keyword
https://read.qxmd.com/read/36176767/base-excision-repair-accessory-factors-in-senescence-avoidance-and-resistance-to-treatments
#21
REVIEW
Elise Vickridge, Camila C F Faraco, Alain Nepveu
Cancer cells, in which the RAS and PI3K pathways are activated, produce high levels of reactive oxygen species (ROS), which cause oxidative DNA damage and ultimately cellular senescence. This process has been documented in tissue culture, mouse models, and human pre-cancerous lesions. In this context, cellular senescence functions as a tumour suppressor mechanism. Some rare cancer cells, however, manage to adapt to avoid senescence and continue to proliferate. One well-documented mode of adaptation involves increased production of antioxidants often associated with inactivation of the KEAP1 tumour suppressor gene and the resulting upregulation of the NRF2 transcription factor...
2022: Cancer Drug Resistance
https://read.qxmd.com/read/36085558/longitudinal-alterations-of-cortical-structural-functional-coupling-in-temporal-lobe-epilepsy
#22
JOURNAL ARTICLE
Zexiang Chen, Binglin Fan, Linlin Pang, Minda Wei, Caitiao Lv, Jinou Zheng
BACKGROUND AND PURPOSE: To investigate the longitudinal alterations of cortical structural-functional coupling (SF coupling) in patients with temporal lobe epilepsy (TLE) over a 2-year follow-up, thereby exploring the neuropathophysiological mechanisms of TLE. METHODS: Twenty-eight TLE patients and 42 age- and gender-matched healthy controls (HCs) were recruited. We used resting-state functional MRI and diffusion-weighted imaging to estimate and compare SF coupling at the multiscale network level (whole-brain, modular, and regional levels)...
September 9, 2022: Journal of Neuroimaging: Official Journal of the American Society of Neuroimaging
https://read.qxmd.com/read/35881915/cux2-kdm5b-sox17-axis-affects-the-occurrence-and-development-of-breast-cancer
#23
JOURNAL ARTICLE
Lili Li, Genbao Zhu, Kemeng Tan, La Jiang, Yafen Li, Xiaohong Zhu, Zongwu Lin, Xinghai Zhang, Jie Chen, Chengquan Ma
OBJECTIVE: Abnormal expression of CUT-like homeobox 2 gene (CUX2) has been highlighted as potential clinical biomarkers in human cancers. Notably, the function of CUX2 has been less elucidated in breast cancer (BC). We focused on the role of the CUX2 in tumorigenesis and progression of BC with the involvement of the lysine demethylase 5B (KDM5B)/sex determining region Y-box 17 (SOX17) axis. METHODS: CUX2, KDM5B, and SOX17 expression levels in BC tissues and cells were tested by reverse transcription quantitative PCR and Western blotting...
September 1, 2022: Endocrinology
https://read.qxmd.com/read/35846140/novel-variant-expands-the-clinical-spectrum-of-cux2-associated-developmental-and-epileptic-encephalopathies
#24
JOURNAL ARTICLE
Feng Zhang, Fuwei Li, Fujian Chen, Jinrong Huang, Qiong Luo, Xilong Du, Jiapeng Zhou, Weiyue Gu, Kaishou Xu
Developmental and epileptic encephalopathies (DEE) caused by heterozygous deleterious variants in Cut Like Homeobox2 ( CUX2 ) is rare. To the best of our knowledge the only variant associated with a phenotype in this gene is the de novo missense variant c.1768G > A, p.Glu590Lys; however, further additional research is needed to characterize the relationship between disease and variants in this gene. In this study, we reported a patient from a non-consanguineous Chinese family presenting with epilepsy, developmental delay, and speech delay...
2022: Frontiers in Genetics
https://read.qxmd.com/read/35807331/novel-copper-ii-complexes-with-dipinodiazafluorene-ligands-synthesis-structure-magnetic-and-catalytic-properties
#25
JOURNAL ARTICLE
Iakov S Fomenko, Medhanie Afewerki, Marko I Gongola, Eugene S Vasilyev, Lidia S Shul'pina, Nikolay S Ikonnikov, Georgiy B Shul'pin, Denis G Samsonenko, Vadim V Yanshole, Vladimir A Nadolinny, Alexander N Lavrov, Alexey V Tkachev, Artem L Gushchin
The reactions of CuX2 (X = Cl, Br) with dipinodiazafluorenes yielded four new complexes [CuX2 L1 ]2 (X = Cl ( 1 ), Br ( 2 ), L1 = (1R,3R,8R,10R)-2,2,9,9-Tetramethyl-3,4,7,8,9,10-hexahydro-1H-1,3:8,10-dimethanocyclopenta [1,2-b:5,4-b']diquinolin-12(2H)-one) and [(CuX2 )2 L2 ]n (X = Cl ( 3 ), Br ( 4 ), L2 = (1R,3R,8R,10R,1'R,3'R,8'R,10'R)-2,2,2',2',9,9,9',9'-Octamethyl-1,1',2,2',3,3',4,4',7,7',8,8',9,9',10,10'-hexadecahydro-1,3:1',3':8,10:8',10'-tetramethano-12,12'-bi(cyclopenta [1,2-b:5,4-b']diquinolinylidene)...
June 24, 2022: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/35720126/comprehensive-analyses-of-ferroptosis-related-alterations-and-their-prognostic-significance-in-glioblastoma
#26
JOURNAL ARTICLE
Yuan Tian, Hongtao Liu, Caiqing Zhang, Wei Liu, Tong Wu, Xiaowei Yang, Junyan Zhao, Yuping Sun
Background: This study was designed to explore the implications of ferroptosis-related alterations in glioblastoma patients. Method: After obtaining the data sets CGGA325, CGGA623, TCGA-GBM, and GSE83300 online, extensive analysis and mutual verification were performed using R language-based analytic technology, followed by further immunohistochemistry staining verification utilizing clinical pathological tissues. Results: The analysis revealed a substantial difference in the expression of ferroptosis-related genes between malignant and paracancerous samples, which was compatible with immunohistochemistry staining results from clinicopathological samples...
2022: Frontiers in Molecular Biosciences
https://read.qxmd.com/read/35606902/transcriptomic-analyses-of-neurod1-mediated-astrocyte-to-neuron-conversion
#27
JOURNAL ARTICLE
Ning-Xin Ma, Brendan Puls, Gong Chen
Ectopic expression of a single neural transcription factor NeuroD1 can reprogram reactive glial cells into functional neurons both in vitro and in vivo, but the underlying mechanisms are not well understood yet. Here, we used RNA-sequencing technology to capture the transcriptomic changes at different time points during the reprogramming process. We found that following NeuroD1 overexpression, astroglial genes (ACTG1, ALDH1A3, EMP1, CLDN6, SOX21) were significantly downregulated, whereas neuronal genes (DCX, RBFOX3/NeuN, CUX2, RELN, SNAP25) were significantly upregulated...
July 2022: Developmental Neurobiology
https://read.qxmd.com/read/35581205/cux2-deficiency-causes-facilitation-of-excitatory-synaptic-transmission-onto-hippocampus-and-increased-seizure-susceptibility-to-kainate
#28
JOURNAL ARTICLE
Toshimitsu Suzuki, Tetsuya Tatsukawa, Genki Sudo, Caroline Delandre, Yun Jin Pai, Hiroyuki Miyamoto, Matthieu Raveau, Atsushi Shimohata, Iori Ohmori, Shin-Ichiro Hamano, Kazuhiro Haginoya, Mitsugu Uematsu, Yukitoshi Takahashi, Masafumi Morimoto, Shinji Fujimoto, Hitoshi Osaka, Hirokazu Oguni, Makiko Osawa, Atsushi Ishii, Shinichi Hirose, Sunao Kaneko, Yushi Inoue, Adrian Walton Moore, Kazuhiro Yamakawa
CUX2 gene encodes a transcription factor that controls neuronal proliferation, dendrite branching and synapse formation, locating at the epilepsy-associated chromosomal region 12q24 that we previously identified by a genome-wide association study (GWAS) in Japanese population. A CUX2 recurrent de novo variant p.E590K has been described in patients with rare epileptic encephalopathies and the gene is a candidate for the locus, however the mutation may not be enough to generate the genome-wide significance in the GWAS and whether CUX2 variants appear in other types of epilepsies and physiopathological mechanisms are remained to be investigated...
May 17, 2022: Scientific Reports
https://read.qxmd.com/read/35368701/identification-of-tissue-specific-expressed-hub-genes-and-potential-drugs-in-rheumatoid-arthritis-using-bioinformatics-analysis
#29
JOURNAL ARTICLE
Xuewu Xing, Qun Xia, Baoqi Gong, Zhongyang Shen, Yingze Zhang
Background: Rheumatoid arthritis (RA) is a common autoimmune disease characterized by progressive, destructive polyarthritis. However, the cause and underlying molecular events of RA are not clear. Here, we applied integrated bioinformatics to identify tissue-specific expressed hub genes involved in RA and reveal potential targeted drugs. Methods: Three expression profiles of human microarray datasets involving fibroblast-like synoviocytes (FLS) were downloaded from the Gene Expression Omnibus (GEO) database, the differentially expressed mRNAs (DEGs), miRNAs (DEMs), and lncRNAs (DELs) between normal and RA synovial samples were screened using GEO2R tool...
2022: Frontiers in Genetics
https://read.qxmd.com/read/35333267/structural-properties-of-cu-ii-3-l-6-cages-bridged-polyatomic-anion-effects-on-unprecedented-efficiency-of-heterogeneous-catechol-oxidation
#30
JOURNAL ARTICLE
Doheon Kim, Geonwoo Gwak, Jihun Han, Dongwon Kim, Ok-Sang Jung
Self-assembly of CuX2 (X- = BF4 - , ClO4 - , PF6 - , and SbF6 - ) with a bidentate ethylmethylbis(3-pyridine)silane ligand (L) in the presence of additional polyatomic anions (X' = SiF6 2- and PF6 - ) gives rise to single crystals consisting of the X'@[Cu(II)3 L6 ] cage motif. These cages exist as discrete or anion-bridged 3D networks depending on outside anions. The anion-bridged 3D networks interpenetrate in a four-fold fashion, and show, to our best knowledge, the most effective heterogeneous catalysis in 3,5-di- tert -butylcatechol oxidation reaction within 20 min at room temperature...
March 25, 2022: Dalton Transactions: An International Journal of Inorganic Chemistry
https://read.qxmd.com/read/35309325/a-systematic-review-of-tissue-and-single-cell-transcriptome-proteome-studies-of-the-brain-in-multiple-sclerosis
#31
Maria L Elkjaer, Richard Röttger, Jan Baumbach, Zsolt Illes
Multiple sclerosis (MS) is an inflammatory demyelinating and degenerative disease of the central nervous system (CNS). Although inflammatory responses are efficiently treated, therapies for progression are scarce and suboptimal, and biomarkers to predict the disease course are insufficient. Cure or preventive measures for MS require knowledge of core pathological events at the site of the tissue damage. Novelties in systems biology have emerged and paved the way for a more fine-grained understanding of key pathological pathways within the CNS, but they have also raised questions still without answers...
2022: Frontiers in Immunology
https://read.qxmd.com/read/34854694/cascade-ring-opening-dual-halogenation-of-cyclopropenones-with-saturated-oxygen-heterocycles
#32
JOURNAL ARTICLE
Wei-Hang Miao, Wen-Xia Gao, Xiao-Bo Huang, Miao-Chang Liu, Yun-Bing Zhou, Hua-Yue Wu
Represented is a CuX2 - or I2 -promoted ring-opening dual halogenation of cyclopropenones with saturated oxygen heterocycles, providing an efficient method for the synthesis of 3-haloacrylates. The ring-opening reaction enables the construction of two C-X (X = Cl, Br, or I) bonds and a C-O bond as well as the cleavage of two C-O bonds and a C-C bond in a single step. This protocol is highly atom economical, has an excellent substrate scope, and exhibits the ability for gram-scale reaction.
December 2, 2021: Organic Letters
https://read.qxmd.com/read/34671089/genome-wide-association-study-of-colorectal-polyps-identified-highly-overlapping-polygenic-architecture-with-colorectal-cancer
#33
JOURNAL ARTICLE
Keiko Hikino, Masaru Koido, Nao Otomo, Kohei Tomizuka, Shiro Ikegawa, Koichi Matsuda, Yukihide Momozawa, Taisei Mushiroda, Chikashi Terao
No genome-wide association studies (GWAS) were reported for colorectal polyps and the overlap in polygenic backgrounds conferring risk of colorectal cancer and polyps remains unclear. We performed GWAS on subjects with colorectal polyps using the BioBank Japan data with 4447 cases and 157,226 controls. We evaluated genetic correlations between colorectal polyps and cancer, and effects on colorectal polyps of single nucleotide polymorphisms (SNPs) known to be associated with colorectal cancer. We identified CUX2, a known genetic locus to colorectal cancer, as a susceptibility locus to colorectal polyps (p value = 1...
March 2022: Journal of Human Genetics
https://read.qxmd.com/read/34447459/integration-of-multiple-omics-data-to-analyze-the-population-specific-differences-for-coronary-artery-disease
#34
COMPARATIVE STUDY
Yang Hu, Shizheng Qiu, Liang Cheng
Significant differences may exist among different descents, but the current studies are mainly based on European populations. In the present study, we analyzed the population-specific differences of coronary artery disease (CAD) between European and East Asian descents. In stage 1, we identified CAD susceptibility genes by gene-based tests in European and East Asian populations. We identified two novel susceptibility genes for CAD, namely, CUX2 and OAS3 . In stage 2, we carried out meta-analyses for the population-specific variants...
2021: Computational and Mathematical Methods in Medicine
https://read.qxmd.com/read/34315401/determination-of-genetic-effects-and-functional-snps-of-bovine-htr1b-gene-on-milk-fatty-acid-traits
#35
JOURNAL ARTICLE
Mingyue Cao, Lijun Shi, Peng Peng, Bo Han, Lin Liu, Xiaoqing Lv, Zhu Ma, Shengli Zhang, Dongxiao Sun
BACKGROUND: Our previous genome-wide association study (GWAS) on milk fatty acid traits in Chinese Holstein cows revealed, the SNP, BTB-01556197, was significantly associated with C10:0 at genome-wide level (P = 0.0239). It was located in the down-stream of 5-hydroxytryptamine receptor 1B (HTR1B) gene that has been shown to play an important role in the regulation of fatty acid oxidation. Hence, we considered it as a promising candidate gene for milk fatty acids in dairy cattle. In this study, we aimed to investigate whether the HTR1B gene had significant genetic effects on milk fatty acid traits...
July 27, 2021: BMC Genomics
https://read.qxmd.com/read/34282920/highly-luminescent-zero-dimensional-organic-copper-halides-for-x-ray-scintillation
#36
JOURNAL ARTICLE
Linyuan Lian, Xi Wang, Peng Zhang, Jinsong Zhu, Xiuwen Zhang, Jianbo Gao, Song Wang, Guijie Liang, Daoli Zhang, Liang Gao, Haisheng Song, Rong Chen, Xinzheng Lan, Wenxi Liang, Guangda Niu, Jiang Tang, Jianbing Zhang
The present work reports highly efficient flexible and reabsorption-free scintillators based on two zero-dimensional (0D) organic copper halides (TBA)CuX2 (TBA = tetrabutylammonium cation; X = Cl, Br). The (TBA)CuX2 exhibit highly luminescent green and sky-blue emissions peaked at 510 and 498 nm, with large Stokes shifts of 224 and 209 nm and high photoluminescence quantum yields (PLQYs) of 92.8% and 80.5% at room temperature for (TBA)CuCl2 and (TBA)CuBr2 single crystals (SCs), respectively. Interestingly, above room temperature, their PLQYs increase with temperature and reach near unity at 320 and 345 K for (TBA)CuCl2 and (TBA)CuBr2 , respectively...
July 20, 2021: Journal of Physical Chemistry Letters
https://read.qxmd.com/read/34276760/bioinformatics-based-identification-of-tumor-microenvironment-related-prognostic-genes-in-pancreatic-cancer
#37
JOURNAL ARTICLE
Shaojie Chen, Feifei Huang, Shangxiang Chen, Yinting Chen, Jiajia Li, Yaqing Li, Guoda Lian, Kaihong Huang
OBJECTIVE: Growing evidence has highlighted that the immune and stromal cells that infiltrate in pancreatic cancer microenvironment significantly influence tumor progression. However, reliable microenvironment-related prognostic gene signatures are yet to be established. The present study aimed to elucidate tumor microenvironment-related prognostic genes in pancreatic cancer. METHODS: We applied the ESTIMATE algorithm to categorize patients with pancreatic cancer from TCGA dataset into high and low immune/stromal score groups and determined their differentially expressed genes...
2021: Frontiers in Genetics
https://read.qxmd.com/read/34204789/-plek2-rrm2-gcsh-a-novel-wwox-dependent-biomarker-triad-of-glioblastoma-at-the-crossroads-of-cytoskeleton-reorganization-and-metabolism-alterations
#38
JOURNAL ARTICLE
Żaneta Kałuzińska, Damian Kołat, Andrzej K Bednarek, Elżbieta Płuciennik
Glioblastoma is one of the deadliest human cancers. Its malignancy depends on cytoskeleton reorganization, which is related to, e.g., epithelial-to-mesenchymal transition and metastasis. The malignant phenotype of glioblastoma is also affected by the WWOX gene, which is lost in nearly a quarter of gliomas. Although the role of WWOX in the cytoskeleton rearrangement has been found in neural progenitor cells, its function as a modulator of cytoskeleton in gliomas was not investigated. Therefore, this study aimed to investigate the role of WWOX and its collaborators in cytoskeleton dynamics of glioblastoma...
June 12, 2021: Cancers
https://read.qxmd.com/read/34204734/cut-domain-proteins-in-dna-repair-and-cancer
#39
REVIEW
Zubaidah M Ramdzan, Elise Vickridge, Camila C F Faraco, Alain Nepveu
Recent studies revealed that CUT domains function as accessory factors that accelerate DNA repair by stimulating the enzymatic activities of the base excision repair enzymes OGG1, APE1, and DNA pol β. Strikingly, the role of CUT domain proteins in DNA repair is exploited by cancer cells to facilitate their survival. Cancer cells in which the RAS pathway is activated produce an excess of reactive oxygen species (ROS) which, if not counterbalanced by increased production of antioxidants, causes sustained oxidative DNA damage and, ultimately, cell senescence...
June 12, 2021: Cancers
https://read.qxmd.com/read/34133916/transient-developmental-imbalance-of-cortical-interneuron-subtypes-presages-long-term-changes-in-behavior
#40
JOURNAL ARTICLE
Lorenza Magno, Zeinab Asgarian, Valentina Pendolino, Theodora Velona, Albert Mackintosh, Flora Lee, Agata Stryjewska, Celine Zimmer, François Guillemot, Mark Farrant, Beverley Clark, Nicoletta Kessaris
Cortical GABAergic interneurons are generated in large numbers in the ganglionic eminences and migrate into the cerebral cortex during embryogenesis. At early postnatal stages, during neuronal circuit maturation, autonomous and activity-dependent mechanisms operate within the cortex to adjust cell numbers by eliminating naturally occurring neuron excess. Here, we show that when cortical interneurons are generated in aberrantly high numbers-due to a defect in precursor cell proliferation during embryogenesis-extra parvalbumin interneurons persist in the postnatal mouse cortex during critical periods of cortical network maturation...
June 15, 2021: Cell Reports
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