keyword
https://read.qxmd.com/read/38652264/bacterial-discrimination-by-fourier-transform-infrared-spectroscopy-maldi-mass-spectrometry-and-whole-genome-sequencing
#1
JOURNAL ARTICLE
Rachel McGalliard, Howbeer Muhamadali, Najla AlMasoud, Sam Haldenby, Valeria Romero-Soriano, Ellie Allman, Yun Xu, Adam P Roberts, Steve Paterson, Enitan D Carrol, Royston Goodacre
Aim: Proof-of-concept study, highlighting the clinical diagnostic ability of FT-IR compared with MALDI-TOF MS, combined with WGS. Materials & methods: 104 pathogenic isolates of Neisseria meningitidis , Streptococcus pneumoniae , Streptococcus pyogenes and Staphylococcus aureus were analyzed. Results: Overall prediction accuracy was 99.6% in FT-IR and 95.8% in MALDI-TOF-MS. Analysis of N. meningitidis serogroups was superior in FT-IR compared with MALDI-TOF-MS. Phylogenetic relationship of S. pyogenes was similar by FT-IR and WGS, but not S...
April 23, 2024: Future Microbiology
https://read.qxmd.com/read/38650815/green-synthesis-of-molybdenum-nanoparticles-from-solanum-xanthocarpum-and-evaluation-of-their-antimicrobial-and-antioxidant-activity-against-multidrug-resistant-wound-isolates
#2
JOURNAL ARTICLE
Priyam Bharathidasan, Muthuvel Surya, P Geetha Sravanthy, Muthupandian Saravanan
INTRODUCTION: In recent years, antimicrobial drug resistance has emerged as a serious global public health concern, according to the World Health Organization data. The emergence of pathogens resistant to multiple drugs has been linked to an increase in morbidity and mortality from microbial infections. The study's main goal is to explore the efficacy of using Solanum xanthocarpum in the green synthesis of molybdenum nanoparticles (Mo NPs) for antibacterial and antioxidant properties...
March 2024: Curēus
https://read.qxmd.com/read/38650753/predicting-antibiotic-tolerance-in-hvkp-and-ckp-respiratory-infections-through-biofilm-formation-analysis-and-its-resistance-implications
#3
JOURNAL ARTICLE
Zhongwei Wen, Yiqiang Chen, Tangjuan Liu, Jiahui Han, Yuting Jiang, Ke Zhang
INTRODUCTION: Respiratory infections are a major global health concern, with Klebsiella pneumoniae standing out due to its evolving antibiotic resistance. This study compares the resistance profiles of hypervirulent Klebsiella pneumoniae (hvKP) and classical Klebsiella pneumoniae (cKP), aiming to shed light on their clinical implications. METHODS: We analyzed 86 cases, comprising 42 hvKP and 44 cKP strains, using comprehensive antimicrobial susceptibility testing and clinical data evaluation to assess antibiotic tolerance and resistance mechanisms...
2024: Infection and Drug Resistance
https://read.qxmd.com/read/38649138/austrian-syndrome-report-of-one-case-and-a-systematic-review-of-case-reports-new-insights
#4
REVIEW
Alpha Madu, Tochi Alex-Okoro, Abosede Okoduwa, James Cotton
OBJECTIVE: The objective of this review was to gain new insight into the rare condition, Austrian syndrome: the triad of endocarditis, meningitis, and pneumonia caused by Streptococcus pneumoniae. METHODS: A systematic review of case reports was conducted using the PRISMA guideline. Cases were rigorously screened to meet a set of well-defined inclusion criteria. Relevant data was aggregated and reported using descriptive statistics. RESULTS: Seventy-one cases from 69 case reports were included in the final review...
April 20, 2024: Clinical Medicine: Journal of the Royal College of Physicians of London
https://read.qxmd.com/read/38649113/comparative-performance-of-biofire-pneumonia-panel-and-standard-culture-based-methods-for-diagnosing-pneumonia-in-critically-ill-patients-impact-on-antibiotic-stewardship
#5
JOURNAL ARTICLE
Barnali Kakati, Rajender Singh, Garima Mittal, Nupur Koul
INTRODUCTION: Lower respiratory tract infections (LRTIs) are a common cause of morbidity and mortality worldwide. Accurate identification of the pathogens causing LRTIs is crucial for ensuring of diagnostic and antibiotic stewardship. The Biofire Pneumonia Panel (BFPP) is a molecular diagnostic test that allows rapid detection of various bacterial and viral pathogens. In this study, we compared the performance of BFPP with standard culture methods for the detection of pathogens. MATERIALS AND METHODS: Respiratory samples from 70 patient with suspected LRTIs were tested using both BFPP and standard culture methods...
April 20, 2024: Indian Journal of Medical Microbiology
https://read.qxmd.com/read/38648953/the-association-between-duration-of-antibiotics-and-infectious-complications-following-radical-cystectomy-analysis-of-the-2019-2021-nsqip-database
#6
JOURNAL ARTICLE
Rachel Passarelli, John Pfail, Alain Kaldany, Kevin Chua, Benjamin Lichtbroun, Hiren V Patel, Arnav Srivastava, David Golombos, Thomas L Jang, Vignesh T Packiam, Saum Ghodoussipour
OBJECTIVES: To identify the impact of the duration of peri-operative antibiotics on infectious complications following radical cystectomy. METHODS: The National Surgical Quality Improvement Project (NSQIP) targeted database was queried for patients undergoing radical cystectomy from 2019-2021. Baseline patient characteristics were collected. Antibiotic duration was classified as <24 hours (short), 24-72 hours (intermediate) or >72 hours (long). Infectious complication data was collected including surgical site infection (SSI), urinary tract infection (UTI), organ space infection, pneumonia, sepsis, and clostridium difficile infection up to 30 days after surgery...
April 20, 2024: Urology
https://read.qxmd.com/read/38647868/changing-patterns-of-organisms-causing-neonatal-sepsis-and-their-antimicrobial-sensitivity-profile-in-a-tertiary-center-a-prospective-study
#7
JOURNAL ARTICLE
Gayathiri Govindaraju, Balakrishnan Rajaiah, Srinivas Ramakrishnan, Deepak Thangaraju, Preethi Chandrasekar, Thangaraj Abiramalatha
OBJECTIVE: To identify the profile of organisms causing neonatal sepsis and their antibiotic susceptibility pattern in recent years. METHODS: In this prospective study, authors included neonates with blood culture proven sepsis. Antibiotic resistance patterns that were identified were extended spectrum β-lactamase, AmpC β-lactamase and possible carbapenamase producer. Xpert CARBA-R test was performed to identify genes causing carbapenem resistance. RESULTS: There were 210 neonates with 216 episodes of blood culture proven sepsis...
April 22, 2024: Indian Journal of Pediatrics
https://read.qxmd.com/read/38646911/invasive-pneumococcal-diseases-in-chinese-children-a-multicenter-hospital-based-active-surveillance-from-2019-2021
#8
JOURNAL ARTICLE
Xue Ning, Lianmei Li, Jing Liu, Fang Wang, Kun Tan, Wenhui Li, Kai Zhou, Shujun Jing, Aiwei Lin, Jing Bi, Shiyong Zhao, Huiling Deng, Chunhui Zhu, Shanshan Lv, Juan Li, Jun Liang, Qing Zhao, Yumin Wang, Biquan Chen, Liang Zhu, Guowu Shen, Jianlong Liu, Zhi Li, Jikui Deng, Xin Zhao, Mingfeng Shan, Yi Wang, Shihua Liu, Tingting Jiang, Xuexia Chen, Yufeng Zhang, Sha Cai, Lixue Wang, Xudong Lu, Jinghui Jiang, Fang Dong, Lan Ye, Jing Sun, Kaihu Yao, Yonghong Yang, Gang Liu
This study aimed to provide data for the clinical features of invasive pneumococcal disease (IPD) and the molecular characteristics of Streptococcus pneumoniae isolates from pediatric patients in China. We conducted a multi-center prospective study for IPD in 19 hospitals across China from January 2019 to December 2021. Data of demographic characteristics, risk factors for IPD, death, and disability was collected and analyzed. Serotypes, antibiotic susceptibility, and multi-locus sequence typing (MLST) of pneumococcal isolates were also detected...
April 22, 2024: Emerging Microbes & Infections
https://read.qxmd.com/read/38646622/evaluation-of-the-in-vitro-susceptibility-of-clinical-isolates-of-ndm-producing-klebsiella-pneumoniae-to-new-antibiotics-included-in-a-treatment-regimen-for-infections
#9
JOURNAL ARTICLE
Natalia Słabisz, Patrycja Leśnik, Jarosław Janc, Miłosz Fidut, Marzenna Bartoszewicz, Ruth Dudek-Wicher, Urszula Nawrot
BACKGROUND: Due to the growing resistance to routinely used antibiotics, the search for new antibiotics or their combinations with effective inhibitors against multidrug-resistant microorganisms is ongoing. In our study, we assessed the in vitro drug susceptibility of Klebsiella pneumoniae strains producing New Delhi metallo-β-lactamases (NDM) to antibiotics included in the Infectious Diseases Society of America (IDSA) and European Society of Clinical Microbiology and Infectious Diseases (ESCMID) recommendations...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38646406/no-difference-in-the-pathogenic-microorganisms-among-different-types-of-anorectal-abscesses-a-retrospective-study
#10
JOURNAL ARTICLE
Jun Du, Yangyang Miao, Shuguang Zhen, Qingyun You, Jing Guan, Zongqi He
OBJECTIVE:  There is limited data on the pathogenic microorganisms associated with anorectal abscesses. The purpose of this study was to retrospectively analyze the types and quantities of pathogenic microorganisms in the pus cultures of patients with anorectal abscesses and to explore the correlation between pathogenic microorganisms and types of anorectal abscesses. METHODS:  A retrospective analysis was conducted on the microbiological data of 517 inpatient surgical patients with anorectal abscesses treated at a single center from January 2017 to December 2021...
March 2024: Curēus
https://read.qxmd.com/read/38646316/isolation-of-secondary-metabolites-from-marine-actinobacterium-of-microbispora-sp-t3s11-and-their-antibacterial-activities
#11
JOURNAL ARTICLE
Aardra B S, Vasugi Suresh, Menaka S, Pitchiah Sivaperumal
Introduction Marine actinobacteria are promising sources of novel bioactive compounds due to their distinct ecological niches and diverse secondary metabolite production capabilities. Among these,  Microbispora  sp. T3S11 is notable for its unique spore chain structure, which allows for both morphological and genetic identification. Despite its potential, little is understood about the secondary metabolites produced by this strain. In this study, we hope to fill this gap by extracting and analyzing the antibacterial activities of secondary metabolites from  Microbispora  sp...
March 2024: Curēus
https://read.qxmd.com/read/38646237/antibiotic-resistance-trends-among-enterobacteriaceae-in-saudi-arabia-a-systematic-review
#12
REVIEW
Albandari A Arafah
Antibiotic resistance is a global public health concern that poses a significant threat to the effective treatment of bacterial infections. Enterobacteriaceae , a family of gram-negative bacteria, are associated with a wide range of infections, including urinary tract infections, bloodstream infections, and respiratory tract infections. This systematic review aimed to examine the antibiotic resistance trend among Enterobacteriaceae in Saudi Arabia in the period between 2003 and 2023. Five databases (PubMed, Medline, Ovid, Scopus, and Cochrane) were searched using the keywords "Resistance AND Enterobacteriaceae AND Saudi Arabia" in the title and abstract...
March 2024: Curēus
https://read.qxmd.com/read/38646137/benefit-of-intrapleural-fibrinolytic-therapy-in-the-treatment-of-complicated-parapneumonic-effusion-and-empyema
#13
Takoua Merhabene, Souheil Zayet, Amira Jamoussi, Samia Ayed, Salwa Mansouri, Jalila Ben Khelil, Mohamed Besbes
Our study aimed to assess the benefit of intrapleural fibrinolysis before resorting to surgery to treat complicated parapneumonic effusion and empyema. We conducted a retrospective and descriptive study, including all patients hospitalized in the intensive care unit (ICU) of the Abderhaman Mami hospital, Tunisia for empyema treated with instillation of intrapleural fibrinolytic therapy between the 1st January 2000 and 31st December 2016. In all patients, empyema was diagnosed on clinical features, imaging findings (chest X-ray, thoracic echography and/or computed tomography (CT), and microbiological data...
2024: Pan African Medical Journal
https://read.qxmd.com/read/38645859/-carbapenemase-genes-virulence-genes-and-molecular-epidemiology-of-carbapenem-resistant-klebsiella-pneumoniae-derived-from-bloodstream-infections
#14
JOURNAL ARTICLE
Quanfeng Liao, Yu Yuan, Weili Zhang, Jin Deng, Mei Kang
OBJECTIVE: To investigate the clinical characteristics and molecular epidemiology of carbapenem-resistant Klebsiella pneumoniae (CRKP) isolated from patients with bloodstream infections in a large tertiary-care general hospital in Southwest China. METHODS: A total of 131 strains of non-repeating CRKP were collected from the blood cultures of patients who had bloodstream infections in 2015-2019. The strains were identified by VITEK-2, a fully automated microbial analyzer, and matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry...
March 20, 2024: Sichuan da Xue Xue Bao. Yi Xue Ban, Journal of Sichuan University. Medical Science Edition
https://read.qxmd.com/read/38645206/simultaneous-detection-of-pathogens-and-antimicrobial-resistance-genes-with-the-open-source-cloud-based-cz-id-pipeline
#15
Dan Lu, Katrina L Kalantar, Victoria T Chu, Abigail L Glascock, Estella S Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, Karyna Rosario, Jennifer Tang, Omar Valenzuela, Peter M Mourani, Amy J Pickering, Amogelang R Raphenya, Brian P Alcock, Andrew G McArthur, Charles R Langelier
Antimicrobial resistant (AMR) pathogens represent urgent threats to human health, and their surveillance is of paramount importance. Metagenomic next generation sequencing (mNGS) has revolutionized such efforts, but remains challenging due to the lack of open-access bioinformatics tools capable of simultaneously analyzing both microbial and AMR gene sequences. To address this need, we developed the Chan Zuckerberg ID (CZ ID) AMR module, an open-access, cloud-based workflow designed to integrate detection of both microbes and AMR genes in mNGS and whole-genome sequencing (WGS) data...
April 18, 2024: bioRxiv
https://read.qxmd.com/read/38642914/retrospective-analysis-of-pathogens-for-guided-creation-of-an-empiric-antibiotic-prescribing-pathway-empire
#16
JOURNAL ARTICLE
Lorraine A Todor, David M Hill
The objective of this study was to evaluate the susceptibilities of pathogens isolated from cultures within the first 7 days of admission to the burn center and in the absence of healthcare-associated infection risk factors (HAIRF) to determine if current empiric antibiotics can be narrowed for refinement of an empiric antibiotic prescribing pathway according to suspected source. A 3-year sample of patients and cultures was utilized in hopes of obtaining at least 30 isolates of the most common pathogens and their respective susceptibilities...
April 20, 2024: Journal of Burn Care & Research: Official Publication of the American Burn Association
https://read.qxmd.com/read/38641650/microbiological-features-of-drowning-associated-pneumonia-a-systematic-review-and-meta-analysis
#17
REVIEW
Vladimir L Cousin, Laure F Pittet
BACKGROUND: Drowning-associated pneumonia (DAP) is frequent in drowned patients, and possibly increases mortality. A better understanding of the microorganisms causing DAP could improve the adequacy of empirical antimicrobial therapy. We aimed to describe the pooled prevalence of DAP, the microorganisms involved, and the impact of DAP on drowned patients. METHODS: Systematic review and meta-analysis of studies published between 01/2000 and 07/2023 reporting on DAP occurrence and microorganisms involved...
April 20, 2024: Annals of Intensive Care
https://read.qxmd.com/read/38641078/in-vitro-and-in-vivo-evaluation-of-the-anti-infective-potential-of-the-essential-oil-extracted-from-the-leaves-of-plectranthus-amboinicus-lour-spreng-against-klebsiella-pneumoniae-and-elucidation-of-its-mechanism-of-action-through-proteomics-approach
#18
JOURNAL ARTICLE
Akshaya Rani Augustus, Sudipta Jana, Malik Basha Samsudeen, Hari Prasath Nagaiah, Karutha Pandian Shunmugiah
ETHNOPHARMACOLOGICAL RELEVANCE: Members of Plectranthus genus such as Plectranthus amboinicus (Lour.) Spreng is a well-known folkloric medicine around the globe in treating several human ailments such as cardiovascular, respiratory, digestive, urinary tract, skin and infective diseases. Its therapeutic value is primarily attributed to its essential oil. Although several properties of Plectranthus amboinicus essential oil have been documented, its mechanism of action and safety has not been completely elucidated...
April 17, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38639729/stewardship-prompts-to-improve-antibiotic-selection-for-pneumonia-the-inspire-randomized-clinical-trial
#19
JOURNAL ARTICLE
Shruti K Gohil, Edward Septimus, Ken Kleinman, Neha Varma, Taliser R Avery, Lauren Heim, Risa Rahm, William S Cooper, Mandelin Cooper, Laura E McLean, Naoise G Nickolay, Robert A Weinstein, L Hayley Burgess, Micaela H Coady, Edward Rosen, Selsebil Sljivo, Kenneth E Sands, Julia Moody, Justin Vigeant, Syma Rashid, Rebecca F Gilbert, Kim N Smith, Brandon Carver, Russell E Poland, Jason Hickok, S G Sturdevant, Michael S Calderwood, Anastasiia Weiland, David W Kubiak, Sujan Reddy, Melinda M Neuhauser, Arjun Srinivasan, John A Jernigan, Mary K Hayden, Abinav Gowda, Katyuska Eibensteiner, Robert Wolf, Jonathan B Perlin, Richard Platt, Susan S Huang
IMPORTANCE: Pneumonia is the most common infection requiring hospitalization and is a major reason for overuse of extended-spectrum antibiotics. Despite low risk of multidrug-resistant organism (MDRO) infection, clinical uncertainty often drives initial antibiotic selection. Strategies to limit empiric antibiotic overuse for patients with pneumonia are needed. OBJECTIVE: To evaluate whether computerized provider order entry (CPOE) prompts providing patient- and pathogen-specific MDRO infection risk estimates could reduce empiric extended-spectrum antibiotics for non-critically ill patients admitted with pneumonia...
April 19, 2024: JAMA
https://read.qxmd.com/read/38638833/study-on-the-inhibition-activity-and-mechanism-of-tanreqing-against-klebsiella-pneumoniae-biofilm-formation-in-vitro-and-in-vivo
#20
JOURNAL ARTICLE
Wenxia Zhang, Min He, Nana Kong, Yuxiao Niu, Anhong Li, Yuzhong Yan
OBJECTIVE: To evaluate the antibacterial effect of Tanreqing (TRQ) against K. pneumoniae and its inhibition activity on bacterial biofilm formation in vitro and in vivo , and to explore the mechanism of the inhibitory effects of TRQ on K. pneumoniae biofilm formation. METHODS: An in vitro biofilm model of K. pneumoniae was established, and the impact of TRQ on biofilm formation was evaluated using crystal violet staining and scanning electron microscopy (SEM). Furthermore, the clearance effect of TRQ against K...
2024: Frontiers in Cellular and Infection Microbiology
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