keyword
https://read.qxmd.com/read/37902422/population-specific-mutation-patterns-in-breast-tumors-from-african-american-european-american-and-kenyan-patients
#21
JOURNAL ARTICLE
Wei Tang, Flora Zhang, Jung S Byun, Tiffany H Dorsey, Harris G Yfantis, Anuoluwapo Ajao, Huaitian Liu, Margaret S Pichardo, Catherine M Pichardo, Alexandra R Harris, Xiaohong R Yang, Jonine D Figueroa, Shahin Sayed, Francis W Makokha, Stefan Ambs
Women of African descent have the highest breast cancer mortality in the United States and are more likely than women from other population groups to develop an aggressive disease. It remains uncertain to what extent breast cancer in Africa is reminiscent of breast cancer in African American or European American patients. Here, we performed whole exome sequencing of genomic DNA from 191 breast tumor and non-cancerous adjacent tissue pairs obtained from 97 African American, 69 European American, 2 Asian American, and 23 Kenyan patients...
October 30, 2023: Cancer Res Commun
https://read.qxmd.com/read/37878207/abnormal-activation-of-the-wnt3a-%C3%AE-catenin-signaling-pathway-promotes-the-expression-of-t-box-transcription-factor-3-tbx3-and-the-epithelial-mesenchymal-transition-pathway-to-mediate-the-occurrence-of-adenomyosis
#22
JOURNAL ARTICLE
Mengqi Li, Ting Li, Tingting Jin, Yi Chen, Lan Cheng, Qiheng Liang, Simiao Yan, Tingting Li, Qingzhen Ran, Wanqun Chen
BACKGROUND: T-box transcription factor 3(TBX3) is a transcription factor that can regulate cell proliferation, apoptosis, invasion, and migration in different tumor cells; however, its role in adenomyosis (ADM) has not been previously studied. Some of ADM's pathophysiological characteristics are similar to those of malignant tumors (e.g., abnormal proliferation, migration, and invasion). METHODS AND RESULTS: We hypothesized that TBX3 might have a role in ADM. We used tamoxifen-induced Institute of Cancer research (ICR) mice to establish ADM disease model...
October 25, 2023: Molecular Biology Reports
https://read.qxmd.com/read/37877373/the-n221d-variant-in-pcsk1-is-highly-prevalent-in-childhood-obesity-and-can-influence-the-metabolic-profile
#23
JOURNAL ARTICLE
Blanca Guijo, Jesús Argente, Gabriel Ángel Martos-Moreno
OBJECTIVES: To study the prevalence and influence on metabolic profile of the prohormone-convertase-1 (PCSK1) N221D variant in childhood obesity, proven its role in the leptin-melanocortin signaling pathway as in proinsulin and other prohormone cleavage. PATIENTS & METHODS: Transversal study of 1066 children with obesity (mean age and BMI Z-score 10.38 ± 3.44 years and +4.38 ± 1.77, respectively), 51.4 % males, 54.4 % prepubertal, 71...
October 26, 2023: Journal of Pediatric Endocrinology & Metabolism: JPEM
https://read.qxmd.com/read/37818083/tbx3-promotes-the-epithelial-mesenchymal-transition-of-cervical-cancer-by-upregulating-id1
#24
JOURNAL ARTICLE
Hongyu Yang, Yanan Sun, Xiaopeng Jia, Yuru Cai, Xingnan Zhao, Nan Li
In this study, we aim to investigate the role and mechanism of T-box transcription factor 3 (TBX3) in cervical cancer. The mRNA and protein expression of TBX3, inhibitor of DNA binding 1 (ID1), and epithelial mesenchymal transition (EMT) markers (E-Cadherin, N-Cadherin, and vimentin) were measured using qRT-PCR and Western blot. shTBX3 and shID1 were transfected into SiHa cells to knockdown TBX3 and ID1. The metastasis and invasion abilities of cervical cancer cells were determined using a wound healing assay and an invasive assay...
2023: American Journal of Cancer Research
https://read.qxmd.com/read/37799428/retracted-microrna-143-3p-tbx3-axis-represses-malignant-cell-behaviors-in-bladder-cancer
#25
Computational And Mathematical Methods In Medicine
[This retracts the article DOI: 10.1155/2022/2880087.].
2023: Computational and Mathematical Methods in Medicine
https://read.qxmd.com/read/37671016/rat-post-implantation-epiblast-derived-pluripotent-stem-cells-produce-functional-germ-cells
#26
JOURNAL ARTICLE
Kenyu Iwatsuki, Mami Oikawa, Hisato Kobayashi, Christopher A Penfold, Makoto Sanbo, Takuya Yamamoto, Shinichi Hochi, Kazuki Kurimoto, Masumi Hirabayashi, Toshihiro Kobayashi
In mammals, pluripotent cells transit through a continuum of distinct molecular and functional states en route to initiating lineage specification. Capturing pluripotent stem cells (PSCs) mirroring in vivo pluripotent states provides accessible in vitro models to study the pluripotency program and mechanisms underlying lineage restriction. Here, we develop optimal culture conditions to derive and propagate post-implantation epiblast-derived PSCs (EpiSCs) in rats, a valuable model for biomedical research...
August 28, 2023: Cell Rep Methods
https://read.qxmd.com/read/37645979/pregnancy-associated-bleeding-and-genetics-five-sequence-variants-in-the-myometrium-and-progesterone-signaling-pathway-are-associated-with-postpartum-hemorrhage
#27
David Westergaard, Valgerdur Steinthorsdottir, Lilja Stefansdottir, Palle Duun Rohde, Xiaoping Wu, Frank Geller, Jaakko Tyrmi, Aki S Havulinna, Pol Sole Navais, Christopher Flatley, Sisse Rye Ostrowski, Ole Birger Pedersen, Christian Erikstrup, Erik Sørensen, Christina Mikkelsen, Mie Topholm Brun, Bitten Aagaard Jensen, Thorsten Brodersen, Henrik Ullum, Per Magnus, Ole A Andreassen, Pål R Njolstad, Astrid Marie Kolte, Lone Krebs, Mette Nyegaard, Thomas Folkmann Hansen, Bjarke Fenstra, Mark Daly, Cecilia M Lindgren, Gudmar Thorleifsson, Olafur A Stefansson, Gardar Sveinbjornsson, Daniel F Gudbjartsson, Unnur Thorsteinsdottir, Karina Banasik, Bo Jacobsson, Triin Laisk, Hannele Laivuori, Kari Stefansson, Søren Brunak, Henriette Svarre Nielsen
Bleeding in early pregnancy and postpartum hemorrhage (PPH) bear substantial risks, with the former closely associated with pregnancy loss and the latter being the foremost cause of maternal death, underscoring the severity of these complications in maternal-fetal health. Here, we investigated the genetic variation underlying aspects of pregnancy-associated bleeding and identified five loci associated with PPH through a meta-analysis of 21,512 cases and 259,500 controls. Functional annotation analysis indicated candidate genes, HAND2 , TBX3 , and RAP2C / FRMD7, at three loci and showed that at each locus, associated variants were located within binding sites for progesterone receptors (PGR)...
August 15, 2023: medRxiv
https://read.qxmd.com/read/37579526/vincamine-from-an-antioxidant-and-a-cerebral-vasodilator-to-its-anticancer-potential
#28
REVIEW
Yulin Ren, Kevin DeRose, Leyan Li, Judith C Gallucci, Jianhua Yu, A Douglas Kinghorn
Vincamine is a naturally occurring indole alkaloid showing antioxidant activity and has been used clinically for the prevention and treatment of cerebrovascular disorders and insufficiencies. It has been well documented that antioxidants may contribute to cancer treatment, and thus, vincamine has been investigated recently for its potential antitumor activity. Vincamine was found to show cancer cell cytotoxicity and to modulate several important proteins involved in tumor growth, including acetylcholinesterase (AChE), mitogen-activated protein kinase (MAPK), nuclear factor-κB (NF-κB), nuclear factor erythroid 2-related factor 2 (Nrf2), and T-box 3 (TBX3)...
September 7, 2023: Bioorganic & Medicinal Chemistry
https://read.qxmd.com/read/37553721/rhox6-regulates-the-expression-of-distinct-target-genes-to-mediate-mouse-pgclc-formation-and-esc-self-renewal
#29
JOURNAL ARTICLE
Xiaofeng Li, Peng Chen, Junxiang Ji, Quanchao Duan, Jianjian Cao, Ru Huang, Shou-Dong Ye
BACKGROUND: Mouse embryonic stem cells (mESCs) not only retain the property of self-renewal but also have the ability to develop into primordial germ cell-like cells (PGCLCs). However, knowledge about the mechanisms of transcriptional regulation is still limited. Rhox6, a member of the homeobox family that is located on the X chromosome, is highly expressed within PGCLCs in vivo and in vitro. However, the detailed effects of Rhox6 on PGCLC specification and mESC maintenance remain unclear...
August 8, 2023: Cell & Bioscience
https://read.qxmd.com/read/37442233/isl1-regulates-lung-branching-morphogenesis-via-shh-signaling-pathway
#30
JOURNAL ARTICLE
Ruiqi Huang, Chujing Zhang, Yuting Zheng, Wei Zhang, Huarong Huang, Mengsheng Qiu, Jianying Li, Feixue Li
Lung branching morphogenesis relies on a complex coordination of multiple signaling pathways and transcription factors. Here, we found that ablation of the LIM homeodomain transcription factor Islet1 (Isl1) in lung epithelium resulted in defective branching morphogenesis and incomplete formation of five lobes. A reduction in mesenchymal cell proliferation was observed in Isl1ShhCre lungs. There was no difference in apoptosis between the wild-type (ShhCre ) and Isl1ShhCre embryos. RNA-Seq and in situ hybridization analysis showed that Shh, Ptch1, Sox9, Irx1, Irx2, Tbx2, and Tbx3 were downregulated in the lungs of Isl1ShhCre embryos...
July 11, 2023: Journal of Biological Chemistry
https://read.qxmd.com/read/37415797/effect-of-genetic-variants-in-ube2o-and-tpk1-on-facial-morphology-of-koreans
#31
JOURNAL ARTICLE
Hye-Won Cho, Hyo-Jeong Ban, Hyun-Seok Jin, Seongwon Cha, Yong-Bin Eom
UNLABELLED: Human face is a highly heritable and complex trait. Many genome-wide analyses have identified genetic variants influencing facial morphology. Genome-wide association studies (GWASs) investigating facial morphologies of different populations provide a comprehensive insight into the genetic basis of the human face. Here, we report a GWAS of normal facial variation in Koreans using an array optimized for the Korean population (KoreanChip). We found that novel genetic variants encompassing four loci reached the genome-wide significance threshold...
March 2023: Forensic Sciences Research
https://read.qxmd.com/read/37408215/conversion-of-unmodified-stem-cells-to-pacemaker-cells-by-overexpression-of-key-developmental-genes
#32
JOURNAL ARTICLE
Tahereh Karimi, Zhizhong Pan, Vladimir N Potaman, Eckhard U Alt
Arrhythmias of the heart are currently treated by implanting electronic pacemakers and defibrillators. Unmodified adipose tissue-derived stem cells (ASCs) have the potential to differentiate into all three germ layers but have not yet been tested for the generation of pacemaker and Purkinje cells. We investigated if-based on overexpression of dominant conduction cell-specific genes in ASCs-biological pacemaker cells could be induced. Here we show that by overexpression of certain genes that are active during the natural development of the conduction system, the differentiation of ASCs to pacemaker and Purkinje-like cells is feasible...
May 13, 2023: Cells
https://read.qxmd.com/read/37398291/kdm3a-and-kdm3b-maintain-na%C3%A3-ve-pluripotency-through-the-regulation-of-alternative-splicing
#33
Caleb Dillingham, Harshini Cormaty, Ellen Morgan, Dakarai Esgdaille, Paul Boutz, Rupa Sridharan
Histone modifying enzymes play a central role in maintaining cell identity by establishing a conducive chromatin environment for lineage specific transcription factor activity. Pluripotent embryonic stem cells (ESCs) identity is characterized by lower abundance of gene repression associated histone modifications that enables rapid response to differentiation cues. The KDM3 histone demethylase family removes the repressive histone H3 lysine 9 dimethylation (H3K9me2). Here we uncover a surprising role for the KDM3 proteins in the maintenance of the pluripotent state through post-transcriptional regulation...
June 1, 2023: bioRxiv
https://read.qxmd.com/read/37365410/characteristic-of-przewalski-horses-population-from-askania-nova-reserve-based-on-genetic-markers
#34
JOURNAL ARTICLE
Adrianna D Musiał, Katarzyna Ropka-Molik, Monika Stefaniuk-Szmukier, Grzegorz Myćka, Agnieszka Bieniek, Nataliya Yasynetska
Przewalski horses are considered the last living population of wild horses, however, they are secondarily feral offspring of herds domesticated ~ 5000 years ago by the Botai culture. After Przewalski horses were almost extinct at the beginning of the twentieth century, their population is about 2500 individuals worldwide, with one of the largest breeding centers in Askania-Nova Biosphere Reserve (Ukraine). The research aimed to establish the maternal variation of Przewalski horses population maintained in Askania-Nova Reserve based on mitochondrial DNA hypervariable 1 and hypervariable 2 regions profiling, as well as, analysis of Y chromosome single nucleotide polymorphism unique for Przewalski horses, and coat color markers: MC1R and TBX3...
June 26, 2023: Molecular Biology Reports
https://read.qxmd.com/read/37350193/rare-variants-found-in-multiplex-families-with-orofacial-clefts-does-expanding-the-phenotype-make-a-difference
#35
JOURNAL ARTICLE
Kimberly K Diaz Perez, Sydney Chung, S Taylor Head, Michael P Epstein, Jacqueline T Hecht, George L Wehby, Seth M Weinberg, Jeffrey C Murray, Mary L Marazita, Elizabeth J Leslie
Exome sequencing (ES) is now a relatively straightforward process to identify causal variants in Mendelian disorders. However, the same is not true for ES in families where the inheritance patterns are less clear, and a complex etiology is suspected. Orofacial clefts (OFCs) are highly heritable birth defects with both Mendelian and complex etiologies. The phenotypic spectrum of OFCs may include overt clefts and several subclinical phenotypes, such as discontinuities in the orbicularis oris muscle (OOM) in the upper lip, velopharyngeal insufficiency (VPI), microform clefts or bifid uvulas...
June 23, 2023: American Journal of Medical Genetics. Part A
https://read.qxmd.com/read/37292812/a-single-cell-transcriptomic-fingerprint-of-stressed-premature-imbalanced-differentiation-of-embryonic-stem-cells
#36
Ximena Ruden, Aditi Singh, Teya Marben, Wen Tang, Awoniyi Awonuga, Douglas M Ruden, Elizabeth Puscheck, Hao Feng, Daniel Rappolee
Cultured naïve pluripotent ESC differentiate into first lineage, XEN or second lineage, formative pluripotency. Hyperosmotic stress (sorbitol), like retinoic acid, decreases naive pluripotency and increases XEN in two ESC lines, as reported by bulk and scRNAseq, analyzed by UMAP. Sorbitol overrides pluripotency in two ESC lines as reported by bulk and scRNAseq, analyzed by UMAP. UMAP analyzed the effects of 5 stimuli - three stressed (200-300mM sorbitol with leukemia inhibitory factor +LIF) and two unstressed (+LIF, normal stemness-NS and -LIF, normal differentiation-ND)...
May 24, 2023: bioRxiv
https://read.qxmd.com/read/37272627/tbx5-overexpression-in-embryoid-bodies-increases-tak1-expression-but-does-not-enhance-the-differentiation-of-sinoatrial-node-cardiomyocytes
#37
JOURNAL ARTICLE
Yunkai Dai, Fatemeh Nasehi, Charles D Winchester, Ann C Foley
Genetic studies place Tbx5 at the apex of the sinoatrial node (SAN) transcriptional program. To understand its role in SAN differentiation, clonal embryonic stem (ES) cell lines were made that conditionally overexpress Tbx5, Tbx3, Tbx18, Shox2, Islet-1, and MAP3k7/TAK1. Cardiac cells differentiated using embryoid bodies (EBs). EBs overexpressing Tbx5, Islet1, and TAK1 beat faster than cardiac cells differentiated from control ES cell lines, suggesting possible roles in SAN differentiation. Tbx5 overexpressing EBs showed increased expression of TAK1, but cardiomyocytes did not differentiate as SAN cells...
June 15, 2023: Biology Open
https://read.qxmd.com/read/37271026/efficient-generation-of-tbx3-atrioventricular-conduction-like-cardiomyocytes-from-human-pluripotent-stem-cells
#38
JOURNAL ARTICLE
Rulong Du, Shuyun Bai, Ya Zhao, Yue Ma
Atrioventricular conduction cardiomyocytes (AVCCs) regulate the rate and rhythm of heart contractions. Dysfunction due to aging or disease can cause atrioventricular (AV) block, interrupting electrical impulses from the atria to the ventricles. Generation of functional atrioventricular conduction like cardiomyocytes (AVCLCs) from human pluripotent stem cells (hPSCs) provides a promising approach to repair damaged atrioventricular conduction tissue by cell transplantation. In this study, we put forward the generation of AVCLCs from hPSCs by stage-specific manipulation of the retinoic acid (RA), WNT, and bone morphogenetic protein (BMP) signaling pathways...
May 26, 2023: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/37239410/transcriptome-analysis-reveals-the-age-related-developmental-dynamics-pattern-of-the-longissimus-dorsi-muscle-in-ningxiang-pigs
#39
JOURNAL ARTICLE
Sui Liufu, Qun Lan, Xiaolin Liu, Bohe Chen, Xueli Xu, Nini Ai, Xintong Li, Zonggang Yu, Haiming Ma
The growth and development of the Longissimus Dorsi muscle are complex, playing an important role in the determination of pork quality. The study of the Longissimus Dorsi muscle at the mRNA level is particularly crucial for finding molecular approaches to improving meat quality in pig breeding. The current study utilized transcriptome technology to explore the regulatory mechanisms of muscle growth and intramuscular fat (IMF) deposition in the Longissimus Dorsi muscle at three core developmental stages (natal stage on day 1, growing stage on day 60, and finishing stage on day 210) in Ningxiang pigs...
May 8, 2023: Genes
https://read.qxmd.com/read/37184201/tbx5-overexpression-in-embryoid-bodies-increases-tak1-expression-but-does-not-enhance-the-differentiation-of-sinoatrial-node-cardiomyocytes
#40
JOURNAL ARTICLE
Yunkai Dai, Fatemeh Nasehi, Charles D Winchester, Ann C Foley
Genetic studies place Tbx5 at the apex of the sinoatrial node (SAN) transcriptional program. To understand its role in SAN differentiation, clonal embryonic stem (ES) cell lines were made that conditionally overexpress Tbx5, Tbx3, Tbx18, Shox2, Islet-1, and MAP3k7/TAK1. Cardiac cells differentiated using embryoid bodies (EBs). EBs overexpressing Tbx5, Islet1, and TAK1 beat faster than cardiac cells differentiated from control ES cell lines suggesting possible roles in SAN differentiation. Tbx5 overexpressing EBs showed increased expression of TAK1, but cardiomyocytes did not differentiate as SAN cells...
May 15, 2023: Biology Open
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