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https://www.readbyqxmd.com/read/28217858/golden-gate-assembly-system-dedicated-to-complex-pathway-manipulation-in-yarrowia-lipolytica
#1
Ewelina Celińska, Rodrigo Ledesma-Amaro, Macarena Larroude, Tristan Rossignol, Cyrille Pauthenier, Jean-Marc Nicaud
In this study, we have adopted Golden Gate modular cloning strategy to develop a robust and versatile DNA assembly platform for the nonconventional yeast Yarrowia lipolytica. To this end, a broad set of destination vectors and interchangeable building blocks have been constructed. The DNA modules were assembled on a scaffold of predesigned 4 nt overhangs covering three transcription units (each bearing promoter, gene and terminator), selection marker gene and genomic integration targeting sequences, constituting altogether thirteen elements...
February 19, 2017: Microbial Biotechnology
https://www.readbyqxmd.com/read/28217743/regulation-of-nitrogen-metabolism-by-gata-zinc-finger-transcription-factors-in-yarrowia-lipolytica
#2
Kyle R Pomraning, Erin L Bredeweg, Scott E Baker
Fungi accumulate lipids in a manner dependent on the quantity and quality of the nitrogen source on which they are growing. In the oleaginous yeast Yarrowia lipolytica, growth on a complex source of nitrogen enables rapid growth and limited accumulation of neutral lipids, while growth on a simple nitrogen source promotes lipid accumulation in large lipid droplets. Here we examined the roles of nitrogen catabolite repression and its regulation by GATA zinc finger transcription factors on lipid metabolism in Y...
January 2017: MSphere
https://www.readbyqxmd.com/read/28212656/using-a-vector-pool-containing-variable-strength-promoters-to-optimize-protein-production-in-yarrowia-lipolytica
#3
Rémi Dulermo, François Brunel, Thierry Dulermo, Rodrigo Ledesma-Amaro, Jérémy Vion, Marion Trassaert, Stéphane Thomas, Jean-Marc Nicaud, Christophe Leplat
BACKGROUND: The yeast Yarrowia lipolytica is an increasingly common biofactory. To enhance protein expression, several promoters have been developed, including the constitutive TEF promoter, the inducible POX2 promotor, and the hybrid hp4d promoter. Recently, new hp4d-inspired promoters have been created that couple various numbers of UAS1 tandem elements with the minimal LEU2 promoter or the TEF promoter. Three different protein-secretion signaling sequences can be used: preLip2, preXpr2, and preSuc2...
February 17, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28188651/the-torc1-sch9-rim15-signaling-pathway-represses-yeast-to-hypha-transition-in-response-to-glycerol-availability-in-the-oleaginous-yeast-yarrowia-lipolytica
#4
Shu-Heng Liang, Heng Wu, Rui-Rui Wang, Qiang Wang, Tao Shu, Xiang-Dong Gao
The yeast-to-hypha dimorphic transition is important for survival under nutrient starvation in fungi. The oleaginous yeast Yarrowia lipolytica grows in the oval-shaped yeast form in glycerol media whereas it adopts a filamentous form in glucose media. It is not clear why this yeast responds differently to glycerol and glucose. Here, we show that glycerol blocks dimorphic transition even in the presence of glucose whereas glycerol depletion induces filamentous growth, suggesting that dimorphic transition is repressed in response to glycerol availability...
February 11, 2017: Molecular Microbiology
https://www.readbyqxmd.com/read/28174563/metabolic-flexibility-of-yarrowia-lipolytica-growing-on-glycerol
#5
Michael Egermeier, Hannes Russmayer, Michael Sauer, Hans Marx
The yeast Yarrowia lipolytica is a fascinating microorganism with an amazing metabolic flexibility. This yeast grows very well on a wide variety of carbon sources from alkanes over lipids, to sugars and glycerol. Y. lipolytica accumulates a wide array of industrially relevant metabolites. It is very tolerant to many environmental factors, above all the pH value. It grows perfectly well over a wide pH range, but it has been described, that the pH has a decisive influence on the metabolite pattern accumulated by this yeast...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28168314/cocoa-butter-like-lipid-production-ability-of-non-oleaginous-and-oleaginous-yeasts-under-nitrogen-limited-culture-conditions
#6
Yongjun Wei, Verena Siewers, Jens Nielsen
Cocoa butter (CB) extracted from cocoa beans is the main raw material for chocolate production. However, growing chocolate demands and limited CB production has resulted in a shortage of CB supply. CB is mainly composed of three different kinds of triacylglycerols (TAGs), POP (C16:0-C18:1-C16:0), POS (C16:0-C18:1-C18:0), and SOS (C18:0-C18:1-C18:0). The storage lipids of yeasts, mainly TAGs, also contain relative high-level of C16 and C18 fatty acids and might be used as CB-like lipids (CBL). In this study, we cultivated six different yeasts, including one non-oleaginous yeast strain, Saccharomyces cerevisiae CEN...
February 6, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28152403/application-of-experimental-design-and-derivative-spectrophotometry-methods-in-optimization-and-analysis-of-biosorption-of-binary-mixtures-of-basic-dyes-from-aqueous-solutions
#7
Arash Asfaram, Mehrorang Ghaedi, Gholam Reza Ghezelbash, Francesco Pepe
Simultaneous biosorption of malachite green (MG) and crystal violet (CV) on biosorbent Yarrowia lipolytica ISF7 was studied. An appropriate derivative spectrophotometry technique was used to evaluate the concentration of each dye in binary solutions, despite significant interferences in visible light absorbances. The effects of pH, temperature, growth time, initial MG and CV concentration in batch experiments were assessed using Design of Experiment (DOE) according to central composite second order response surface methodology (RSM)...
January 30, 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28151056/%C3%AE-decalactone-production-by-yarrowia-lipolytica-and-lindnera-saturnus-in-crude-glycerol
#8
Géssyca P A Soares, Karla S T Souza, Leonardo F Vilela, Rosane F Schwan, Disney R Dias
Flavor compounds are commonly obtained from chemical synthesis or extracted from plants. These sources have disadvantages, such as racemic mixtures generation, more steps to yield the final product, low yield, and high cost, making the microbial fermentation an alternative and potential way to obtain flavor compounds. The most important lactone for flavor application is γ-decalactone, which has the aroma of peach, and can be obtained by ricinoleic acid biotransformation via yeast peroxisomal β-oxidation. The aim of this work was to use crude glycerol, a residual biodiesel industry, for the production of bioaroma from two different yeasts...
February 2, 2017: Preparative Biochemistry & Biotechnology
https://www.readbyqxmd.com/read/28143479/droplet-based-microfluidic-high-throughput-screening-of-heterologous-enzymes-secreted-by-the-yeast-yarrowia-lipolytica
#9
Thomas Beneyton, Stéphane Thomas, Andrew D Griffiths, Jean-Marc Nicaud, Antoine Drevelle, Tristan Rossignol
BACKGROUND: Droplet-based microfluidics is becoming an increasingly attractive alternative to microtiter plate techniques for enzymatic high-throughput screening (HTS), especially for exploring large diversities with lower time and cost footprint. In this case, the assayed enzyme has to be accessible to the substrate within the water-in-oil droplet by being ideally extracellular or displayed at the cell surface. However, most of the enzymes screened to date are expressed within the cytoplasm of Escherichia coli cells, which means that a lysis step must take place inside the droplets for enzyme activity to be assayed...
January 31, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28133596/hydrolysis-of-carotenoid-esters-from-tagetes-erecta-by-the-action-of-lipases-from-yarrowia-lipolytica
#10
Abraham Figueiras Abdala, Alfonso Pérez Gallardo, Lorenzo Guevara Olvera, Eleazar Máximo Escamilla Silva
The present study was conducted to evaluate the feasibility of enzymatic hydrolysis of carotenoid esters from Tagetes erecta using lipases from the yeast of Yarrowia lipolytica, with the aim of obtaining free lutein. The optimal concentrations of seven nutrients, considering the production of lipases relative to biomass (Yp/x) as the response variable, were determined in flask fermentations. In addition, we studied the effect on hydrolysis of growing Y. lipolytica in the presence of the oleoresin of the marigold flower in flask and stirred tank...
2017: Bioresources and Bioprocessing
https://www.readbyqxmd.com/read/28133594/online-flow-cytometry-an-interesting-investigation-process-for-monitoring-lipid-accumulation-dimorphism-and-cells-growth-in-the-oleaginous-yeast-yarrowia-lipolytica-jmy-775
#11
Doria Naila Bouchedja, Sabine Danthine, Tambi Kar, Patrick Fickers, Abdelghani Boudjellal, Frank Delvigne
This study aims to understand and better control the main biological mechanisms and parameters modulating the various phenomena affecting Yarrowia lipolytica JMY775 and its lipids accumulation. The results obtained in this study stress forward that the use of an original tool, consisting of coupling bioreactors to online flow cytometry, is highly efficient. Throughout 48 h of culturing, this emerging process allowed an online continuous observation of the effects of pH and/or aeration on the cell growth and dimorphism and lipid accumulation by Y...
2017: Bioresources and Bioprocessing
https://www.readbyqxmd.com/read/28130992/multi-responses-optimization-of-simultaneous-biosorption-of-cationic-dyes-by-live-yeast-yarrowia-lipolytica-70562-from-binary-solution-application-of-first-order-derivative-spectrophotometry
#12
Ebrahim Alipanahpour Dil, Mehrorang Ghaedi, Gholam Reza Ghezelbash, Arash Asfaram
Present study is based on application of live yeast Yarrowia lipolytica 70562 as new biosorbent was investigated for the simultaneous biosorption of Crystal Violet (CV) and Brilliant Green (BG) from wastewater. The effect of operating parameters such as initial dye concentrations (6-14mgL(-1)), solution pH (4.0-8.0) and contact time (4-20h) was investigated by response surface methodology (RSM) for modeling and optimization of biosorption process and accordingly the best operational conditions was set as: initial CV and BG concentration of 8...
January 25, 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28107178/influence-of-structure-of-lactones-with-the-methylcyclohexene-and-dimethylcyclohexene-ring-on-their-biotransformation-and-antimicrobial-activity
#13
Katarzyna Wińska, Małgorzata Grabarczyk, Wanda Mączka, Barbara Żarowska, Gabriela Maciejewska, Mirosław Anioł
The aim of this article is influence of the structure of lactones with the methylcyclohexene and dimethylcyclohexene ring on their biotransformation and antimicrobial activity. This work was based on the general remark that even the smallest change in the structure of a compound can affect its biological properties. The results of the biotransformation of four bicyclic unsaturated lactones with one or two methyl groups in the cyclohexene ring was tested using fifteen fungal strains (Fusarium species, Penicillium species, Absidia species, Cunninghamella japonica, and Pleurotus ostreatus) and five yeast strains (Yarrowia lipolytica, Rhodorula marina, Rhodorula rubra, Candida viswanathii, and Saccharomyces cerevisiae)...
January 20, 2017: Zeitschrift Für Naturforschung. C, A Journal of Biosciences
https://www.readbyqxmd.com/read/28092657/lipid-production-in-yarrowia-lipolytica-is-maximized-by-engineering-cytosolic-redox-metabolism
#14
Kangjian Qiao, Thomas M Wasylenko, Kang Zhou, Peng Xu, Gregory Stephanopoulos
Microbial factories have been engineered to produce lipids from carbohydrate feedstocks for production of biofuels and oleochemicals. However, even the best yields obtained to date are insufficient for commercial lipid production. To maximize the capture of electrons generated from substrate catabolism and thus increase substrate-to-product yields, we engineered 13 strains of Yarrowia lipolytica with synthetic pathways converting glycolytic NADH into the lipid biosynthetic precursors NADPH or acetyl-CoA. A quantitative model was established and identified the yield of the lipid pathway as a crucial determinant of overall process yield...
February 2017: Nature Biotechnology
https://www.readbyqxmd.com/read/28066508/a-molecular-genetic-toolbox-for-yarrowia-lipolytica
#15
Erin L Bredeweg, Kyle R Pomraning, Ziyu Dai, Jens Nielsen, Eduard J Kerkhoven, Scott E Baker
BACKGROUND: Yarrowia lipolytica is an ascomycete yeast used in biotechnological research for its abilities to secrete high concentrations of proteins and accumulate lipids. Genetic tools have been made in a variety of backgrounds with varying similarity to a comprehensively sequenced strain. RESULTS: We have developed a set of genetic and molecular tools in order to expand capabilities of Y. lipolytica for both biological research and industrial bioengineering applications...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28064038/characterization-of-hexose-transporters-in-yarrowia-lipolytica-reveals-new-groups-of-sugar-porters-involved-in-yeast-growth
#16
Zbigniew Lazar, Cécile Neuvéglise, Tristan Rossignol, Hugo Devillers, Nicolas Morin, Małgorzata Robak, Jean-Marc Nicaud, Anne-Marie Crutz-Le Coq
Sugar assimilation has been intensively studied in the model yeast S. cerevisiae, and for two decades, it has been clear that the homologous HXT genes, which encode a set of hexose transporters, play a central role in this process. However, in the yeast Yarrowia lipolytica, which is well-known for its biotechnological applications, sugar assimilation is only poorly understood, even though this yeast exhibits peculiar intra-strain differences in fructose uptake: some strains (e.g., W29) are known to be slow-growing in fructose while others (e...
January 5, 2017: Fungal Genetics and Biology: FG & B
https://www.readbyqxmd.com/read/28052085/exploiting-bioprocessing-fluctuations-to-elicit-the-mechanistics-of-de-novo-lipogenesis-in-yarrowia-lipolytica
#17
Andreas E Vasdekis, Andrew M Silverman, Gregory Stephanopoulos
Despite substantial achievements in elucidating the metabolic pathways of lipogenesis, a mechanistic representation of lipid accumulation and degradation has not been fully attained to-date. Recent evidence suggests that lipid accumulation can occur through increases of either the cytosolic copy-number of lipid droplets (LDs), or the LDs size. However, the prevailing phenotype, or how such mechanisms pertain to lipid degradation remain poorly understood. To address this shortcoming, we employed the-recently discovered-innate bioprocessing fluctuations in Yarrowia lipolytica, and performed single-cell fluctuation analysis using optical microscopy and microfluidics that generate a quasi-time invariant microenvironment...
2017: PloS One
https://www.readbyqxmd.com/read/28042081/two-short-peptidoglycan-recognition-proteins-from-crassostrea-gigas-with-similar-structure-exhibited-different-pamp-binding-activity
#18
Chuanyan Yang, Lingling Wang, Zhihao Jia, Qilin Yi, Qingsong Xu, Weilin Wang, Changhao Gong, Conghui Liu, Linsheng Song
Peptidoglycan recognition protein (PGRP) is an essential molecule in innate immunity for both invertebrates and vertebrates, owing to its prominent ability in specifically recognizing bacterial peptidoglycan (PGN) and eliminating the invading bacteria. In the present study, the full length cDNA of two PGRP genes, CgPGRPS2 and CgPGRPS4, were cloned from oyster Crassostrea gigas. Their amino acid sequences both contained one signal peptide, one typical PGRP/amidase domain with conserved catalytic residues responsible for amidase activity (55H, 90Y, 164H, 172C in CgPGRPS2, and 98H, 133Y, 207H, 215C in CgPGRPS4), and specific PGN recognition (84R, 85W, 104R, 109V in CgPGRPS2, and 127G, 128W, 147R, 152V in CgPGRPS4), and they shared 55...
December 30, 2016: Developmental and Comparative Immunology
https://www.readbyqxmd.com/read/28031252/compound-heterozygosity-for-severe-and-hypomorphic-ndufs2-mutations-cause-non-syndromic-lhon-like-optic-neuropathy
#19
Sylvie Gerber, Martina G Ding, Xavier Gérard, Klaus Zwicker, Xavier Zanlonghi, Marlène Rio, Valérie Serre, Sylvain Hanein, Arnold Munnich, Agnès Rotig, Lucas Bianchi, Patrizia Amati-Bonneau, Orly Elpeleg, Josseline Kaplan, Ulrich Brandt, Jean-Michel Rozet
BACKGROUND: Non-syndromic hereditary optic neuropathy (HON) has been ascribed to mutations in mitochondrial fusion/fission dynamics genes, nuclear and mitochondrial DNA-encoded respiratory enzyme genes or nuclear genes of poorly known mitochondrial function. However, the disease causing gene remains unknown in many families. The objective of the present study was to identify the molecular cause of non-syndromic LHON-like disease in siblings born to non-consanguineous parents of French origin...
December 28, 2016: Journal of Medical Genetics
https://www.readbyqxmd.com/read/28012044/a-survey-of-yeast-from-the-yarrowia-clade-for-lipid-production-in-dilute-acid-pretreated-lignocellulosic-biomass-hydrolysate
#20
Josh Quarterman, Patricia J Slininger, Cletus P Kurtzman, Stephanie R Thompson, Bruce S Dien
Yarrowia lipolytica is an oleaginous yeast species that has attracted attention as a model organism for synthesis of single cell oil. Among over 50 isolates of Y. lipolytica identified, only a few of the strains have been studied extensively. Furthermore, 12 other yeast species were recently assigned to the Yarrowia clade, and most are not well characterized in terms of cell growth and lipid accumulation, especially in industrially relevant conditions. In the present study, we investigated biomass and lipid production by 57 yeast isolates, representing all 13 species in the Yarrowia clade, on a non-detoxified dilute acid-pretreated switchgrass hydrolysate under highly aerobic conditions...
December 23, 2016: Applied Microbiology and Biotechnology
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