keyword
MENU ▼
Read by QxMD icon Read
search

nutrients dynamic

keyword
https://www.readbyqxmd.com/read/28214118/optimizing-peri-urban-ecosystems-pure-to-re-couple-urban-rural-symbiosis
#1
REVIEW
Yong-Guan Zhu, Brian J Reid, Andrew A Meharg, Steve A Banwart, Bo-Jie Fu
Globally, rapid urbanization, along with economic development, is dramatically changing the balance of biogeochemical cycles, impacting upon ecosystem services and impinging on United Nation global sustainability goals (inter alia: sustainable cities and communities; responsible consumption and production; good health and well-being; clean water and sanitation, and; to protect and conserve life on land and below water). A key feature of the urban ecosystems is that nutrient stocks, carbon (C), nitrogen (N) and phosphorus (P), are being enriched...
February 14, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28212786/interplay-between-microbial-trait-dynamics-and-population-dynamics-revealed-by-the-combination-of-laboratory-experiment-and-computational-approaches
#2
Kenta Suzuki, Yuji Yamauchi, Takehito Yoshida
Filament formation is a common bacterial defense mechanism and possibly has a broad impact on microbial community dynamics. In order to examine the impact of filament formation on population dynamics, we developed an experimental system with a filamentous bacterium Flectobacillus sp. MWH38 and a ciliate predator Tetrahymena pyriformis. In this system, the effective defense of Flectobacillus resulted in the extinction of Tetrahymena by allowing almost no population growth. The result of a kairomone experiment suggested the existence of chemical signals for filament formation...
February 14, 2017: Journal of Theoretical Biology
https://www.readbyqxmd.com/read/28211907/identification-of-extracellular-segments-by-mass-spectrometry-improves-topology-prediction-of-transmembrane-proteins
#3
Tamás Langó, Gergely Róna, Éva Hunyadi-Gulyás, Lilla Turiák, Julia Varga, László Dobson, György Várady, László Drahos, Beáta G Vértessy, Katalin F Medzihradszky, Gergely Szakács, Gábor E Tusnády
Transmembrane proteins play crucial role in signaling, ion transport, nutrient uptake, as well as in maintaining the dynamic equilibrium between the internal and external environment of cells. Despite their important biological functions and abundance, less than 2% of all determined structures are transmembrane proteins. Given the persisting technical difficulties associated with high resolution structure determination of transmembrane proteins, additional methods, including computational and experimental techniques remain vital in promoting our understanding of their topologies, 3D structures, functions and interactions...
February 13, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28203243/foliar-nutrition-biostimulants-and-prime-like-dynamics-in-fruit-tree-physiology-new-insights-on-an-old-topic
#4
REVIEW
Georgia Tanou, Vasileios Ziogas, Athanassios Molassiotis
Despite the fact that the usage of foliar nutrients has long history, many aspects of fertilization through leaves are still unknown. Herein, we review the current knowledge regarding the canopy fertilization putting special emphasis on Fe nutrition and briefly provide insights into the nanofertilizer technology of the foliar feeding of fruit crops. In addition, this paper discusses the main aspects of the foliar application of biostimulants regarding crucial factors of fruit cropping systems, such as fruit yield/size, tolerance to environmental stresses, and nutrient availability...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28196137/effects-of-dietary-nutrient-levels-on-microbial-community-composition-and-diversity-in-the-ileal-contents-of-pregnant-huanjiang-mini-pigs
#5
Yujiao Ji, Xiangfeng Kong, Huawei Li, Qian Zhu, Qiuping Guo, Yulong Yin
The mammalian gut microbiota influences various metabolic and physiological processes. Substantial metabolic changes occur during a healthy pregnancy that may be related to microbiota composition dynamics. However, the effect of diet on intestinal microbiota composition and diversity during pregnancy remains unclear. We examined the ileal contents of Huanjiang mini-pigs at two pregnancy stages to determine the effects of dietary nutrient levels on such microbial communities. Animals received either a higher-nutrient (HN) diet formulated to meet US National Research Council requirements or a lower-nutrient (LN) diet that met the Chinese National Feeding Standard recommendations...
2017: PloS One
https://www.readbyqxmd.com/read/28193145/constrained-cage-culture-improves-engineered-cartilage-functional-properties-by-enhancing-collagen-network-stability
#6
Robert J Nims, Alexander D Cigan, Krista M Durney, Brian K Jones, John D O'Neill, Wing-Sum A Law, Gordana Vunjak-Novakovic, Clark Tung-Hui Hung, Gerard A Ateshian
When cultured with sufficient nutrient supply, engineered cartilage synthesizes proteoglycans rapidly, producing an osmotic swelling pressure that destabilizes immature collagen and prevents the development of a robust collagen framework, a hallmark of native cartilage. We hypothesized that mechanically constraining the proteoglycan-induced tissue swelling would enhance construct functional properties through the development of a more stable collagen framework. To test this hypothesis, we developed a novel "cage" growth system to mechanically prevent tissue constructs from swelling while ensuring adequate nutrient supply to the growing construct...
February 14, 2017: Tissue Engineering. Part A
https://www.readbyqxmd.com/read/28188211/cluh-regulates-mitochondrial-metabolism-by-controlling-translation-and-decay-of-target-mrnas
#7
Désirée Schatton, David Pla-Martin, Marie-Charlotte Marx, Henriette Hansen, Arnaud Mourier, Ivan Nemazanyy, Alberto Pessia, Peter Zentis, Teresa Corona, Vangelis Kondylis, Esther Barth, Astrid C Schauss, Vidya Velagapudi, Elena I Rugarli
Mitochondria are essential organelles that host crucial metabolic pathways and produce adenosine triphosphate. The mitochondrial proteome is heterogeneous among tissues and can dynamically change in response to different metabolic conditions. Although the transcriptional programs that govern mitochondrial biogenesis and respiratory function are well known, posttranscriptional regulatory mechanisms remain unclear. In this study, we show that the cytosolic RNA-binding protein clustered mitochondria homologue (CLUH) regulates the expression of a mitochondrial protein network supporting key metabolic programs required under nutrient deprivation...
February 10, 2017: Journal of Cell Biology
https://www.readbyqxmd.com/read/28188205/metagenomic-and-metatranscriptomic-analyses-reveal-structure-and-dynamics-of-a-dechlorinating-community-containing-dehalococcoides-mccartyi-and-corrinoid-providing-microorganisms-under-cobalamin-limited-condition
#8
Yujie Men, Ke Yu, Jacob Bælum, Ying Gao, Julien Tremblay, Emmanuel Prestat, Ben Stenuit, Susannah G Tringe, Janet Jansson, Tong Zhang, Lisa Alvarez-Cohen
The aim of this study is to obtain a systems level understanding of the interactions between Dehalococcoides and corrinoid-supplying microorganisms by analyzing community structures and functional compositions, activities and dynamics in trichloroethene (TCE) - dechlorinating enrichments. Metagenomes and metatranscriptomes of the dechlorinating enrichments with and without exogenous cobalamin were compared. Seven putative draft genomes were binned from the metagenomes. At an early stage (2 d), more transcripts of genes in the Veillonellaceae bin-genome were detected in the metatranscriptome of the enrichment with exogenous cobalamin compared to the one without cobalamin addition...
February 10, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28183172/dynamic-changes-of-yak-bos-grunniens-gut-microbiota-during-growth-revealed-by-pcr-dgge-and-metagenomics
#9
Yuanyang Nie, Zhiwei Zhou, Jiuqiang Guan, Baixue Xia, Xiaolin Luo, Yang Yang, Yu Fu, Qun Sun
Objective: To understand the dynamic structure, function, and influence on nutrient metabolism in hosts, it was crucial to assess the genetic potential of gut microbial community in yaks of different ages. Method: The denaturing gradient gel electrophoresis (DGGE) profiles and Illumina-based metagenomic sequencing on colon content of 15 semi-domestic yaks were investigated. Unweighted pairwise grouping method with mathematical averages (UPGMA) clustering and principal component analysis (PCA) were used to analize the DGGE fingerprint...
January 26, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28182638/effect-of-elevated-atmospheric-co2-concentration-on-growth-and-leaf-litter-decomposition-of-quercus-acutissima-and-fraxinus-rhynchophylla
#10
Sangsub Cha, Hee-Myung Chae, Sang-Hoon Lee, Jae-Kuk Shim
The atmospheric carbon dioxide (CO2) level is expected to increase substantially, which may change the global climate and carbon dynamics in ecosystems. We examined the effects of an elevated atmospheric CO2 level on the growth of Quercus acutissima and Fraxinus rhynchophylla seedlings. We investigated changes in the chemical composition of leaf litter, as well as litter decomposition. Q. acutissima and F. rhynchophylla did not show differences in dry weight between ambient CO2 and enriched CO2 treatments, but they exhibited different patterns of carbon allocation, namely, lower shoot/root ratio (S/R) and decreased specific leaf area (SLA) under CO2-enriched conditions...
2017: PloS One
https://www.readbyqxmd.com/read/28182014/starvation-at-birth-impairs-germ-cell-cyst-breakdown-and-increases-autophagy-and-apoptosis-in-mouse-oocytes
#11
Yong-Yong Wang, Yuan-Chao Sun, Xiao-Feng Sun, Shun-Feng Cheng, Bo Li, Xi-Feng Zhang, Massimo De Felici, Wei Shen
The female reproductive lifespan is largely determined by the size of primordial follicle pool, which is established following germ cell cyst breakdown around birth. Almost two-third of oocytes are lost during germ cell cysts breakdown, following autophagic and apoptosis mechanisms. To investigate a possible relationship between germ cell cyst breakdown and nutrition supply, we established a starvation model in mouse pups at birth and evaluated the dynamics of cyst breakdown during nutrient deprivation. Our results showed that after 36 h of starvation between 1...
February 9, 2017: Cell Death & Disease
https://www.readbyqxmd.com/read/28181244/plant-functional-traits-and-canopy-structure-control-the-relationship-between-photosynthetic-co2-uptake-and-far-red-sun-induced-fluorescence-in-a-mediterranean-grassland-under-different-nutrient-availability
#12
Mirco Migliavacca, Oscar Perez-Priego, Micol Rossini, Tarek S El-Madany, Gerardo Moreno, Christiaan van der Tol, Uwe Rascher, Anna Berninger, Verena Bessenbacher, Andreas Burkart, Arnaud Carrara, Francesco Fava, Jin-Hong Guan, Tiana W Hammer, Kathrin Henkel, Enrique Juarez-Alcalde, Tommaso Julitta, Olaf Kolle, M Pilar Martín, Talie Musavi, Javier Pacheco-Labrador, Andrea Pérez-Burgueño, Thomas Wutzler, Sönke Zaehle, Markus Reichstein
Sun-induced fluorescence (SIF) in the far-red region provides a new noninvasive measurement approach that has the potential to quantify dynamic changes in light-use efficiency and gross primary production (GPP). However, the mechanistic link between GPP and SIF is not completely understood. We analyzed the structural and functional factors controlling the emission of SIF at 760 nm (F760 ) in a Mediterranean grassland manipulated with nutrient addition of nitrogen (N), phosphorous (P) or nitrogen-phosphorous (NP)...
February 9, 2017: New Phytologist
https://www.readbyqxmd.com/read/28177216/bacterioferritin-structure-dynamics-and-protein-protein-interactions-at-play-in-iron-storage-and-mobilization
#13
Mario Rivera
Despite its essentiality to life, iron presents significant challenges to cells: the exceedingly low solubility of Fe(3+) limits its bioavailability, and the reactivity of Fe(2+) toward H2O2 is a source of the toxic hydroxyl radical (HO(•)). Consequently, cellular levels of free iron are highly regulated to ensure sufficiency while preventing iron-induced toxicity. Relatively little is known about the fate of iron in the bacterial cytosol or how cells balance the need for relatively high cytosolic iron concentrations with the potential toxicity of the nutrient...
February 8, 2017: Accounts of Chemical Research
https://www.readbyqxmd.com/read/28176768/soil-networks-become-more-connected-and-take-up-more-carbon-as-nature-restoration-progresses
#14
Elly Morriën, S Emilia Hannula, L Basten Snoek, Nico R Helmsing, Hans Zweers, Mattias de Hollander, Raquel Luján Soto, Marie-Lara Bouffaud, Marc Buée, Wim Dimmers, Henk Duyts, Stefan Geisen, Mariangela Girlanda, Rob I Griffiths, Helene-Bracht Jørgensen, John Jensen, Pierre Plassart, Dirk Redecker, Rűdiger M Schmelz, Olaf Schmidt, Bruce C Thomson, Emilie Tisserant, Stephane Uroz, Anne Winding, Mark J Bailey, Michael Bonkowski, Jack H Faber, Francis Martin, Philippe Lemanceau, Wietse de Boer, Johannes A van Veen, Wim H van der Putten
Soil organisms have an important role in aboveground community dynamics and ecosystem functioning in terrestrial ecosystems. However, most studies have considered soil biota as a black box or focussed on specific groups, whereas little is known about entire soil networks. Here we show that during the course of nature restoration on abandoned arable land a compositional shift in soil biota, preceded by tightening of the belowground networks, corresponds with enhanced efficiency of carbon uptake. In mid- and long-term abandoned field soil, carbon uptake by fungi increases without an increase in fungal biomass or shift in bacterial-to-fungal ratio...
February 8, 2017: Nature Communications
https://www.readbyqxmd.com/read/28174661/movement-patterns-of-a-keystone-waterbird-species-are-highly-predictable-from-landscape-configuration
#15
Erik Kleyheeg, Jacintha G B van Dijk, Despina Tsopoglou-Gkina, Tara Y Woud, Dieuwertje K Boonstra, Bart A Nolet, Merel B Soons
BACKGROUND: Movement behaviour is fundamental to the ecology of animals and their interactions with other organisms, and as such contributes to ecosystem dynamics. Waterfowl are key players in ecological processes in wetlands and surrounding habitats through predator-prey interactions and their transportation of nutrients and other organisms. Understanding the drivers of their movement behaviour is crucial to predict how environmental changes affect their role in ecosystem functioning...
2017: Movement Ecology
https://www.readbyqxmd.com/read/28166535/onset-of-the-aerobic-nitrogen-cycle-during-the-great-oxidation-event
#16
Aubrey L Zerkle, Simon W Poulton, Robert J Newton, Colin Mettam, Mark W Claire, Andrey Bekker, Christopher K Junium
The rise of oxygen on the early Earth (about 2.4 billion years ago) caused a reorganization of marine nutrient cycles, including that of nitrogen, which is important for controlling global primary productivity. However, current geochemical records lack the temporal resolution to address the nature and timing of the biogeochemical response to oxygenation directly. Here we couple records of ocean redox chemistry with nitrogen isotope ((15)N/(14)N) values from approximately 2.31-billion-year-old shales of the Rooihoogte and Timeball Hill formations in South Africa, deposited during the early stages of the first rise in atmospheric oxygen on the Earth (the Great Oxidation Event)...
February 6, 2017: Nature
https://www.readbyqxmd.com/read/28160641/contribution-of-glomalin-to-dissolve-organic-carbon-under-different-land-uses-and-seasonality-in-dry-tropics
#17
Ashutosh Kumar Singh, Apurva Rai, Vivek Pandey, Nandita Singh
Glomalin related soil protein (GRSP) is a hydrophobic glycoprotein that is significant for soil organic carbon (SOC) persistence and sequestration, owing to its large contribution to SOC pool and long turnover time. However, the contribution of GRSP to dissolve OC (DOC) leach from soil is not yet comprehensively explored, though it could have implication in understanding SOC dynamics. We, therefore, aim to measure the contribution of GRSP to DOC, in a range of land uses and climatic seasons in the dry tropical ecosystem...
February 1, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/28158278/a-substantial-fraction-of-phytoplankton-derived-don-is-resistant-to-degradation-by-a-metabolically-versatile-widely-distributed-marine-bacterium
#18
Luca Polimene, Darren Clark, Susan Kimmance, Paul McCormack
The capacity of bacteria for degrading dissolved organic nitrogen (DON) and remineralising ammonium is of importance for marine ecosystems, as nitrogen availability frequently limits productivity. Here, we assess the capacity of a widely distributed and metabolically versatile marine bacterium to degrade phytoplankton-derived dissolved organic carbon (DOC) and nitrogen. To achieve this, we lysed exponentially growing diatoms and used the derived dissolved organic matter (DOM) to support an axenic culture of Alteromonas sp...
2017: PloS One
https://www.readbyqxmd.com/read/28152228/transporters-as-information-processors-in-bacterial-signalling-pathways
#19
REVIEW
Hannah Piepenbreier, Georg Fritz, Susanne Gebhard
Transporters are essential players in bacterial growth and survival, since they are key for uptake of nutrients on the one hand, and for defence against endogenous and environmental stresses on the other hand. Remarkably, in addition to their primary role in substrate translocation, it has become clear that some transporters have acquired a secondary function as sensors and information processors in signalling pathways. In this review, we describe recent advances in our understanding of the role of transporters in such signalling cascades, and discuss some of the emergent dynamic behaviour found in hallmark examples...
February 2, 2017: Molecular Microbiology
https://www.readbyqxmd.com/read/28148984/temporal-variations-in-diazotrophic-communities-and-nifh-transcripts-level-across-the-agricultural-and-fallow-land-at-jaipur-rajasthan-india
#20
Sushma Sharma, Dileep K Singh
Biological nitrogen fixation is one of the most important nutrient processes in the ecosystem. Many studies have estimated the variations in soil diazotrophic communities across the globe. To understand the dynamics of nitrogen fixing bacterial communities and their response to the environmental changes, it is important to study the temporal variability of these communities. Using DNA fingerprinting method, denaturing gradient gel electrophoresis and real time polymerase chain reaction of the nifH gene, we have found that the agricultural land harbored unique nitrogen fixing communities that revealed different temporal patterns and abundance...
March 2017: Indian Journal of Microbiology
keyword
keyword
117742
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"