keyword
https://read.qxmd.com/read/38588275/transient-interdomain-interactions-in-free-usp14-shape-its-conformational-ensemble
#21
JOURNAL ARTICLE
Johannes Salomonsson, Björn Wallner, Linda Sjöstrand, Pádraig D'Arcy, Maria Sunnerhagen, Alexandra Ahlner
The deubiquitinase (DUB) ubiquitin-specific protease 14 (USP14) is a dual domain protein that plays a regulatory role in proteasomal degradation and has been identified as a promising therapeutic target. USP14 comprises a conserved USP domain and a ubiquitin-like (Ubl) domain separated by a 25-residue linker. The enzyme activity of USP14 is autoinhibited in solution, but is enhanced when bound to the proteasome, where the Ubl and USP domains of USP14 bind to the Rpn1 and Rpt1/Rpt2 units, respectively. No structure of full-length USP14 in the absence of proteasome has yet been presented, however, earlier work has described how transient interactions between Ubl and USP domains in USP4 and USP7 regulate DUB activity...
May 2024: Protein Science
https://read.qxmd.com/read/38585045/-nobody-shops-at-the-neighborhood-store-leveraging-a-community-s-pediatric-fresh-produce-prescription-program-to-inform-future-participating-store-redemption-locations
#22
JOURNAL ARTICLE
Richard C Sadler, Amy Saxe-Custack
Research examining the nature of food shopping often considers proximity to the nearest or overall distance travelled to multiple stores. Such studies make up a portion of new work on so-called 'food deserts' and the issues inherent in the term, including that most people do not shop at their nearest store, and mobility challenges vary vastly from one person to the next. Increasing the knowledge base on shopping characteristics could be useful for behavioral interventions and programs aimed at increasing healthy food shopping...
2024: Cities & health
https://read.qxmd.com/read/38584776/insights-on-the-dynamic-behavior-of-protein-disulfide-isomerase-in-the-solution-environment-through-the-saxs-technique
#23
JOURNAL ARTICLE
Chandrasekar Sanyasi, Susmida Seni Balakrishnan, Thirunavukkarasu Chinnasamy, Nagarajan Venugopalan, Palani Kandavelu, Renu Batra-Safferling, Suresh Kumar Muthuvel
UNLABELLED: The dynamic behavior of Protein Disulfide Isomerase (PDI) in an aqueous solution environment under physiologically active pH has been experimentally verified in this study using Small Angle X-ray Scattering (SAXS) technique. The structural mechanism of dimerization for full-length PDI molecules and co-complex with two renowned substrates has been comprehensively discussed. The structure models obtained from the SAXS data of PDI purified from bovine liver display behavior duality between unaccompanied-enzyme and after engaged with substrates...
2024: In Silico Pharmacology
https://read.qxmd.com/read/38584701/simple-scattering-lipid-nanoparticle-structural-data-repository
#24
JOURNAL ARTICLE
Lee Joon Kim, David Shin, Wellington C Leite, Hugh O'Neill, Oliver Ruebel, Andrew Tritt, Greg L Hura
Lipid nanoparticles (LNPs) are being intensively researched and developed to leverage their ability to safely and effectively deliver therapeutics. To achieve optimal therapeutic delivery, a comprehensive understanding of the relationship between formulation, structure, and efficacy is critical. However, the vast chemical space involved in the production of LNPs and the resulting structural complexity make the structure to function relationship challenging to assess and predict. New components and formulation procedures, which provide new opportunities for the use of LNPs, would be best identified and optimized using high-throughput characterization methods...
2024: Frontiers in Molecular Biosciences
https://read.qxmd.com/read/38579106/soft-materials-with-time-programmed-changes-in-physical-properties-through-lyotropic-phase-transitions-induced-by-ph-changing-reactions
#25
JOURNAL ARTICLE
Emma Bowley, Wanli Liu, Dave J Adams, Adam M Squires
We present the development of time-programmable functional soft materials. The materials undergo reversible phase transitions between lyotropic phases with different topologies and symmetries, which in turn have very different physical properties: viscosity, diffusion, and optical transparency. Here, this behavior is achieved by combining pH-responsive lyotropic phases made from the lipid monoolein doped with 10% oleic acid, with chemical reactions that have well-defined controllable kinetics: autocatalytic urea-urease and methyl formate hydrolysis, which increase and decrease pH, respectively...
April 5, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38577219/solvent-selective-gelation-of-cetyltrimethylammonium-bromide-structure-phase-evolution-and-thermal-characteristics
#26
JOURNAL ARTICLE
Chapireddy Nagarjuna, Illa Ramakanth
We report herein the gelation behaviour of cetyltrimethylammonium bromide (CTAB), a cationic surfactant, in a variety of solvent compositions. A turbid gel of CTAB in a binary solvent mixture at a critical composition was observed to be 1 : 3 v/v toluene : water. The molecular structure of the as-formed gel was investigated by X-ray diffraction and microscopic techniques, namely, optical and polarizing microscopy, scanning electron microscopy and small-angle X-ray scattering (SAXS)...
April 2024: Royal Society Open Science
https://read.qxmd.com/read/38575152/structural-features-of-the-porous-network-of-poly-urethane-aerogels-via-gas-permeability-measurements
#27
JOURNAL ARTICLE
Gerd-Sebastian Beyerlein, Lorenz Ratke
The permeability for gases through polyurethane (PUR) aerogels prepared from unsorted PUR scraps by means of a recycling technique is measured with a dynamic pressure method. The permeabilities are in the range of 10-15 to 10-13 m2 and thus reflect the pore morphology observed with scanning electron microscopy (SEM). The permeability depends on the envelope density and microstructural features of the aerogels and decreases with increasing inner surface area. The comparison of the permeability with the Porod constant, which is obtained independently via small angle X-ray scattering (SAXS), yields a high consistency with the expected theoretical relationship...
April 4, 2024: Macromolecular Rapid Communications
https://read.qxmd.com/read/38573315/counterion-effects-on-the-mesomorphic-and-electrochemical-properties-of-guanidinium-salts
#28
JOURNAL ARTICLE
Max Ebert, Alyna Lange, Michael Müller, Eugen Wuckert, Frank Gießelmann, Tillmann Klamroth, Anna Zens, Andreas Taubert, Sabine Laschat
Ionic liquid crystals (ILCs) combine the ion mobility of ionic liquids with the order and self-assembly of thermotropic mesophases. To understand the role of the anion in ILCs, wedge-shaped arylguanidinium salts with tetradecyloxy side chains were chosen as benchmark systems and their liquid crystalline self-assembly in the bulk phase as well as their electrochemical behavior in solution were studied depending on the anion. Differential scanning calorimetry (DSC), polarizing optical microscopy (POM) and X-ray diffraction (WAXS, SAXS) experiments revealed that for spherical anions, the phase width of the hexagonal columnar mesophase increased with the anion size, while for non-spherical anions, the trends were less clear cut...
April 4, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38556872/the-experience-of-traumatic-events-psychological-distress-and-social-support-links-to-covid-19-vaccine-hesitancy-and-trends-with-age-in-a-group-of-older-australians
#29
JOURNAL ARTICLE
Maria Christou-Ergos, Kerrie E Wiley, Julie Leask
BACKGROUND: Vaccination is important to reduce disease-associated morbidity and mortality in an ageing global population. While older adults are more likely than younger adults to accept vaccines, some remain hesitant. We sought to understand how traumatic events, psychological distress and social support contribute to older adults' intention to receive a COVID-19 vaccine and whether these experiences change with age. METHODS: We analysed survey data collected as part of the Sax Institute's 45 and Up Study in a population of Australian adults aged 60 years and over...
March 31, 2024: BMC Geriatrics
https://read.qxmd.com/read/38555949/revision-total-hip-arthroplasty-using-a-modular-fluted-tapered-revision-femoral-component-and-interlocking-screws-in-vancouver-b3-periprosthetic-fractures-with-insufficient-bone-at-the-isthmus
#30
JOURNAL ARTICLE
Bernd Fink, Arman Ahmadian, Florian H Sax, Philipp Schuster
AIMS: Revision total hip arthroplasty in patients with Vancouver type B3 fractures with Paprosky type IIIA, IIIB, and IV femoral defects are difficult to treat. One option for Paprovsky type IIIB and IV defects involves modular cementless, tapered, revision femoral components in conjunction with distal interlocking screws. The aim of this study was to analyze the rate of reoperations and complications and union of the fracture, subsidence of the stem, mortality, and the clinical outcomes in these patients...
April 1, 2024: Bone & Joint Journal
https://read.qxmd.com/read/38555748/polyelectrolyte-protein-synergism-ph-responsive-polyelectrolyte-insulin-complexes-as-versatile-carriers-for-targeted-protein-and-drug-delivery
#31
JOURNAL ARTICLE
Anastasiia Murmiliuk, Hiroki Iwase, Jia-Jhen Kang, Shilpa Mohanakumar, Marie-Sousai Appavou, Kathleen Wood, László Almásy, Adél Len, Kuno Schwärzer, Jürgen Allgaier, Martin Dulle, Thomas Gensch, Beate Förster, Kanae Ito, Hiroshi Nakagawa, Simone Wiegand, Stephan Förster, Aurel Radulescu
The co-assembly of polyelectrolytes (PE) with proteins offers a promising approach for designing complex structures with customizable morphologies, charge distribution, and stability for targeted cargo delivery. However, the complexity of protein structure limits our ability to predict the properties of the formed nanoparticles, and our goal is to identify the key triggers of the morphological transition in protein/PE complexes and evaluate their ability to encapsulate multivalent ionic drugs. A positively charged PE can assemble with a protein at pH above isoelectric point due to the electrostatic attraction and disassemble at pH below isoelectric point due to the repulsion...
March 23, 2024: Journal of Colloid and Interface Science
https://read.qxmd.com/read/38553369/the-parental-leave-paradox-in-obstetrics-and-gynecology
#32
JOURNAL ARTICLE
Steph Schatzman-Bone, Allen A Ghareeb, Megan R Sax, Tesia G Kim
Medical school, residency, and fellowship occur during peak reproductive years for most trainees. This poses certain challenges for medical trainees as they approach family-building decisions. While the demands of residency have been well-elucidated, attempts at mitigating these demands alongside parenthood have long been neglected across various specialties. These challenges are perhaps most pronounced in Obstetrics and Gynecology residency programs, which are made-up of an 85% female-identifying workforce and whose training focuses on prenatal and postpartum health...
March 28, 2024: Journal of Surgical Education
https://read.qxmd.com/read/38552257/peptide-sequence-variations-govern-hydrogel-stiffness-insights-from-a-multi-scale-structural-analysis-of-h-fqfqfk-nh-2-peptide-derivatives
#33
JOURNAL ARTICLE
Tess De Maeseneer, Thibault Cauwenbergh, James Gardiner, Jacinta F White, Wim Thielemans, Charlotte Martin, Paula Moldenaers, Steven Ballet, Ruth Cardinaels
Throughout the past decades, amphipathic peptide-based hydrogels have proven to be promising materials for biomedical applications. Amphipathic peptides are known to adopt β-sheet configurations that self-assemble into fibers that then interact to form a hydrogel network. A fundamental understanding of how the peptide sequence alters the structural properties of the hydrogels would allow for a more rational design of novel peptides for a variety of biomedical applications in the future. Therefore, the current work investigates how changing the type of amino acid, the amphipathic pattern, and the peptide length affects the secondary structure, fiber characteristics and stiffness of peptide-based hydrogels...
March 29, 2024: Macromolecular Bioscience
https://read.qxmd.com/read/38548260/elucidation-of-the-mechanisms-of-inter-domain-coupling-in-the-monomeric-state-of-enzyme-i-by-high-pressure-nmr
#34
JOURNAL ARTICLE
Sergey L Sedinkin, Julien Roche, Vincenzo Venditti
The catalytic cycle of Enzyme I (EI), a phosphotransferase enzyme responsible for converting phosphoenolpyruvate (PEP) into pyruvate, is characterized by a series of local and global conformational rearrangements. This multistep process includes a monomer-to-dimer transition, followed by an open-to-closed rearrangement of the dimeric complex upon PEP binding. In the present study, we investigate the thermodynamics of EI dimerization using a range of high-pressure solution NMR techniques complemented by SAXS experiments...
March 26, 2024: Journal of Molecular Biology
https://read.qxmd.com/read/38544887/synthesis-and-characterization-of-surface-modified-magnetic-mesoporous-silicate-materials-for-phosphate-adsorption
#35
JOURNAL ARTICLE
Ayşegül Gençer, Burcu Uysal Karataş, Önder Topel, Nadir Kiraz
The magnetic mesoporous silica material, Mag-MCM-41, was synthesized by coating magnetite (Fe3 O4 ) nanoparticles with a mesoporous material called MCM-41. Mag-MCM-41 and modified nanomaterials Mag-MCM-41-NN and Mag-MCM-41-NN-Fe+3 which were modified with aminopropyl functional groups. In water and wastewater, phosphate anions are considered significant contaminants due to their detrimental impact on the environment. They promote the growth of algae, leading to eutrophication. The purpose of this study is to investigate the removal of phosphate anions from aqueous solutions using modified magnetic silica particles...
2024: Turkish Journal of Chemistry
https://read.qxmd.com/read/38543792/structural-insights-into-plant-viruses-revealed-by-small-angle-x-ray-scattering-and-atomic-force-microscopy
#36
REVIEW
Eleonora V Shtykova, Evgeniy V Dubrovin, Alexander L Ksenofontov, Polina K Gifer, Maxim V Petoukhov, Valeriy K Tokhtar, Irina M Sapozhnikova, Andrey N Stavrianidi, Larisa V Kordyukova, Oleg V Batishchev
The structural study of plant viruses is of great importance to reduce the damage caused by these agricultural pathogens and to support their biotechnological applications. Nowadays, X-ray crystallography, NMR spectroscopy and cryo-electron microscopy are well accepted methods to obtain the 3D protein structure with the best resolution. However, for large and complex supramolecular structures such as plant viruses, especially flexible filamentous ones, there are a number of technical limitations to resolving their native structure in solution...
March 10, 2024: Viruses
https://read.qxmd.com/read/38543161/small-angle-x-ray-scattering-saxs-used-for-the-identification-of-nicomorphine-polymorphic-changes-at-the-early-stage-to-avoid-varied-stability-and-possible-side-effects
#37
JOURNAL ARTICLE
Nermina Malanovic, Giovanni Birarda, Simone Eder, Heidrun Gruber-Woelfler, Franz Reiter, Krunoslav Juraic, Aden Hodzic
In this paper, we present the identification of polymorphisms at an early stage, identified by applying non-standard methods such as SAXS. We provide an analytical approach to polymorphism in the quality/purity of an active pharmaceutical ingredient (API), supplied to a generic company by two different suppliers (i.e., manufacturers). Changes in thermodynamic polymorphism firstly become visible in traces in the larger crystal lattices, which are visible on the SAXS spectrum only using the logarithmic scale, as shown in the result figures...
March 15, 2024: Pharmaceuticals
https://read.qxmd.com/read/38541529/mesoporous-carbons-and-highly-cross-linking-polymers-for-removal-of-cationic-dyes-from-aqueous-solutions-studies-on-adsorption-equilibrium-and-kinetics
#38
JOURNAL ARTICLE
Malgorzata Zienkiewicz-Strzalka, Magdalena Blachnio, Anna Derylo-Marczewska, Szymon Winter, Malgorzata Maciejewska
This study presents the results of applying the methods of synthesizing mesoporous carbon and mesoporous polymer materials with an extended porous mesostructure as adsorbents for cationic dye molecules. Both types of adsorbents are synthetic materials. The aim of the presented research was the preparation, characterisation, and utilisation of obtained mesoporous adsorbents. The physicochemical properties, morphology, and porous structure characteristics of the obtained materials were determined using low-temperature nitrogen sorption isotherms, X-ray diffraction (XRD), small angle X-ray scattering (SAXS), and potentiometric titration measurements...
March 17, 2024: Materials
https://read.qxmd.com/read/38538957/sars-cov2-nsp1-is-a-metal-dependent-dna-and-rna-endonuclease
#39
JOURNAL ARTICLE
Bruno A Salgueiro, Margarida Saramago, Mark D Tully, Federico Issoglio, Sara T N Silva, Ana C F Paiva, Cecília M Arraiano, Pedro M Matias, Rute G Matos, Elin Moe, Célia V Romão
Over recent years, we have been living under a pandemic, caused by the rapid spread of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV2). One of the major virulence factors of Coronaviruses is the Non-structural protein 1 (Nsp1), known to suppress the host cells protein translation machinery, allowing the virus to produce its own proteins, propagate and invade new cells. To unveil the molecular mechanisms of SARS-CoV2 Nsp1, we have addressed its biochemical and biophysical properties in the presence of calcium, magnesium and manganese...
March 28, 2024: Biometals: An International Journal on the Role of Metal Ions in Biology, Biochemistry, and Medicine
https://read.qxmd.com/read/38534577/evaluation-of-the-dye-extraction-using-designed-hydrogels-for-further-applications-towards-water-treatment
#40
JOURNAL ARTICLE
Magdalena Blachnio, Malgorzata Zienkiewicz-Strzalka
In this work, novel chitosan-silica hydrogels were synthesized and investigated by various complementary techniques. The hydrogels were obtained via the immobilization of chitosan (Ch) on the surface of mesoporous cellular foams (MCFs). The latter silica materials were obtained by a sol-gel process, varying the composition of the reaction mixture (copolymer Pluronic 9400 or Pluronic 10500) and the ageing temperature conditions (80 °C or 100 °C). The role of the silica phase in the hydrogels was the formation of a scaffold for the biopolymeric chitosan component and providing chemical, mechanical, and thermal stability...
February 21, 2024: Gels
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