keyword
MENU ▼
Read by QxMD icon Read
search

PANK

keyword
https://www.readbyqxmd.com/read/29107839/efficient-one-pot-enzymatic-synthesis-of-dephospho-coenzyme-a
#1
Krishna Sapkota, Faqing Huang
Dephospho coenzyme A (depCoA) is the last intermediate for CoA biosynthesis, and it can be used as a transcription initiator to prepare CoA-linked RNA by in vitro transcription. However, commercially available depCoA is expensive. We hereby describe a simple and efficient enzymatic synthesis of depCoA in a single-step from commercially available and inexpensive oxidized pantethine (Ox-Pan) and ATP. A plasmid (pCoaDAa) was constructed to co-express and co-purify two enzymes pantothenate kinase (PanK/coaA) and phosphopantetheine adenylyltransferase (PPAT/coaD)...
November 3, 2017: Bioorganic Chemistry
https://www.readbyqxmd.com/read/29061328/artificial-metalloenzymes-on-the-verge-of-new-to-nature-metabolism
#2
REVIEW
Markus Jeschek, Sven Panke, Thomas R Ward
Residing at the interface of chemistry and biotechnology, artificial metalloenzymes (ArMs) offer an attractive technology to combine the versatile reaction repertoire of transition metal catalysts with the exquisite catalytic features of enzymes. While earlier efforts in this field predominantly comprised studies in well-defined test-tube environments, a trend towards exploiting ArMs in more complex environments has recently emerged. Integration of these artificial biocatalysts in enzymatic cascades and using them in whole-cell biotransformations and in vivo opens up entirely novel prospects for both preparative chemistry and synthetic biology...
October 20, 2017: Trends in Biotechnology
https://www.readbyqxmd.com/read/29050667/toward%C3%A2-genome-based-metabolic-engineering-in-bacteria
#3
Sabine Oesterle, Irene Wuethrich, Sven Panke
Prokaryotes modified stably on the genome are of great importance for production of fine and commodity chemicals. Traditional methods for genome engineering have long suffered from imprecision and low efficiencies, making construction of suitable high-producer strains laborious. Here, we review the recent advances in discovery and refinement of molecular precision engineering tools for genome-based metabolic engineering in bacteria for chemical production, with focus on the λ-Red recombineering and the clustered regularly interspaced short palindromic repeats/Cas9 nuclease systems...
2017: Advances in Applied Microbiology
https://www.readbyqxmd.com/read/28952537/the-bistable-behaviour-of-pseudomonas-putida-kt2440-during-pha-depolymerization-under-carbon-limitation
#4
Stephanie Karmann, Sven Panke, Manfred Zinn
Poly(hydroxyalkanoates) (PHAs) are bacterial polyesters offering a biodegradable alternative to petrochemical plastics. The intracellular formation and degradation of PHAs is a dynamic process that strongly depends on the availability of carbon and other nutrients. Carbon excess and nitrogen limitation are considered to favor PHA accumulation, whereas carbon limitation triggers PHA depolymerization when all other essential nutrients are present in excess. We studied the population dynamics of Pseudomonas putida KT2440 at the single cell level during different physiological conditions, favoring first PHA polymerization during growth on octanoic acid, and then PHA depolymerization during carbon limitation...
June 19, 2017: Bioengineering
https://www.readbyqxmd.com/read/28951570/efficient-engineering-of-chromosomal-ribosome-binding-site-libraries-in-mismatch-repair-proficient-escherichia-coli
#5
Sabine Oesterle, Daniel Gerngross, Steven Schmitt, Tania Michelle Roberts, Sven Panke
Multiplexed gene expression optimization via modulation of gene translation efficiency through ribosome binding site (RBS) engineering is a valuable approach for optimizing artificial properties in bacteria, ranging from genetic circuits to production pathways. Established algorithms design smart RBS-libraries based on a single partially-degenerate sequence that efficiently samples the entire space of translation initiation rates. However, the sequence space that is accessible when integrating the library by CRISPR/Cas9-based genome editing is severely restricted by DNA mismatch repair (MMR) systems...
September 26, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28750202/combinatorial-pathway-optimization-for-streamlined-metabolic-engineering
#6
REVIEW
Markus Jeschek, Daniel Gerngross, Sven Panke
Elimination of metabolic flux imbalances in microbial cell factories is an important part in the establishment of viable biotechnological production processes. However, due to the high complexity of cellular metabolism, the limited a priori knowledge about the majority of production pathways and a lack of forward design standards, metabolic engineers strongly rely on empirical screening methodologies to achieve the required improvement of cell behavior. Combinatorial pathway engineering provides an interesting tool to identify global solutions for intricate pathways, but methods for the reduction of combinatorial library size are inevitably required to restrict the experimental effort to an affordable size...
July 24, 2017: Current Opinion in Biotechnology
https://www.readbyqxmd.com/read/28691029/laparoscopic-pyeloplasty-for-ureteropelvic-junctions-obstruction-in-adults-6-years-experience-in-one-center
#7
Rikke Søgaard Tolstrup, Marie Thue Pank, Lotte Sander, Torben Dørflinger
OBJECTIVE: Ureteropelvic junction obstruction (UPJO) is a common cause of symptomatic ureteral obstruction. The aim of this study is to assess the outcome of laparoscopic pyeloplasty in patients with UPJO. PATIENTS AND METHODS: Medical reports of 47 UPJO patients treated with laparoscopic pyeloplasty were retrospectively analysed. All patients were recruited from our center in the period 2004-2011. RESULTS: We evaluated 47 patients. Mean age was 36 years and mean hospital stay 3...
2017: BioMed Research International
https://www.readbyqxmd.com/read/28676844/genetic-characterization-of-coenzyme-a-biosynthesis-reveals-essential-distinctive-functions-during-malaria-parasite-development-in-blood-and-mosquito
#8
Robert J Hart, Amanah Abraham, Ahmed S I Aly
Coenzyme A (CoA) is an essential universal cofactor for all prokaryotic and eukaryotic cells. In nearly all non-photosynthetic cells, CoA biosynthesis depends on the uptake and phosphorylation of vitamin B5 (pantothenic acid or pantothenate). Recently, putative pantothenate transporter (PAT) and pantothenate kinases (PanKs) were functionally characterized in P. yoelii. PAT and PanKs were shown to be dispensable for blood stage development, but they were essential for mosquito stages development. Yet, little is known about the cellular functions of the other enzymes of the CoA biosynthesis pathway in malaria parasite life cycle stages...
2017: Frontiers in Cellular and Infection Microbiology
https://www.readbyqxmd.com/read/28585362/tailor-made-pat-platform-for-safe-syngas-fermentations-in-batch-fed-batch-and-chemostat-mode-with-rhodospirillum-rubrum
#9
Stephanie Karmann, Stéphanie Follonier, Daniel Egger, Dirk Hebel, Sven Panke, Manfred Zinn
Recently, syngas has gained significant interest as renewable and sustainable feedstock, in particular for the biotechnological production of poly([R]-3-hydroxybutyrate) (PHB). PHB is a biodegradable, biocompatible polyester produced by some bacteria growing on the principal component of syngas, CO. However, working with syngas is challenging because of the CO toxicity and the explosion danger of H2 , another main component of syngas. In addition, the bioprocess control needs specific monitoring tools and analytical methods that differ from standard fermentations...
November 2017: Microbial Biotechnology
https://www.readbyqxmd.com/read/28534959/microrna-200c-regulates-cisplatin-resistance-by-targeting-zeb2-in-human-gastric-cancer-cells
#10
Tao Jiang, Pengfei Dong, Long Li, Xiao Ma, Pei Xu, He Zhu, Yanqiu Wang, Baotong Yang, Kuangge Liu, Jinwei Liu, Juan Xue, Runzhe Lv, Panke Su, Guoqiang Kong, Yongchao Chang, Chonggao Zhao, Lidong Wang
This study was specifically designed to confirm the hypothesis that microRNA-200c (miR-200c) affects the development of cisplatin (DDP) resistance in human gastric cancer cells by targeting zinc finger E-box binding homeobox 2 (ZEB2). A total of 50 gastric cancer tissues and their corresponding normal adjacent tissue samples were collected. Then, the expression levels of miR-200c and ZEB2 in both gastric cancer specimens and cells were detected using the quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) and immunohistochemical methods...
May 22, 2017: Oncology Reports
https://www.readbyqxmd.com/read/28441142/magnetization-dynamics-in-magnonic-structures-with-different-geometries-interfaces-notches-and-waveguides
#11
M Mansurova, J von der Haar, J Panke, Jakob Walowski, Henning Ulrichs, M Münzenberg
The discovery of ultrafast magnetization dynamics 20 years ago has led to a broad variety of experimental techniques to explore phenomena in magnetic materials with high temporal resolution. In the current article we present a study dealing with broadband excitation of spin-wave packets at different magnonic crystal continuous magnetic film interfaces. Similar to protected conducting states on the surfaces of topological band insulators, these interfaces exhibit surface spin-wave modes that propagate out of the crystal into the continuous film...
June 1, 2017: Journal of Physics. Condensed Matter: An Institute of Physics Journal
https://www.readbyqxmd.com/read/28438135/a-passive-mutualistic-interaction-promotes-the-evolution-of-spatial-structure-within-microbial-populations
#12
Marie Marchal, Felix Goldschmidt, Selina N Derksen-Müller, Sven Panke, Martin Ackermann, David R Johnson
BACKGROUND: While mutualistic interactions between different genotypes are pervasive in nature, their evolutionary origin is not clear. The dilemma is that, for mutualistic interactions to emerge and persist, an investment into the partner genotype must pay off: individuals of a first genotype that invest resources to promote the growth of a second genotype must receive a benefit that is not equally accessible to individuals that do not invest. One way for exclusive benefits to emerge is through spatial structure (i...
April 24, 2017: BMC Evolutionary Biology
https://www.readbyqxmd.com/read/28346794/comparative-study-of-xenobiotic-free-media-for-the-cultivation-of-human-limbal-epithelial-stem-progenitor-cells
#13
COMPARATIVE STUDY
Sheyla González, Luxia Chen, Sophie X Deng
The culture of human limbal epithelial stem/progenitor cells (LSCs) in the presence of animal components poses the risk of cross-species contamination in clinical applications. We quantitatively compared different xenobiotic-free culture media for the cultivation of human LSCs. LSCs were cultured from 2 × 2 mm limbal tissue explants on denuded human amniotic membrane with different xenobiotic-free culture media: CnT-Prime (CnT-PR) supplemented with 0%, 1%, 5%, and 10% human serum (HS), embryonic stem cell medium (ESCM) alone or in combination with the standard supplemented hormonal epithelium medium (SHEM, control) at a 1:1 dilution ratio, and modified SHEM (mSHEM), in which cholera toxin and dimethyl sulfoxide (DMSO) were removed, isoproterenol was added, and the epidermal growth factor concentration was reduced...
April 2017: Tissue Engineering. Part C, Methods
https://www.readbyqxmd.com/read/28284103/a-vegf-delivery-system-targeting-mi-improves-angiogenesis-and-cardiac-function-based-on-the-tropism-of-mscs-and-layer-by-layer-self-assembly
#14
Ge Liu, Li Li, Da Huo, Yanzhao Li, Yangxiao Wu, Lingqing Zeng, Panke Cheng, Malcolm Xing, Wen Zeng, Chuhong Zhu
Myocardial infarction (MI) is a serious ischemic condition affecting many individuals around the world. Vascular endothelial growth factor (VEGF) is considered a promising factor for enhancing cardiac function by promoting angiogenesis. However, the lack of a suitable method of VEGF delivery to the MI area is a serious challenge. In this study, we screened a suitable delivery carrier with favorable biocompatibility that targeted the MI area using the strategy of an inherent structure derived from the body and that was based on characteristics of the MI...
May 2017: Biomaterials
https://www.readbyqxmd.com/read/28283403/genome-surfing-as-driver-of-microbial-genomic-diversity
#15
REVIEW
Mallory J Choudoir, Kevin Panke-Buisse, Cheryl P Andam, Daniel H Buckley
Historical changes in population size, such as those caused by demographic range expansions, can produce nonadaptive changes in genomic diversity through mechanisms such as gene surfing. We propose that demographic range expansion of a microbial population capable of horizontal gene exchange can result in genome surfing, a mechanism that can cause widespread increase in the pan-genome frequency of genes acquired by horizontal gene exchange. We explain that patterns of genetic diversity within Streptomyces are consistent with genome surfing, and we describe several predictions for testing this hypothesis both in Streptomyces and in other microorganisms...
March 7, 2017: Trends in Microbiology
https://www.readbyqxmd.com/read/28243574/5-year-imaging-sequelae-of-concussive-blast-injury-and-relation-to-early-clinical-outcome
#16
Christine L Mac Donald, Jason Barber, Jalal Andre, Nicole Evans, Chris Panks, Samantha Sun, Kody Zalewski, R Elizabeth Sanders, Nancy Temkin
Current imaging diagnostic techniques are often insensitive to the underlying pathological changes following mild traumatic brain injury (TBI) or concussion so much so that the explicit definition of these uncomplicated mild brain injuries includes the absence of radiological findings. In the US military, this is complicated by the natural tendency of service members to down play symptoms for fear of removal from their unit particularly in combat making it challenging for clinicians to definitively diagnose and determine course of treatment...
2017: NeuroImage: Clinical
https://www.readbyqxmd.com/read/28239413/improving-acetyl-coa-biosynthesis-in-saccharomyces-cerevisiae-via-the-overexpression-of-pantothenate-kinase-and-pdh-bypass
#17
Wenshan Liu, Bo Zhang, Rongrong Jiang
BACKGROUND: Acetyl-CoA is an important precursor in Saccharomyces cerevisiae. Various approaches have been adopted to improve its cytosolic level previously with the emphasis on engineering the "acetyl-" part of acetyl-CoA. To the best of our knowledge, there have been no reports on engineering the "-CoA" part so far. RESULTS: In this study, we had tried to engineer S. cerevisiae from both the "-CoA" part via pantothenate kinase overexpression (PanK from S. cerevisiae, the rate-limiting enzyme for CoA synthesis) and the "acetyl-"part through PDH bypass introduction (ALD6 from S...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28062280/biotin-independent-strains-of-escherichia-coli-for-enhanced-streptavidin-production
#18
Markus Jeschek, Maximilian O Bahls, Veronika Schneider, Philippe Marlière, Thomas R Ward, Sven Panke
Biotin is an archetypal vitamin used as cofactor for carboxylation reactions found in all forms of life. However, biotin biosynthesis is an elaborate multi-enzymatic process and metabolically costly. Moreover, many industrially relevant organisms are incapable of biotin synthesis resulting in the requirement to supplement defined media. Here we describe the creation of biotin-independent strains of Escherichia coli and Corynebacterium glutamicum through installation of an optimized malonyl-CoA bypass, which re-routes natural fatty acid synthesis, rendering the previously essential vitamin completely obsolete...
January 3, 2017: Metabolic Engineering
https://www.readbyqxmd.com/read/27989807/overcoming-the-membrane-barrier-recruitment-of-%C3%AE-glutamyl-transferase-for-intracellular-release-of-metabolic-cargo-from-peptide-vectors
#19
Tilmann Kuenzl, Magdalena Sroka, Puneet Srivastava, Piet Herdewijn, Philippe Marlière, Sven Panke
Semipermeable membranes of cells frequently pose an obstacle in metabolic engineering by limiting uptake of substrates, intermediates, or xenobiotics. Previous attempts to overcome this barrier relied on the promiscuous nature of peptide transport systems, but often suffered from low versatility or chemical instability. Here, we present an alternative strategy to transport cargo molecules across the inner membrane of Escherichia coli based on chemical synthesis of a stable cargo-peptide vector construct, transport through the peptide import system, and efficient intracellular release of the cargo by the promiscuous enzyme γ-glutamyl transferase (GGT)...
January 2017: Metabolic Engineering
https://www.readbyqxmd.com/read/27981013/plga-pnipam-microspheres-loaded-with-the-gastrointestinal-nutrient-nab-ameliorate-cardiac-dysfunction-by-activating-sirt3-in-acute-myocardial-infarction
#20
Panke Cheng, Wen Zeng, Li Li, Da Huo, Lingqing Zeng, Ju Tan, Jingting Zhou, Jiansen Sun, Ge Liu, Yanzhao Li, Ge Guan, Yuxin Wang, Chuhong Zhu
Acute myocardial infarction (AMI) is the death of cardiomyocytes caused by a lack of energy due to ischemia. Nutrients supplied by the blood are the main source of cellular energy for cardiomyocytes. Sodium butyrate (NaB), a gastrointestinal nutrient, is a short-chain fatty acid (butyric acid) that may act as an energy source in AMI therapy. Poly(lactic-co-glycolic acid)-Poly (N-isopropylacrylamide) microspheres loaded with NaB (PP-N) are synthesized to prolong the release of NaB and are injected into ischemic zones in a Sprague-Dawley rat AMI model...
December 2016: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
keyword
keyword
120003
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"