keyword
https://read.qxmd.com/read/38652336/three-new-discovery-effector-proteins-from-candidatus-liberibacter-asiaticus-psy62-inhibit-plant-defense-through-interaction-with-atcat3-and-atgapa
#1
JOURNAL ARTICLE
Xue Li, Zetian Guo, Yue Zhou, Baihong Zhang, Huaqin Ruan, Wenli Chen
We identify three SDEs that inhibiting host defence from Candidatus Liberibacter asiaticus psy62, which is an important supplement to the pathogenesis of HLB. Candidatus Liberibacter asiaticus (CLas) is the main pathogen of citrus Huanglongbing (HLB). 38 new possible sec-dependent effectors (SDEs) of CLas psy62 were predicted by updated predictor SignalP 5.0, which 12 new SDEs were found using alkaline phosphate assay. Among them, SDE4310, SDE4435 and SDE4955 inhibited hypersensitivity reactions (HR) in Arabidopsis thaliana (Arabidopsis, At) and Nicotiana benthamiana leaves induced by pathogens, which lead to a decrease in cell death and reactive oxygen species (ROS) accumulation...
April 23, 2024: Plant Cell Reports
https://read.qxmd.com/read/38650928/gut-microbiome-t-cell-subsets-and-cytokine-analysis-identify-differential-biomarkers-in-tuberculosis
#2
JOURNAL ARTICLE
Yinghui Chai, Xin Liu, Guangliang Bai, Nannan Zhou, Danfeng Liu, Xiaomeng Zhang, Min Li, Kang Li, Hong Lei
INTRODUCTION: The gut microbiota, T cell subsets, and cytokines participate in tuberculosis (TB) pathogenesis. To date, the mechanisms by which these factors interactively promote TB development at different time points remain largely unclear. In the context of this study, We looked into the microorganisms in the digestive tract, T cell types, and cytokines related to tuberculosis. METHODS: According to QIIME2, we analyzed 16SrDNA sequencing of the gut microbiome on the Illumina MiSeq...
2024: Frontiers in Immunology
https://read.qxmd.com/read/38650589/explainable-machine-learning-model-for-identifying-key-gut-microbes-and-metabolites-biomarkers-associated-with-myasthenia-gravis
#3
JOURNAL ARTICLE
Che-Cheng Chang, Tzu-Chi Liu, Chi-Jie Lu, Hou-Chang Chiu, Wei-Ning Lin
Diagnostic markers for myasthenia gravis (MG) are limited; thus, innovative approaches are required for supportive diagnosis and personalized care. Gut microbes are associated with MG pathogenesis; however, few studies have adopted machine learning (ML) to identify the associations among MG, gut microbiota, and metabolites. In this study, we developed an explainable ML model to predict biomarkers for MG diagnosis. We enrolled 19 MG patients and 10 non-MG individuals. Stool samples were collected and microbiome assessment was performed using 16S rRNA sequencing...
December 2024: Computational and Structural Biotechnology Journal
https://read.qxmd.com/read/38650043/correlation-of-lesion-severity-with-bacterial-changes-in-treponeme-associated-hoof-disease-from-free-roaming-wild-elk-cervus-canadensis
#4
JOURNAL ARTICLE
Jennifer H Wilson-Welder, Sushan Han, Darrell O Bayles, David P Alt, Carly Kanipe, Kyle Garrison, Kristin G Mansfield, Steven C Olsen
BACKGROUND: Treponeme-Associated Hoof Disease (TAHD) is a polybacterial, multifactorial disease affecting free-ranging wild elk (Cervus canadensis) in the Pacific Northwest. Previous studies have indicated a bacterial etiology similar to digital dermatitis in livestock, including isolation of Treponema species from lesions. The lesions appear to progress rapidly from ulcerative areas in the interdigital space or along the coronary band to severe, ulcerative, necrotic, proliferative lesions under-running the hoof wall, perforating the sole, and contributing to hoof elongation, deformity, and overgrowth...
April 22, 2024: Animal microbiome
https://read.qxmd.com/read/38649221/pathophysiology-of-hepatorenal-syndrome
#5
REVIEW
Juan Carlos Q Velez, Nyan Latt, Roger A Rodby
Hepatorenal syndrome type 1 (HRS-1) is a unique form of acute kidney injury that affects individuals with decompensated cirrhosis with ascites. The primary mechanism leading to reduction of kidney function in HRS-1 is hemodynamic in nature. Cumulative evidence points to a cascade of events that led to a profound reduction in kidney perfusion. A state of increased intrahepatic vascular resistance characteristic of advanced cirrhosis and portal hypertension is accompanied by maladaptive peripheral arterial vasodilation and reduction in systemic vascular resistance and mean arterial pressure...
March 2024: Adv Kidney Dis Health
https://read.qxmd.com/read/38648495/fecal-microbiota-is-associated-with-extraintestinal-manifestations-in-inflammatory-bowel-disease
#6
JOURNAL ARTICLE
Sandra Hertz, Jacqueline Moltzau Anderson, Hans Linde Nielsen, Claire Schachtschneider, Kathryn E McCauley, Mustafa Özçam, Lone Larsen, Susan V Lynch, Henrik Nielsen
INTRODUCTION: A large proportion of patients with inflammatory bowel disease (IBD) experience IBD-related inflammatory conditions outside of the gastrointestinal tract, termed extraintestinal manifestations (EIMs) which further decreases quality of life and, in extreme cases, can be life threatening. The pathogenesis of EIMs remains unknown, and although gut microbiota alterations are a well-known characteristic of patients with IBD, its relationship with EIMs remains sparsely investigated...
December 2024: Annals of Medicine
https://read.qxmd.com/read/38647313/the-nucleoid-protein-hu-positively-regulates-the-expression-of-type-vi-secretion-systems-in-enterobacter-cloacae
#7
JOURNAL ARTICLE
Gabriela Hernández-Martínez, Miguel A Ares, Roberto Rosales-Reyes, Jorge Soria-Bustos, Jorge Antonio Yañez-Santos, María L Cedillo, Jorge A Girón, Ygnacio Martínez-Laguna, Fenfei Leng, J Antonio Ibarra, Miguel A De la Cruz
UNLABELLED: Enterobacter cloacae is an emerging pathogen isolated in healthcare-associated infections. A major virulence factor of this bacterium is the type VI secretion system (T6SS). The genome of E. cloacae harbors two T6SS gene clusters (T6SS-1 and T6SS-2), and the functional characterization of both systems showed that these two T6SSs are not expressed under the same conditions. Here, we report that the major histone-like protein HU positively regulates the expression of both T6SSs and, therefore, the function that each T6SS exerts in E...
April 22, 2024: MSphere
https://read.qxmd.com/read/38645013/intact-and-degenerate-diguanylate-cyclases-regulate-shigella-cyclic-di-gmp
#8
Ruchi Ojha, Stefanie Krug, Prentiss Jones, Benjamin J Koestler
The intracellular human pathogen Shigella invades the colonic epithelium to cause disease. Prior to invasion, this bacterium navigates through different environments within the human body, including the stomach and the small intestine. To adapt to changing environments, Shigella uses the bacterial second messenger c-di-GMP signaling system, synthesized by diguanylate cyclases (DGCs) encoding GGDEF domains. Shigella flexneri encodes a total of 9 GGDEF or GGDEF-EAL domain enzymes in its genome, but 5 of these genes have acquired mutations that presumably inactivated the c-di-GMP synthesis activity of these enzymes...
April 8, 2024: bioRxiv
https://read.qxmd.com/read/38644830/-klebsiella-pneumoniae-omvs-activate-death-signaling-pathways-in-human-bronchial-epithelial-host-cells-beas-2b
#9
JOURNAL ARTICLE
Federica Dell'Annunziata, Elena Ciaglia, Veronica Folliero, Valentina Lopardo, Anna Maciag, Massimiliano Galdiero, Annibale Alessandro Puca, Gianluigi Franci
The programmed cell death pathways of apoptosis are important in mammalian cellular protection from infections. The activation of these pathways depends on the presence of membrane receptors that bind bacterial components to activate the transduction mechanism. In addition to bacteria, these mechanisms can be activated by outer membrane vesicles (OMVs). OMVs are spherical vesicles of 20-250 nm diameter, constitutively released by Gram-negative bacteria. They contain several bacterial determinants including proteins, DNA/RNA and proteins, that activate different cellular processes in host cells...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38643523/induction-of-ferroptosis-a-new-strategy-for-the-control-of-bacterial-infections
#10
REVIEW
Rongxian Guo, Xin Fang, Ke Shang, Jiachen Wen, Ke Ding
The continued rise of drug-resistant bacterial infections heightens a threat of a pandemic of antimicrobial resistance to the global health. The urgency of infection control against antimicrobial-resistant bacteria is evident. Ferroptosis, a newly defined form of iron-dependent cell death characterized by lipid peroxidation, has garnered substantial interest since this programmed cell death was associated with pathophysiological processes of many diseases. Exploring whether ferroptosis could be utilized in infectious diseases holds significant importance for discovering novel antimicrobial approaches...
April 17, 2024: Microbiological Research
https://read.qxmd.com/read/38642744/page-a-bidirectional-mendelian-randomization-study-of-gut-microbiota-and-cerebral-small-vessel-disease
#11
JOURNAL ARTICLE
Chaojuan Huang, Yuyang Zhang, Yan Liu, Man Zhang, Zhiwei Li, Mingxu Li, Mengmeng Ren, Jiabin Yin, Yajun Zhou, Xia Zhou, Xiaoqun Zhu, Zhongwu Sun
BACKGROUND: The causal nature of gut microbiota and cerebral small vessel disease (CSVD) is still obscure regardless of evidence supporting their observational correlations. OBJECTIVE: The primary objective of this research is to investigate the potentially pathogenic or protective causal impacts of specific gut microbiota on various neuroimaging subtypes of CSVD. METHODS: We obtained the latest summary-level genome-wide databases for gut microbiota and nine CSVD traits...
April 18, 2024: Journal of Nutrition
https://read.qxmd.com/read/38641280/unveiling-the-ocular-battlefield-insights-into-pseudomonas-aeruginosa-virulence-factors-and-their-implications-for-multidrug-resistance
#12
JOURNAL ARTICLE
Nandagopal Murugan, Rajapandiyan Krishnamoorthy, Javed Masood Khan, Mansour K Gatasheh, Jambulingam Malathi, Hajib Narahari Rao Madhavan, Gopinath Ramalingam, Selvaraj Jayaramana
The research investigates the virulence factors of Pseudomonas aeruginosa (P. aeruginosa), a pathogen known for its ability to cause human infections by releasing various exoenzymes and virulence factors. Particularly relevant in ocular infections, where tissue degeneration can occur, even after bacterial growth has ceased due to the potential role of secreted proteins/enzymes. Clinical isolates of P. aeruginosa, both ocular (146) and non-ocular (54), were examined to determine the frequency and mechanism of virulence factors...
April 17, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38641217/pathological-variations-and-immune-response-in-channa-argus-infected-with-pathogenic-nocardia-seriolae-strain
#13
JOURNAL ARTICLE
Tingting Zhou, Ping Cai, Junwei Li, Xueming Dan, Zhongsheng Li
Nocardia seriolae pathogen causes chronic granulomatous disease, reportedly affecting over 40 species of marine and freshwater cultured fish. Hence, research is required to address and eliminate this significant threat to the aquaculture industry. In this respect, a reliable and reproducible infection model needs to be established to better understand the biology of this pathogen and its interactions with the host during infection, as well as to develop new vaccines or other effective treatment methods. In this study, we examined the pathogenicity of the pathogen and the immune response of snakehead (Channa argus) juvenile to N...
April 17, 2024: Fish & Shellfish Immunology
https://read.qxmd.com/read/38641070/jellyfish-protein-hydrolysates-multifunctional-bioactivities-unveiled-in-the-battle-against-diabetes-inflammation-and-bacterial-pathogenesis
#14
JOURNAL ARTICLE
Noora Barzkar, Pinchuta Bunphueak, Phumin Chamsodsai, Pratchaya Muangrod, Benjawan Thumthanaruk, Vilai Rungsardthong, Lueacha Tabtimmai
This study investigates the multifunctional bioactivities of pepsin-hydrolyzed jellyfish by-products (Rhopilema hispidum and Lobonema smithii), focusing on their anti-α-glucosidase activity, anti-inflammatory effects, anti-bacterial properties, and ability to inhibit biofilm formation of Staphylococcus aureus. Our findings revealed that jellyfish protein hydrolysates, particularly from Rhopilema hispidum, exhibit significant anti-α-glucosidase activity, surpassing the well-known α-glucosidase inhibitor Acarbose...
April 17, 2024: Microbial Pathogenesis
https://read.qxmd.com/read/38639082/advances-in-hydrogels-for-periodontitis-treatment
#15
REVIEW
Qiqi Li, Di Wang, Chunsheng Xiao, Hao Wang, Shujun Dong
Periodontitis is a common condition characterized by a bacterial infection and the disruption of the body's immune-inflammatory response, which causes damage to the teeth and supporting tissues and eventually results in tooth loss. Current therapy involves the systemic and local administration of antibiotics. However, the existing treatments cannot exert effective, sustained release and maintain an effective therapeutic concentration of the drug at the lesion site. Hydrogels are used to treat periodontitis due to their low cytotoxicity, exceptional water retention capability, and controlled drug release profile...
April 19, 2024: ACS Biomaterials Science & Engineering
https://read.qxmd.com/read/38638832/current-progresses-and-challenges-for-microbiome-research-in-human-health-a-perspective
#16
JOURNAL ARTICLE
Simone Filardo, Marisa Di Pietro, Rosa Sessa
It is becoming increasingly clear that the human microbiota, also known as "the hidden organ", possesses a pivotal role in numerous processes involved in maintaining the physiological functions of the host, such as nutrient extraction, biosynthesis of bioactive molecules, interplay with the immune, endocrine, and nervous systems, as well as resistance to the colonization of potential invading pathogens. In the last decade, the development of metagenomic approaches based on the sequencing of the bacterial 16s rRNA gene via Next Generation Sequencing, followed by whole genome sequencing via third generation sequencing technologies, has been one of the great advances in molecular biology, allowing a better profiling of the human microbiota composition and, hence, a deeper understanding of the importance of microbiota in the etiopathogenesis of different pathologies...
2024: Frontiers in Cellular and Infection Microbiology
https://read.qxmd.com/read/38637685/tusdcb-a-sulfur-transferase-complex-involved-in-trna-modification-contributes-to-upec-pathogenicity
#17
JOURNAL ARTICLE
Yumika Sato, Ayako Takita, Kazutomo Suzue, Yusuke Hashimoto, Suguru Hiramoto, Masami Murakami, Haruyoshi Tomita, Hidetada Hirakawa
tRNA modifications play a crucial role in ensuring accurate codon recognition and optimizing translation levels. While the significance of these modifications in eukaryotic cells for maintaining cellular homeostasis and physiological functions is well-established, their physiological roles in bacterial cells, particularly in pathogenesis, remain relatively unexplored. The TusDCB protein complex, conserved in γ-proteobacteria like Escherichia coli, is involved in sulfur modification of specific tRNAs. This study focused on the role of TusDCB in the virulence of uropathogenic E...
April 18, 2024: Scientific Reports
https://read.qxmd.com/read/38636809/incretin-hormones-obesity-and-gut-microbiota
#18
JOURNAL ARTICLE
Giulia Angelini, Sara Russo, Geltrude Mingrone
Over the past 40 years, the prevalence of obesity has risen dramatically, reaching epidemic proportions. By 2030 the number of people affected by obesity will reach 1.12 billion worldwide. Gastrointestinal hormones, namely incretins, play a vital role in the pathogenesis of obesity and its comorbidities. GIP (glucose-dependent insulinotropic polypeptide) and GLP-1 (glucagon-like peptide-1), which are secreted from the intestine after nutrient intake and stimulate insulin secretion from pancreatic β cells, influence lipid metabolism, gastric empting, appetite and body weight...
April 16, 2024: Peptides
https://read.qxmd.com/read/38635627/temporal-and-spatial-dynamics-of-listeria-monocytogenes-central-nervous-system-infection-in-mice
#19
JOURNAL ARTICLE
Victoria Chevée, Karthik Hullahalli, Katherine G Dailey, Leslie Güereca, Chenyu Zhang, Matthew K Waldor, Daniel A Portnoy
Listeria monocytogenes is a bacterial pathogen that can cause life-threatening central nervous system (CNS) infections. While mechanisms by which L. monocytogenes and other pathogens traffic to the brain have been studied, a quantitative understanding of the underlying dynamics of colonization and replication within the brain is still lacking. In this study, we used barcoded L. monocytogenes to quantify the bottlenecks and dissemination patterns that lead to cerebral infection. Following intravenous (IV) inoculation, multiple independent invasion events seeded all parts of the CNS from the blood, however, only one clone usually became dominant in the brain...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38632320/assessing-causal-relationships-between-gut-microbiota-and-psoriasis-evidence-from-two-sample-mendelian-randomization-analysis
#20
JOURNAL ARTICLE
Yuan Li, Gaihe Chen, Xiaohuan Hu, Yunlei Bao, Chuyan Wu, Ni Zeng, Feng Jiang
Mounting data hints that the gut microbiota's role may be pivotal in understanding the emergence of psoriasis. However, discerning a direct causal link is yet elusive. In this exploration, we adopted a Mendelian randomization (MR) strategy to probe the prospective causal interplay between the gut's microbial landscape and the predisposition to psoriasis. Genetic markers acting as instrumental variables for gut microbiota were extrapolated from a genome-wide association study (GWAS) encompassing 18,340 individuals...
April 17, 2024: Scientific Reports
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