keyword
https://read.qxmd.com/read/38619700/from-leaf-to-multiscale-models-of-photosynthesis-applications-and-challenges-for-crop-improvement
#1
REVIEW
Alexandrina Stirbet, Ya Guo, Dušan Lazár, Govindjee Govindjee
To keep up with the growth of human population and to circumvent deleterious effects of global climate change, it is essential to enhance crop yield to achieve higher production. Here we review mathematical models of oxygenic photosynthesis that are extensively used, and discuss in depth a subset that accounts for diverse approaches providing solutions to our objective. These include models (1) to study different ways to enhance photosynthesis, such as fine-tuning antenna size, photoprotection and electron transport; (2) to bioengineer carbon metabolism; and (3) to evaluate the interactions between the process of photosynthesis and the seasonal crop dynamics, or those that have included statistical whole-genome prediction methods to quantify the impact of photosynthesis traits on the improvement of crop yield...
April 15, 2024: Photosynthesis Research
https://read.qxmd.com/read/38611483/diversity-of-the-maize-root-endosphere-and-rhizosphere-microbiomes-modulated-by-the-inoculation-with-pseudomonas-fluorescens-um270-in-a-milpa-system
#2
JOURNAL ARTICLE
Blanca Rojas-Sánchez, Hugo Castelán-Sánchez, Esmeralda Y Garfias-Zamora, Gustavo Santoyo
Milpa is an agroecological production system based on the polyculture of plant species, with corn featuring as a central component. Traditionally, the milpa system does not require the application of chemicals, and so pest attacks and poor growth in poor soils can have adverse effects on its production. Therefore, the application of bioinoculants could be a strategy for improving crop growth and health; however, the effect of external inoculant agents on the endemic microbiota associated with corn has not been extensively studied...
March 26, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38599397/root-proliferation-adaptation-strategy-improved-maize-productivity-in-the-us-great-plains-insights-from-crop-simulation-model-under-future-climate-change
#3
JOURNAL ARTICLE
Ikenna Onyekwelu, Vaishali Sharda
Adaptation measures are essential for reducing the impact of future climate risks on agricultural production systems. The present study focuses on implementing an adaptation strategy to mitigate the impact of future climate change on rainfed maize production in the Eastern Kansas River Basin (EKSRB), an important rainfed maize-producing region in the US Great Plains, which faces potential challenges of future climate risks due to a significant east-to-west aridity gradient. We used a calibrated CERES-Maize crop model to evaluate the impacts of baseline climate conditions (1985-2014), late-term future climate scenarios (under the SSP245 emission pathway and CMIP6 models), and a novel root proliferation adaptation strategy on regional maize yield and rainfall productivity...
April 8, 2024: Science of the Total Environment
https://read.qxmd.com/read/38583106/evaluation-of-cru-jra-gridded-meteorological-dataset-for-modeling-of-wheat-production-systems-in-iran
#4
JOURNAL ARTICLE
Alireza Araghi, Christopher J Martinez
Meteorological variables are essential inputs for agricultural simulation models and the lack of measured data is a big challenge for the application of these models in many agricultural zones. Studies indicated that gridded meteorological datasets can be proper replacements for measured data. This paper aimed to examine a new gridded meteorological dataset namely CRU-JRA for crop modeling intents. The CRU-JRA is a 6-hourly dataset with a spatial resolution of 0.5° × 0.5° that was primarily constructed for modeling purposes...
April 7, 2024: International Journal of Biometeorology
https://read.qxmd.com/read/38544806/editorial-enriching-genomic-breeding-with-environmental-covariates-crop-models-and-high-throughput-phenotyping
#5
EDITORIAL
Alencar Xavier, Katy M Rainey, Kelly R Robbins
No abstract text is available yet for this article.
2024: Frontiers in Genetics
https://read.qxmd.com/read/38416832/mitigating-nitrogen-losses-with-almost-no-crop-yield-penalty-during-extremely-wet-years
#6
JOURNAL ARTICLE
Wenfeng Liu, Mengxue Li, Yuanyuan Huang, David Makowski, Yang Su, Yawei Bai, Bernhard Schauberger, Taisheng Du, Karim C Abbaspour, Kun Yang, Hong Yang, Philippe Ciais
Climate change-induced precipitation anomalies during extremely wet years (EWYs) result in substantial nitrogen losses to aquatic ecosystems (Nw ). Still, the extent and drivers of these losses, and effective mitigation strategies have remained unclear. By integrating global datasets with well-established crop modeling and machine learning techniques, we reveal notable increases in Nw , ranging from 22 to 56%, during historical EWYs. These pulses are projected to amplify under the SSP126 (SSP370) scenario to 29 to 80% (61 to 120%) due to the projected increases in EWYs and higher nitrogen input...
March 2024: Science Advances
https://read.qxmd.com/read/38410726/combining-machine-learning-and-remote-sensing-integrated-crop-modeling-for-rice-and-soybean-crop-simulation
#7
JOURNAL ARTICLE
Jonghan Ko, Taehwan Shin, Jiwoo Kang, Jaekyeong Baek, Wan-Gyu Sang
Machine learning (ML) techniques offer a promising avenue for improving the integration of remote sensing data into mathematical crop models, thereby enhancing crop growth prediction accuracy. A critical variable for this integration is the leaf area index (LAI), which can be accurately assessed using proximal or remote sensing data based on plant canopies. This study aimed to (1) develop a machine learning-based method for estimating the LAI in rice and soybean crops using proximal sensing data and (2) evaluate the performance of a Remote Sensing-Integrated Crop Model (RSCM) when integrated with the ML algorithms...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38408836/benefit-of-aerosol-reduction-to-winter-wheat-during-china-s-clean-air-action-a-case-study-of-henan-province
#8
JOURNAL ARTICLE
Yang Bai, Pengfei Zhao, Xueyang Chen, Lijun Wang, Wenjuan Chang, Jianzhong Guo, Jiayao Wang
A strongly declining aerosol radiative effect has been observed in China since 2013 after implementing the clean air action, yet its impact on wheat (Triticum aestivum L.) production remains unclear. We use satellite measures and a biophysical crop model to assess the impact of aerosol-induced radiative perturbations on winter wheat production in the agricultural belt of Henan province from 2013 to 2018. After calibrating parameters with the extended Fourier Amplitude Sensitivity Test (EFAST) and the generalized likelihood uncertainty estimation (GLUE) method, the DSSAT CERES-Wheat model was able to simulate crop biomass and yield more accurately...
July 2024: Journal of Environmental Sciences (China)
https://read.qxmd.com/read/38355745/water-footprints-and-crop-water-use-of-175-individual-crops-for-1990-2019-simulated-with-a-global-crop-model
#9
JOURNAL ARTICLE
Oleksandr Mialyk, Joep F Schyns, Martijn J Booij, Han Su, Rick J Hogeboom, Markus Berger
The water footprint of a crop (WF) is a common metric for assessing agricultural water consumption and productivity. To provide an update and methodological enhancement of existing WF datasets, we apply a global process-based crop model to quantify consumptive WFs of 175 individual crops at a 5 arcminute resolution over the 1990-2019 period. This model simulates the daily crop growth and vertical water balance considering local environmental conditions, crop characteristics, and farm management. We partition WFs into green (water from precipitation) and blue (from irrigation or capillary rise), and differentiate between rainfed and irrigated production systems...
February 14, 2024: Scientific Data
https://read.qxmd.com/read/38325280/impact-of-calibrating-a-low-cost-capacitance-based-soil-moisture-sensor-on-aquacrop-model-performance
#10
JOURNAL ARTICLE
Soham Adla, Felix Bruckmaier, Leonardo F Arias-Rodriguez, Shivam Tripathi, Saket Pande, Markus Disse
Sensor data and agro-hydrological modeling have been combined to improve irrigation management. Crop water models simulating crop growth and production in response to the soil-water environment need to be parsimonious in terms of structure, inputs and parameters to be applied in data scarce regions. Irrigation management using soil moisture sensors requires them to be site-calibrated, low-cost, and maintainable. Therefore, there is a need for parsimonious crop modeling combined with low-cost soil moisture sensing without losing predictive capability...
February 6, 2024: Journal of Environmental Management
https://read.qxmd.com/read/38294329/glutaredoxin-regulation-of-primary-root-growth-is-associated-with-early-drought-stress-tolerance-in-pearl-millet
#11
JOURNAL ARTICLE
Carla de la Fuente, Alexandre Grondin, Bassirou Sine, Marilyne Debieu, Christophe Belin, Amir Hajjarpoor, Jonathan A Atkinson, Sixtine Passot, Marine Salson, Julie Orjuela, Christine Tranchant-Dubreuil, Jean-Rémy Brossier, Maxime Steffen, Charlotte Morgado, Hang Ngan Dinh, Bipin K Pandey, Julie Darmau, Antony Champion, Anne-Sophie Petitot, Celia Barrachina, Marine Pratlong, Thibault Mounier, Princia Nakombo-Gbassault, Pascal Gantet, Prakash Gangashetty, Yann Guedon, Vincent Vadez, Jean-Philippe Reichheld, Malcolm J Bennett, Ndjido Ardo Kane, Soazig Guyomarc'h, Darren M Wells, Yves Vigouroux, Laurent Laplaze
Seedling root traits impact plant establishment under challenging environments. Pearl millet is one of the most heat and drought tolerant cereal crops that provides a vital food source across the sub-Saharan Sahel region. Pearl millet's early root system features a single fast-growing primary root which we hypothesize is an adaptation to the Sahelian climate. Using crop modeling, we demonstrate that early drought stress is an important constraint in agrosystems in the Sahel where pearl millet was domesticated...
January 31, 2024: ELife
https://read.qxmd.com/read/38278227/climate-change-enhances-stability-of-wheat-flowering-date
#12
JOURNAL ARTICLE
Yong He, Wei Xiong, Pengcheng Hu, Daiqing Huang, J Allan Feurtado, Tianyi Zhang, Chenyang Hao, Ron DePauw, Bangyou Zheng, Gerrit Hoogenboom, Laura E Dixon, Hong Wang, Andrew Juan Challinor
The stability of winter wheat-flowering-date is crucial for ensuring consistent and robust crop performance across diverse climatic conditions. However, the impact of climate change on wheat-flowering-dates remains uncertain. This study aims to elucidate the influence of climate change on wheat-flowering-dates, predict how projected future climate conditions will affect flowering date stability, and identify the most stable wheat genotypes in the study region. We applied a multi-locus genotype-based (MLG-based) model for simulating wheat-flowering-dates, which we calibrated and evaluated using observed data from the Northern China winter wheat region (NCWWR)...
January 24, 2024: Science of the Total Environment
https://read.qxmd.com/read/38256815/global-sensitivity-analysis-of-the-advanced-oryza-n-model-with-different-rice-types-and-irrigation-regimes
#13
JOURNAL ARTICLE
Ya Gao, Chen Sun, Tiago B Ramos, Junwei Tan, Ana R Oliveira, Quanzhong Huang, Guanhua Huang, Xu Xu
Identifying important parameters in crop models is critical for model application. This study conducted a sensitivity analysis of 23 selected parameters of the advanced rice model ORYZA-N using the Extended FAST method. The sensitivity analysis was applied for three rice types (single-season rice in cold regions and double-season rice (early rice and late rice) in subtropical regions) and two irrigation regimes (traditional flood irrigation (TFI) and shallow-wet irrigation (SWI)). This study analyzed the parameter sensitivity of six crop growth outputs at four developmental stages and yields...
January 17, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38166332/a-deep-learning-pipeline-for-assessing-ventricular-volumes-from-a-cardiac-mri-registry-of-patients-with-single-ventricle-physiology
#14
MULTICENTER STUDY
Tina Yao, Nicole St Clair, Gabriel F Miller, Adam L Dorfman, Mark A Fogel, Sunil Ghelani, Rajesh Krishnamurthy, Christopher Z Lam, Michael Quail, Joshua D Robinson, David Schidlow, Timothy C Slesnick, Justin Weigand, Jennifer A Steeden, Rahul H Rathod, Vivek Muthurangu
Purpose To develop an end-to-end deep learning (DL) pipeline for automated ventricular segmentation of cardiac MRI data from a multicenter registry of patients with Fontan circulation (Fontan Outcomes Registry Using CMR Examinations [FORCE]). Materials and Methods This retrospective study used 250 cardiac MRI examinations (November 2007-December 2022) from 13 institutions for training, validation, and testing. The pipeline contained three DL models: a classifier to identify short-axis cine stacks and two U-Net 3+ models for image cropping and segmentation...
January 2024: Radiology. Artificial intelligence
https://read.qxmd.com/read/38146054/a-framework-for-assessing-the-impacts-of-land-use-cover-change-and-climate-change-on-wheat-productivity-under-1-5%C3%A2-c-and-2-0%C3%A2-c-warming-at-watershed-scale
#15
JOURNAL ARTICLE
Haowei Sun, Li Wang
BACKGROUND: Irrigation is used extensively to enhance grain production and ensure food security. Many studies have used crop models and global climate models to study the variation of irrigated crop yield in the context of climate change. But most considered the influence of direct climate change but neglected the influence of irrigation water availability, which is affected by land-use/cover change (LUCC) and indirect climate change, on irrigated crop yield. This study therefore developed a framework including Patch-generating Land Use Simulation model, Soil and Water Assessment Tool, Agricultural Production Systems sImulator Model, and global climate models for exploring the impacts of LUCC, direct climate change, and indirect climate change on wheat yield in a typical watershed...
December 25, 2023: Journal of the Science of Food and Agriculture
https://read.qxmd.com/read/38134290/high-throughput-field-phenotyping-reveals-that-selection-in-breeding-has-affected-the-phenology-and-temperature-response-of-wheat-in-the-stem-elongation-phase
#16
JOURNAL ARTICLE
Lukas Roth, Lukas Kronenberg, Helge Aasen, Achim Walter, Jens Hartung, Fred van Eeuwijk, Hans-Peter Piepho, Andreas Hund
Crop growth and phenology are driven by seasonal changes in environmental variables, with temperature as one important factor. However, knowledge about genotype-specific temperature response and its influence on phenology is limited. Such information is elementary to improve crop models and adapt selection strategies. We measured the height development of 352 European winter wheat varieties in four years to quantify phenology, and fitted an asymptotic temperature response model. The model used hourly fluctuations in temperature to parameterize the base temperature (Tmin), the temperature optimum (rmax), and the steepness (lrc) of growth responses...
December 22, 2023: Journal of Experimental Botany
https://read.qxmd.com/read/38097082/taking-the-spatio-temporal-effects-of-climate-change-into-account-for-life-cycle-assessment-of-prospective-scenarios-to-secure-water-supplies-in-agricultural-areas
#17
JOURNAL ARTICLE
Nicolas Rogy, Amandine Pastor, Agata Sferratore, Nicolas Géhéniau, Arnaud Hélias, Eléonore Loiseau
To cope with climate change, agricultural territories are forced to implement adaptation strategies, including the implementation of irrigation infrastructures. These strategies are deployed over a long term, and their environmental performance may vary in time and space due to climate change. Environmental assessment methods that include spatio-temporal dynamics must be developed to identify long term "no-regret" scenarios. This study proposes an innovative approach based on the coupling between a crop model, i...
December 12, 2023: Science of the Total Environment
https://read.qxmd.com/read/38089792/predicting-tomato-water-consumption-in-a-hydroponic-greenhouse-contribution-of-light-interception-models
#18
JOURNAL ARTICLE
Konstantinos Florakis, Samis Trevezas, Véronique Letort
In recent years, hydroponic greenhouse cultivation has gained increasing popularity: the combination of hydroponics' highly efficient use of resources with a controlled environment and an extended growing season provided by greenhouses allows for optimized, year-round plant growth. In this direction, precise and effective irrigation management is critical for achieving optimal crop yield while ensuring an economical use of water resources. This study explores techniques for explaining and predicting daily water consumption by utilizing only easily readily available meteorological data and the progressively growing records of the water consumption dataset...
2023: Frontiers in Plant Science
https://read.qxmd.com/read/38089790/is-olive-crop-modelling-ready-to-assess-the-impacts-of-global-change
#19
REVIEW
Francisco J Villalobos, Álvaro López-Bernal, Omar García-Tejera, Luca Testi
Olive trees, alongside grapevines, dominate the Mediterranean tree crop landscape. However, as climate change intensifies, the Mediterranean region, which encompasses 95% of the global olive cultivation area, faces significant challenges. Rising carbon dioxide (CO2 ) levels, increasing temperatures, and declining precipitation pose substantial threats to olive tree performance. Photosynthesis, respiration, phenology, water use and ultimately yield are possibly the main factors affected. To address this future scenario, it is crucial to develop adaptation and mitigation strategies...
2023: Frontiers in Plant Science
https://read.qxmd.com/read/38068590/monitoring-and-mapping-winter-wheat-spring-frost-damage-with-modis-data-and-statistical-data
#20
JOURNAL ARTICLE
Di Chen, Buchun Liu, Tianjie Lei, Xiaojuan Yang, Yuan Liu, Wei Bai, Rui Han, Huiqing Bai, Naijie Chang
Spring frost is an extreme temperature event that poses a significant threat to winter wheat production and consequently jeopardizes food security. In the context of climate change, the accelerated phenology of winter wheat due to global warming advances the frost-sensitive stage, thereby escalating the risk of spring frost damage. Present techniques for monitoring and assessing frost damage heavily rely on meteorological data, controlled field experiments and crop model simulations, which cannot accurately depict the actual disaster situation for winter wheat...
November 24, 2023: Plants (Basel, Switzerland)
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