatus) are responsible for majority of the snake envenoming cases and death...
July 1, 2023: International Journal of Biological Macromolecules
https://read.qxmd.com/read/37035740/early-postnatal-administration-of-an-aav9-gene-therapy-is-safe-and-efficacious-in-cln3-disease
#13
JOURNAL ARTICLE
Tyler B Johnson, Jon J Brudvig, Shibi Likhite, Melissa A Pratt, Katherine A White, Jacob T Cain, Clarissa D Booth, Derek J Timm, Samantha S Davis, Brandon Meyerink, Ricardo Pineda, Cassandra Dennys-Rivers, Brian K Kaspar, Kathrin Meyer, Jill M Weimer
CLN3 disease, caused by biallelic mutations in the CLN3 gene, is a rare pediatric neurodegenerative disease that has no cure or disease modifying treatment. The development of effective treatments has been hindered by a lack of etiological knowledge, but gene replacement has emerged as a promising therapeutic platform for such disorders. Here, we utilize a mouse model of CLN3 disease to test the safety and efficacy of a cerebrospinal fluid-delivered AAV9 gene therapy with a study design optimized for translatability...
2023: Frontiers in Genetics
https://read.qxmd.com/read/36982654/prevalence-of-neutralizing-antibodies-against-adeno-associated-virus-serotypes-1-2-and-9-in-non-injected-latin-american-patients-with-heart-failure-anvias-study
#14
JOURNAL ARTICLE
Julieth A Sierra-Delgado, Shibi Likhite, Paula K Bautista, Sergio A Gómez-Ochoa, Luis E Echeverría, Elizabeth Guío, Clara Vargas, Norma C Serrano, Kathrin C Meyer, Melvin Y Rincon
Neutralizing antibody (NAb) activity against the viral capsid of adeno-associated viral (AAV) vectors decreases transduction efficiency, thus limiting transgene expression. Several reports have mentioned a variation in NAb prevalence according to age, AAV serotype, and, most importantly, geographic location. There are currently no reports specifically describing the anti-AAV NAb prevalence in Latin America. Here, we describe the prevalence of NAb against different serotypes of AAV vectors (AAV1, AAV2, and AAV9) in Colombian patients with heart failure (HF) (referred to as cases) and healthy individuals (referred to as controls)...
March 14, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36776859/follicle-like-tertiary-lymphoid-structures-a-potential-biomarker-for-prognosis-and-immunotherapy-response-in-patients-with-laryngeal-squamous-cell-carcinoma
#15
JOURNAL ARTICLE
Haifeng Liang, Zhigang Zhang, Zhong Guan, Shibie Zheng, Jintao Lou, Wei Liu, Qian Cai, Yu Si
BACKGROUND: The maturity and spatial distribution of tertiary lymphoid structures (TLSs) vary dynamically within and between cancers, leading to a controversial role in cancer. We aimed to develop a simple morphology-based approach to identify the maturity of TLSs in laryngeal squamous cell carcinoma and examine their clinically relevant functional role. METHODS: TLSs were identified based on morphological features via hematoxylin and eosin (H&E) staining, and the accuracy was verified by multi-immunohistochemical analysis...
2023: Frontiers in Immunology
https://read.qxmd.com/read/36669885/astrocytes-transplanted-during-early-postnatal-development-integrate-mature-and-survive-long-term-in-mouse-cortex
#16
JOURNAL ARTICLE
Sabrina Chierzi, J Benjamin Kacerovsky, Albert Hk Fok, Sylvie Lahaie, Arielle Shibi-Rosen, W Todd Farmer, Keith K Murai
Astrocytes have complex structural, molecular, and physiological properties and form specialized microenvironments that support circuit-specific functions in the central nervous system. To better understand how astrocytes acquire their unique features, we transplanted immature mouse cortical astrocytes into the developing cortex of male and female mice and assessed their integration, maturation, and survival. Within days, transplanted astrocytes developed morphologies and acquired territories and tiling behavior typical of cortical astrocytes...
January 19, 2023: Journal of Neuroscience
https://read.qxmd.com/read/36476864/mechanisms-of-irf2bpl-related-disorders-and-identification-of-a-potential-therapeutic-strategy
#17
JOURNAL ARTICLE
Shrestha Sinha Ray, Debdeep Dutta, Cassandra Dennys, Samantha Powers, Florence Roussel, Pawel Lisowski, Petar Glažar, Xiaojin Zhang, Pipasha Biswas, Joseph R Caporale, Nikolaus Rajewsky, Marc Bickle, Nicolas Wein, Hugo J Bellen, Shibi Likhite, Paul C Marcogliese, Kathrin C Meyer
The recently discovered neurological disorder NEDAMSS is caused by heterozygous truncations in the transcriptional regulator IRF2BPL. Here, we reprogram patient skin fibroblasts to astrocytes and neurons to study mechanisms of this newly described disease. While full-length IRF2BPL primarily localizes to the nucleus, truncated patient variants sequester the wild-type protein to the cytoplasm and cause aggregation. Moreover, patient astrocytes fail to support neuronal survival in coculture and exhibit aberrant mitochondria and respiratory dysfunction...
December 6, 2022: Cell Reports
https://read.qxmd.com/read/36369162/sex-split-analysis-of-pathology-and-motor-behavioral-outcomes-in-a-mouse-model-of-cln8-batten-disease-reveals-an-increased-disease-burden-and-trajectory-in-female-cln8-mnd-mice
#18
JOURNAL ARTICLE
Andrew D Holmes, Katherine A White, Melissa A Pratt, Tyler B Johnson, Shibi Likhite, Kathrin Meyer, Jill M Weimer
BACKGROUND: CLN8-Batten disease (CLN8 disease) is a rare neurodegenerative disorder characterized phenotypically by progressive deterioration of motor and cognitive abilities, visual symptoms, epileptic seizures, and premature death. Mutations in CLN8 results in characteristic Batten disease symptoms and brain-wide pathology including accumulation of lysosomal storage material, gliosis, and neurodegeneration. Recent investigations of other subforms of Batten disease (CLN1, CLN3, CLN6) have emphasized the influence of biological sex on disease and treatment outcomes; however, little is known about sex differences in the CLN8 subtype...
November 11, 2022: Orphanet Journal of Rare Diseases
https://read.qxmd.com/read/36119201/drug-utilization-study-of-antiepileptic-drugs-in-the-pediatric-department-tertiary-care-hospital-bangalore-india
#19
JOURNAL ARTICLE
Zahra Khoshdel, Shibi Tomas, Marziye Jafari
Objective: The main objective of the present study is to find out the loose links between prescription of medication and its utilization in the pediatric department, especially with drugs that belong to the antiepileptic medication category. Methodology: This prospective observational study was carried out for 6 months in the Department of Pharmacy Practice, Tertiary Care Hospital, Bangalore. The study was conducted on 100 patients receiving antiepileptic medication...
June 2022: Journal of Family Medicine and Primary Care
https://read.qxmd.com/read/35893891/shibi-tea-adinandra-nitida-and-camellianin-a-alleviate-ccl-4-induced-liver-injury-in-c57bl-6j-mice-by-attenuation-of-oxidative-stress-inflammation-and-apoptosis
#20
JOURNAL ARTICLE
Ruohong Chen, Yingyi Lian, Shuai Wen, Qiuhua Li, Lingli Sun, Xingfei Lai, Zhenbiao Zhang, Junquan Zhu, Linsong Tang, Ji Xuan, Erdong Yuan, Shili Sun
Liver injury is a significant public health issue nowadays. Shibi tea is a non- Camellia tea prepared from the dried leaves of Adinandra nitida , one of the plants with the greatest flavonoid concentration, with Camellianin A (CA) being the major flavonoid. Shibi tea is extensively used in food and medicine and has been found to provide a variety of health advantages. The benefits of Shibi tea and CA in preventing liver injury have not yet been investigated. The aim of this study was to investigate the hepatoprotective effects of extract of Shibi tea (EST) and CA in mice with carbon tetrachloride (CCl4 )-induced acute liver injury...
July 24, 2022: Nutrients
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