keyword
https://read.qxmd.com/read/37670359/total-network-controllability-analysis-discovers-explainable-drugs-for-covid-19-treatment
#21
JOURNAL ARTICLE
Xinru Wei, Chunyu Pan, Xizhe Zhang, Weixiong Zhang
BACKGROUND: The active pursuit of network medicine for drug repurposing, particularly for combating Covid-19, has stimulated interest in the concept of structural controllability in cellular networks. We sought to extend this theory, focusing on the defense rather than control of the cell against viral infections. Accordingly, we extended structural controllability to total structural controllability and introduced the concept of control hubs. Perturbing any control hub may render the cell uncontrollable by exogenous stimuli like viral infections, so control hubs are ideal drug targets...
September 5, 2023: Biology Direct
https://read.qxmd.com/read/37542132/targeting-tlk2-inhibits-the-progression-of-gastric-cancer-by-reprogramming-amino-acid-metabolism-through-the-mtor-asns-axis
#22
JOURNAL ARTICLE
Mingliang Wang, Jing Li, Xiaodong Yang, Qiang Yan, Huizhen Wang, Xin Xu, Yida Lu, Deguan Li, Yigao Wang, Ruochuan Sun, Shangxin Zhang, Yonghong Zhang, Zhen Zhang, Futao Meng, Yongxiang Li
Several recent studies have suggested that TLKs are related to tumor progression. However, the function and mechanism of action of TLK2 in gastric cancer (GC) remain elusive. In this study, TLK2 was found to be significantly upregulated in patients with GC and was identified as an independent prognostic factor for GC. Consistently, TLK2 knockdown markedly reduced the aggressiveness of GC, whereas its overexpression had the opposite effect. IP-MS revealed that the effects of TLK2 on GC were mainly associated with metabolism reprogramming...
August 4, 2023: Cancer Gene Therapy
https://read.qxmd.com/read/37534543/regulatory-t-cell-dysfunctions-are-associated-with-increase-in-tumor-necrosis-factor-%C3%AE-in-autoimmune-hemolytic-anemia-and-participate-in-th17-polarization
#23
JOURNAL ARTICLE
Marion Ciudad, Sethi Ouandji, Baptiste Lamarthée, Claudie Cladière, Thibault Ghesquière, Martin Nivet, Marine Thébault, Romain Boidot, Agnès Soudry-Faure, Sandy Chevrier, Corentin Richard, Thibault Maillet, François Maurier, Hélène Greigert, Coraline Genet, André Ramon, Malika Trad, Valérie Predan, Philippe Saas, Maxime Samson, Bernard Bonnotte, Sylvain Audia
Warm autoimmune hemolytic anemia (wAIHA) is a rare acquired autoimmune disease mediated by antibodies targeting red blood cells. The involvement of CD4 T helper (Th) cells has been scarcely explored, with most findings extrapolated from animal models. Here, we performed quantification of both effector T lymphocytes (Teff) and regulatory T cells (Treg), associated with functional and transcriptomic analyses of Treg in human wAIHA. We observed a shift of Teff toward a Th17 polarization concordant with an increase in serum IL-17 concentration that correlates with RBC destruction parameters, namely LDH and bilirubin levels...
August 3, 2023: Haematologica
https://read.qxmd.com/read/37522746/mast-cells-are-upregulated-in-hidradenitis-suppurativa-tissue-associated-with-epithelialized-tunnels-and-normalized-by-spleen-tyrosine-kinase-antagonism
#24
JOURNAL ARTICLE
A Flora, R Jepsen, E K Kozera, J A Woods, G D Cains, M Radzieta, S O Jensen, M Malone, J W Frew
Mast cells have traditionally been associated with allergic inflammatory responses; however, they play important roles in cutaneous innate immunity and wound healing. The Hidradenitis Suppurativa tissue transcriptome is associated with alterations in innate immunity and wound healing-associated pathways; however, the role of mast cells in the disease is unexplored. We demonstrate that mast cell-associated gene expression (using whole tissue RNAseq) is upregulated, and in-silico cellular deconvolution identifies activated mast cells upregulated and resting mast cells downregulated in lesional tissue...
July 31, 2023: Experimental Dermatology
https://read.qxmd.com/read/37503262/total-network-controllability-analysis-discovers-explainable-drugs-for-covid-19-treatment
#25
Xinru Wei, Chunyu Pan, Xizhe Zhang, Weixiong Zhang
Background The active pursuit of network medicine for drug repurposing, particularly for combating Covid-19, has stimulated interest in the concept of structural control capability in cellular networks. We sought to extend this theory, focusing on the defense rather than control of the cell against viral infections. Accordingly, we extended structural controllability to total structural controllability and introduced the concept of control hubs. Perturbing any control hub may render the cell uncontrollable by exogenous stimuli like viral infections, so control hubs are ideal drug targets...
July 14, 2023: Research Square
https://read.qxmd.com/read/37467664/a-deep-learning-based-drug-repurposing-screening-and-validation-for-anti-sars-cov-2-compounds-by-targeting-the-cell-entry-mechanism
#26
JOURNAL ARTICLE
Yingjia Yao, Yunhan Zhang, Zexu Li, Zhisong Chen, Xiaofeng Wang, Zihan Li, Li Yu, Xiaolong Cheng, Wei Li, Wen-Jie Jiang, Hua-Jun Wu, Zezhong Feng, Jinfu Sun, Teng Fei
The recent outbreak of Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been a severe threat to the global public health and economy, however, effective drugs to treat COVID-19 are still lacking. Here, we employ a deep learning-based drug repositioning strategy to systematically screen potential anti-SARS-CoV-2 drug candidates that target the cell entry mechanism of SARS-CoV-2 virus from 2635 FDA-approved drugs and 1062 active ingredients from Traditional Chinese Medicine herbs...
July 12, 2023: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/37452977/polygalic-acid-inhibits-african-swine-fever-virus-polymerase-activity-findings-from-machine-learning-and-in-vitro-testing
#27
JOURNAL ARTICLE
Jiwon Choi, Hyundo Lee, Soyoung Cho, Yorim Choi, Thuy X Pham, Trang T X Huynh, Yun-Sook Lim, Soon B Hwang
African swine fever virus (ASFV), an extremely contagious virus with high mortality rates, causes severe hemorrhagic viral disease in both domestic and wild pigs. Fortunately, ASFV cannot be transmitted from pigs to humans. However, ongoing ASFV outbreaks could have severe economic consequences for global food security. Although ASFV was discovered several years ago, no vaccines or treatments are commercially available yet; therefore, the identification of new anti-ASFV drugs is urgently warranted. Using molecular docking and machine learning, we have previously identified pentagastrin, cangrelor, and fostamatinib as potential antiviral drugs against ASFV...
July 15, 2023: Journal of Computer-aided Molecular Design
https://read.qxmd.com/read/37437506/bioinformatics-analysis-to-identify-breast-cancer-related-potential-targets-and-candidate-small-molecule-drugs
#28
JOURNAL ARTICLE
Huan Hong, Haifeng Chen, Junjie Zhao, Long Qin, Hongrui Li, Haibo Huo, Suqiang Shi
OBJECTIVE: The purpose of this study is to identify potential targets associated with breast cancer and screen potential small molecule drugs using bioinformatics analysis. METHODS: DEGs analysis of breast cancer tissues and normal breast tissues was performed using R language limma analysis on the GSE42568 and GSE205185 datasets. Functional enrichment analysis was conducted on the intersecting DEGs. The STRING analysis platform was used to construct a PPI network, and the top 10 core nodes were identified using Cytoscape software...
July 5, 2023: Mutation Research
https://read.qxmd.com/read/37426835/use-and-positioning-of-fostamatinib-in-the-management-of-primary-chronic-immune-thrombocytopenia-an-italian-expert-opinion
#29
REVIEW
Alessandro Lucchesi, Bruno Fattizzo, Valerio De Stefano, Marco Ruggeri, Sergio Siragusa, Nicola Vianelli, Francesco Zaja, Francesco Rodeghiero
Fostamatinib, a spleen tyrosine kinase (Syk) inhibitor, represents a new therapeutic opportunity for patients with immune thrombocytopenia (ITP) in Europe and Italy. However, the positioning of this drug in patient's therapeutic sequence is undefined within the most recent international guidelines. The conclusions from a consensus meeting between Italian experts, whose task was to outline the profile of the ideal candidate to receive fostamatinib, are reported here. A modified Delphi methodology was used to achieve shared statements, which were reported in a narrative form...
2023: Therapeutic Advances in Hematology
https://read.qxmd.com/read/37350973/targeting-macrophage-syk-enhances-responses-to-immune-checkpoint-blockade-and-radiotherapy-in-high-risk-neuroblastoma
#30
JOURNAL ARTICLE
Deepak Rohila, In Hwan Park, Timothy V Pham, Riley Jones, Elisabette Tapia, Kevin X Liu, Pablo Tamayo, Alice Yu, Andrew B Sharabi, Shweta Joshi
BACKGROUND: Neuroblastoma (NB) is considered an immunologically cold tumor and is usually less responsive to immune checkpoint blockade (ICB). Tumor-associated macrophages (TAMs) are highly infiltrated in NB tumors and promote immune escape and resistance to ICB. Hence therapeutic strategies targeting immunosuppressive TAMs can improve responses to ICB in NB. We recently discovered that spleen tyrosine kinase (Syk) reprograms TAMs toward an immunostimulatory phenotype and enhances T-cell responses in the lung adenocarcinoma model...
2023: Frontiers in Immunology
https://read.qxmd.com/read/37336547/conserved-transcriptional-programming-across-sex-and-species-after-peripheral-nerve-injury-predicts-treatments-for-neuropathic-pain
#31
JOURNAL ARTICLE
Shahrzad Ghazisaeidi, Milind M Muley, Yu Shan Tu, David P Finn, Mahshad Kolahdouzan, Graham M Pitcher, Doyeon Kim, Ameet S Sengar, Arun K Ramani, Michael Brudno, Michael W Salter
BACKGROUND AND PURPOSE: Chronic pain is a devastating problem affecting 1 in 5 individuals around the globe, with neuropathic pain the most debilitating and poorly treated type of chronic pain. Advances in transcriptomics have contributed to cataloging diverse cellular pathways and transcriptomic alterations in response to peripheral nerve injury but have focused on phenomenology and classifying transcriptomic responses. EXPERIMENTAL APPROACH: Here, with the goal of identifying new types of pain-relieving agents, we compared transcriptional reprogramming changes in the dorsal spinal cord after peripheral nerve injury cross-sex and cross-species and imputed commonalities, as well as differences in cellular pathways and gene regulation...
June 19, 2023: British Journal of Pharmacology
https://read.qxmd.com/read/37323813/two-refractory-immune-thrombocytopenia-case-reports-showing-responsiveness-to-fostamatinib
#32
Vanessa Innao, Rosalba Donatella Calogero, Fabrizio Lo Presti, Ugo Consoli
Immune thrombocytopenia (ITP) is immune-mediated platelet loss due to increased destruction and insufficient production. Treatment guidelines provide for first-line steroid-based therapies followed by thrombopoietin receptor agonists (TPO-RAs) and fostamatinib for chronic ITP. Fostamatinib demonstrated efficacy in phase 3 FIT trials (FIT1 and FIT2) mainly in second-line therapy resulting in the maintenance of stable platelet values. Here, we describe two patients with extremely heterogeneous characteristics that responded to fostamatinib after two and nine previous treatments...
2023: Case Reports in Hematology
https://read.qxmd.com/read/37307994/a-proof-of-concept-open-label-clinical-trial-of-spleen-tyrosine-kinase-antagonism-using-fostamatinib-in-moderate-to-severe-hidradenitis-suppurativa
#33
JOURNAL ARTICLE
Rebecca Jepsen, Chloe Edwards, Akshay Flora, Emily Kozera, John W Frew
BACKGROUND: Hidradenitis Suppurativa is an autoinflammatory disorder of keratinization with a prominence of B cells and plasma cells. Fostamatinib is a spleen tyrosine kinase inhibitor targeting B cells and plasma cells. OBJECTIVES: To assess the safety, tolerability and clinical response at week 4 and week 12 of fostamatinib in moderate to severe HS. METHODS: Twenty participants were administered fostamatinib 100mg BID for 4 weeks, escalating to 150mg BID thereafter until week 12...
June 10, 2023: Journal of the American Academy of Dermatology
https://read.qxmd.com/read/37306759/syk-inhibition-reprograms-tumor-associated-macrophages-and-overcomes-gemcitabine-induced-immunosuppression-in-pancreatic-ductal-adenocarcinoma
#34
JOURNAL ARTICLE
Deepak Rohila, In Hwan Park, Timothy V Pham, Jonathan Weitz, Tatiana Hurtado de Mendoza, Suresh Madheswaran, Mehreen Ishfaq, Cooper Beaman, Elisabette Tapia, Siming Sun, Jay Patel, Pablo Tamayo, Andrew M Lowy, Shweta Joshi
Pancreatic ductal adenocarcinoma (PDAC) is an insidious disease with a low five-year survival rate. PDAC is characterized by infiltration of abundant tumor-associated macrophages (TAMs) that promote immune tolerance and immunotherapeutic resistance. Here we report that macrophage spleen tyrosine kinase (Syk) promotes PDAC growth and metastasis. In orthotopic PDAC mouse models, genetic deletion of myeloid Syk reprogrammed macrophages into immunostimulatory phenotype, increased the infiltration, proliferation, and cytotoxicity of CD8+ T cells, and repressed PDAC growth and metastasis...
June 12, 2023: Cancer Research
https://read.qxmd.com/read/37271531/-recent-topics-in-the-pathophysiology-and-treatment-of-immune-thrombocytopenic-purpura
#35
JOURNAL ARTICLE
Hirokazu Kashiwagi
Increased and impaired platelet productions via immunological abnormalities are the main pathophysiological mechanisms of primary immune thrombocytopenia (ITP). Recent studies have revealed that platelet removal from circulation involves not only Fc receptor-mediated phagocytosis of immunoglobulin G autoantibodies-bound platelets but also complement-dependent mechanism and platelet glycoprotein desialylation. Understanding the molecular mechanism of ITP pathophysiology has helped develop many novel molecular targeted drugs, and recent clinical trials have shown their effectiveness...
2023: [Rinshō Ketsueki] the Japanese Journal of Clinical Hematology
https://read.qxmd.com/read/37261484/identification-of-natural-product-based-effective-inhibitors-of-spleen-tyrosine-kinase-syk-through-virtual-screening-and-molecular-dynamics-simulation-approaches
#36
JOURNAL ARTICLE
Tufail Ali, Farah Anjum, Arunabh Choudhury, Alaa Shafie, Amal Adnan Ashour, Abdulraheem Almalki, Taj Mohammad, Md Imtaiyaz Hassan
Spleen tyrosine kinase (SYK) is a non-receptor tyrosine kinase that plays an essential role in signal transduction across different cell types. In the context of allergy and autoimmune disorders, it is a crucial regulator of immune receptor signaling in inflammatory cells such as B cells, mast cells, macrophages, and neutrophils. Developing SYK kinase inhibitors has gained significant interest for potential therapeutic applications in neurological and cancer-related conditions. The clinical use of the most advanced SYK inhibitor, Fostamatinib, has been limited due to its unwanted side effects...
June 1, 2023: Journal of Biomolecular Structure & Dynamics
https://read.qxmd.com/read/37188068/efgartigimod-alfa-for-the-treatment-of-primary-immune-thrombocytopenia
#37
REVIEW
Catherine Broome
Primary immune thrombocytopenia (ITP) is an acquired autoimmune disorder characterized by isolated thrombocytopenia. Most patients with ITP have antiplatelet antibodies of the immunoglobulin G (IgG) subtype which through interaction with platelet and megakaryocyte glycoproteins result in increased platelet destruction and inhibition of platelet production. There are a variety of therapeutic options available for the treatment of ITP including corticosteroids, IVIgG, TPO-RA, rituximab, fostamatinib, and splenectomy...
2023: Therapeutic Advances in Hematology
https://read.qxmd.com/read/37113536/schizophrenia-and-cell-senescence-candidate-genes-screening-machine-learning-diagnostic-models-and-drug-prediction
#38
JOURNAL ARTICLE
Yu Feng, Jing Shen, Jin He, Minyan Lu
BACKGROUND: Schizophrenia (SC) is one of the most common psychiatric diseases. Its potential pathogenic genes and effective treatment methods are still unclear. Cell senescence has been confirmed in mental diseases. A link exists between cellular senescence and immunity, and immune-related problems affect suicide rates in individuals suffering from schizophrenia. Therefore, the aims of this study were to identify candidate genes based on cell senescence that can affect the diagnosis and treatment of schizophrenia...
2023: Frontiers in Psychiatry
https://read.qxmd.com/read/37109773/current-concepts-in-the-diagnosis-and-management-of-adult-primary-immune-thrombocytopenia-our-personal-view
#39
JOURNAL ARTICLE
Tomás José González-López, Adrian Newland, Drew Provan
Primary immune thrombocytopenia (ITP) is an acquired blood disorder that causes a reduction in circulating platelets with the potential for bleeding. The incidence of ITP is slightly higher in adults and affects more women than men until 60 years, when males are more affected. Despite advances in basic science, primary ITP remains a diagnosis of exclusion. The disease is heterogeneous in its clinical behavior and response to treatment. This reflects the complex underlying pathophysiology, which remains ill-understood...
April 21, 2023: Medicina
https://read.qxmd.com/read/37107600/rna-sequencing-in-hypoxia-adapted-t98g-glioblastoma-cells-provides-supportive-evidence-for-ire1-as-a-potential-therapeutic-target
#40
JOURNAL ARTICLE
Brian E White, Yichuan Liu, Hakon Hakonarson, Russell J Buono
Glioblastoma (GBM) is an aggressive brain cancer with a median survival time of 14.6 months after diagnosis. GBM cells have altered metabolism and exhibit the Warburg effect, preferentially producing lactate under aerobic conditions. After standard-of-care treatment for GBM, there is an almost 100% recurrence rate. Hypoxia-adapted, treatment-resistant GBM stem-like cells are thought to drive this high recurrence rate. We used human T98G GBM cells as a model to identify differential gene expression induced by hypoxia and to search for potential therapeutic targets of hypoxia adapted GBM cells...
March 31, 2023: Genes
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