keyword
https://read.qxmd.com/read/38713678/development-confirmation-and-application-of-a-seeded-escherichia-coli-process-control-organism-to-validate-salmonella-enterica-serovar-typhi-environmental-surveillance-methods
#21
JOURNAL ARTICLE
Sarah E Philo, Nicolette A Zhou, Lorraine M Lillis, Venkata Raghava, Dilip Abraham, Vinoth Kumar, Nirmal Kumar, Jonathan Rigby, Joanna Ciol Harrison, Christine S Fagnant-Sperati, Alexandra L Kossik, Angelo Q W Ong, Rachael Swanstrom, Elisabeth Burnor, Bethel Demeke, Nicola K Beck, Jeffry H Shirai, Stephen J Libby, David S Boyle, Nicholas Feasey, Gagandeep Kang, John Scott Meschke
Salmonella enterica serovar Typhi (S. Typhi) is the causative agent of Typhoid fever. Blood culture is the gold standard for clinical diagnosis, but this is often difficult to employ in resource limited settings. Environmental surveillance of waste-impacted waters is a promising supplement to clinical surveillance, however validating methods is challenging in regions where S. Typhi concentrations are low. To evaluate existing S. Typhi environmental surveillance methods, a novel process control organism (PCO) was created as a biosafe surrogate...
2024: PloS One
https://read.qxmd.com/read/38713674/imaging-the-dynamics-of-murine-uterine-contractions-in-early-pregnancy
#22
JOURNAL ARTICLE
Madeline Dawson, Diana Flores, Lisa Zou, Shivani Anandasenthil, Rohit Mahesh, Olmo Zavala-Romero, Ripla Arora
Uterine muscle contractility is essential for reproductive processes including sperm and embryo transport, and during the uterine cycle to remove menstrual effluent. Even still, uterine contractions have primarily been studied in the context of preterm labor. This is partly due to a lack of methods for studying the uterine muscle contractility in the intact organ. Here, we describe an imaging-based method to evaluate mouse uterine contractility of both the longitudinal and circular muscles in the cycling stages and in early pregnancy...
May 7, 2024: Biology of Reproduction
https://read.qxmd.com/read/38713663/health-related-quality-of-life-among-people-with-diabetes-a-cross-sectional-study-in-hail-region-saudi-arabia-%C3%A2-%C3%A2
#23
JOURNAL ARTICLE
Farhan Alshammari, Mukhtar Ansari, Kashif Ullah Khan, Dinesh Neupane, Arshad Hussain, Sirajudheen Anwar, Bushra Alshammari, Awatif Alrasheeday, Shazia Jamshed, Binaya Sapkota, Abdur Rasheed
BACKGROUND: Diabetes Mellitus is a serious and expanding health problem, together with the issues of health- related quality of life (HRQoL). This further puts pressure on the government to allocate more funds for public healthcare. OBJECTIVES: This study was devised to evaluate the health-related quality of life of people living with diabetes in Hail region of Saudi Arabia. METHODS: This cross-sectional research was carried out at eight locations in the Hail region of Saudi Arabia between 21st March-20th May 2022 using the adapted version of the Euro QoL-5 dimension (EQ-5D-3L) questionnaire...
2024: PloS One
https://read.qxmd.com/read/38713661/low-illumination-fog-noise-image-denoising-method-based-on-ace-gpm
#24
JOURNAL ARTICLE
Wuyi Li, Guanglu Zhou, Xingjian Wang
The Perona-Malik (P-M) model exhibits deficiencies such as noise amplification, new noise introduction, and significant gradient effects when processing noisy images. To address these issues, this paper proposes an image-denoising algorithm, ACE-GPM, which integrates an Automatic Color Equalization (ACE) algorithm with a gradient-adjusted P-M model. Initially, the ACE algorithm is employed to enhance the contrast of low-light images obscured by fog and noise. Subsequently, the Otsu method, a technique to find the optimal threshold based on between-class variance, is applied for precise segmentation, enabling more accurate identification of different regions within the image...
2024: PloS One
https://read.qxmd.com/read/38713660/dietary-adherence-among-persons-with-type-2-diabetes-a-concurrent-mixed-methods-study
#25
JOURNAL ARTICLE
Dorothy Wilson, Abigail Kusi-Amponsah Diji, Richard Marfo, Paulina Amoh, Precious Adade Duodu, Samuel Akyirem, Douglas Gyamfi, Hayford Asare, Jerry Armah, Nancy Innocentia Ebu Enyan, Joana Kyei-Dompim
BACKGROUND: Poor adherence to dietary recommendations among persons with type 2 diabetes (T2D) can lead to long-term complications with concomitant increases in healthcare costs and mortality rates. This study aimed to identify factors associated with dietary adherence and explore the barriers and facilitators to dietary adherence among persons with T2D. METHODS: A concurrent mixed methods study was conducted in two hospitals in the Ashanti Region of Ghana. One hundred and forty-two (142) persons with T2D were consecutively sampled for the survey...
2024: PloS One
https://read.qxmd.com/read/38713649/covid-19-patient-profiles-over-four-waves-in-barcelona-metropolitan-area-a-clustering-approach
#26
MULTICENTER STUDY
Daniel Fernández, Nuria Perez-Alvarez, Gemma Molist
OBJECTIVES: Identifying profiles of hospitalized COVID-19 patients and explore their association with different degrees of severity of COVID-19 outcomes (i.e. in-hospital mortality, ICU assistance, and invasive mechanical ventilation). The findings of this study could inform the development of multiple care intervention strategies to improve patient outcomes. METHODS: Prospective multicentre cohort study during four different waves of COVID-19 from March 1st, 2020 to August 31st, 2021 in four health consortiums within the southern Barcelona metropolitan region...
2024: PloS One
https://read.qxmd.com/read/38713648/simplified-molecular-diagnosis-of-visceral-leishmaniasis-laboratory-evaluation-of-miniature-direct-on-blood-pcr-nucleic-acid-lateral-flow-immunoassay
#27
JOURNAL ARTICLE
Norbert J van Dijk, Dawit Gebreegziabiher Hagos, Daniela M Huggins, Eugenia Carrillo, Sophia Ajala, Carmen Chicharro, David Kiptanui, Jose Carlos Solana, Edwin Abner, Dawit Wolday, Henk D F H Schallig
BACKGROUND: Diagnosis of visceral leishmaniasis (VL) in resource-limited endemic regions is currently based on serological testing with rK39 immunochromatographic tests (ICTs). However, rK39 ICT frequently has suboptimal diagnostic accuracy. Furthermore, treatment monitoring and detection of VL relapses is reliant on insensitive and highly invasive tissue aspirate microscopy. Miniature direct-on-blood PCR nucleic acid lateral flow immunoassay (mini-dbPCR-NALFIA) is an innovative and user-friendly molecular tool which does not require DNA extraction and uses a lateral flow strip for result read-out...
May 2024: PLoS Neglected Tropical Diseases
https://read.qxmd.com/read/38713622/a-distinct-high-affinity-alkaline-phosphatase-facilitates-occupation-of-p-depleted-environments-by-marine-picocyanobacteria
#28
JOURNAL ARTICLE
Alberto Torcello-Requena, Andrew R J Murphy, Ian D E A Lidbury, Frances D Pitt, Richard Stark, Andrew D Millard, Richard J Puxty, Yin Chen, David J Scanlan
Marine picocyanobacteria of the genera Prochlorococcus and Synechococcus , the two most abundant phototrophs on Earth, thrive in oligotrophic oceanic regions. While it is well known that specific lineages are exquisitely adapted to prevailing in situ light and temperature regimes, much less is known of the molecular machinery required to facilitate occupancy of these low-nutrient environments. Here, we describe a hitherto unknown alkaline phosphatase, Psip1, that has a substantially higher affinity for phosphomonoesters than other well-known phosphatases like PhoA, PhoX, or PhoD and is restricted to clade III Synechococcus and a subset of high light I-adapted Prochlorococcus strains, suggesting niche specificity...
May 14, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38713566/mh2aformer-an-efficient-multiscale-hierarchical-hybrid-attention-with-a-transformer-for-bladder-wall-and-tumor-segmentation
#29
JOURNAL ARTICLE
Xiang Li, Jian Wang, Haifeng Wei, Jinyu Cong, Hongfu Sun, Pingping Wang, Benzheng Wei
Achieving accurate bladder wall and tumor segmentation from MRI is critical for diagnosing and treating bladder cancer. However, automated segmentation remains challenging due to factors such as comparable density distributions, intricate tumor morphologies, and unclear boundaries. Considering the attributes of bladder MRI images, we propose an efficient multiscale hierarchical hybrid attention with a transformer (MH2AFormer) for bladder cancer and wall segmentation. Specifically, a multiscale hybrid attention and transformer (MHAT) module in the encoder is designed to adaptively extract and aggregate multiscale hybrid feature representations from the input image...
May 7, 2024: IEEE Journal of Biomedical and Health Informatics
https://read.qxmd.com/read/38713522/deep-learning-diagnostic-classification-of-cervical-images-to-augment-colposcopic-impression
#30
JOURNAL ARTICLE
André Aquilina, Emmanouil Papagiannakis
OBJECTIVE: A deep learning classifier that improves the accuracy of colposcopic impression. METHODS: Colposcopy images taken 56 seconds after acetic acid application were processed by a cervix detection algorithm to identify the cervical region. We optimized models based on the SegFormer architecture to classify each cervix as high-grade or negative/low-grade. The data were split into histologically stratified, random training, validation, and test subsets (80%-10%-10%)...
May 7, 2024: Journal of Lower Genital Tract Disease
https://read.qxmd.com/read/38713507/effect-of-rural-trauma-team-development-on-the-outcomes-of-motorcycle-accident-related-injuries-motor-registry-project-protocol-for-a-multicenter-cluster-randomized-controlled-trial
#31
RANDOMIZED CONTROLLED TRIAL
Herman Lule, Micheal Mugerwa, Robinson Ssebuufu, Patrick Kyamanywa, Till Bärnighausen, Jussi P Posti, Michael Lowery Wilson
BACKGROUND: Injury is a global health concern, and injury-related mortality disproportionately impacts low- and middle-income countries (LMICs). Compelling evidence from observational studies in high-income countries shows that trauma education programs, such as the Rural Trauma Team Development Course (RTTDC), increase clinician knowledge of injury care. There is a dearth of such evidence from controlled clinical trials to demonstrate the effect of the RTTDC on process and patient outcomes in LMICs...
May 7, 2024: JMIR Research Protocols
https://read.qxmd.com/read/38713444/a-sandwich-structured-multifunctional-platform-based-on-self-assembled-ti-3-c-2-t-x-au-nps-films-antibiotics-and-silent-region-sers-probe-for-the-capture-determination-and-drug-resistance-analysis-of-gram-positive-bacteria
#32
JOURNAL ARTICLE
Xiangwen Qu, Pengwei Zhou, Boya Shi, Yekai Zheng, Lian Kan, Li Jiang
A multifunctional surface-enhanced Raman scattering (SERS) platform integrating sensitive detection and drug resistance analysis was developed for Gram-positive bacteria. The substrate was based on self-assembled Ti3 C2 Tx @Au NPs films and capture molecule phytic acid (IP6) to achieve specific capture of Gram-positive bacteria and different bacteria were analyzed by fingerprint signal. It had advantages of good stability and homogeneity (RSD = 8.88%). The detection limit (LOD) was 102  CFU/mL for Staphylococcus aureus and 103  CFU/mL for MRSA, respectively...
May 7, 2024: Mikrochimica Acta
https://read.qxmd.com/read/38713425/artisanal-and-small-scale-gold-mining-and-biodiversity-a-global-literature-review
#33
JOURNAL ARTICLE
Imelda M Dossou Etui, Malgorzata Stylo, Kenneth Davis, David C Evers, I Slaveykova Vera, C Wood, Mark E H Burton
Artisanal and small-scale gold mining (ASGM) is crucial to the livelihoods of close to 20 million people in over 80 countries, including 4-5 million women, mainly in rural areas with limited alternative economic prospects, particularly in developing countries. ASGM is largely informal, which can add to the challenge of addressing negative social and environmental effects including impacts on biodiversity. However, with proper guidance, ASGM can operate in a responsible manner, using cleaner production methods that minimize impacts on human health and the environment...
May 7, 2024: Ecotoxicology
https://read.qxmd.com/read/38713413/study-on-the-spatiotemporal-evolution-and-driving-factors-of-ecological-security-in-stages-based-on-the-dpsirm-sbm-model-a-case-study-of-the-yangtze-river-economic-belt
#34
JOURNAL ARTICLE
Hongmei Tan, Yanjun Zhang, Fengtai Zhang, Guochuan Peng, Caixia Jiang
Scientific assessment of urban ecological security (ES) is an important prerequisite to realize regional sustainable development. Previous studies lack the consideration of quality and poor systematic correlation, which could not reflect the internal dynamic relationship. On the basis of considering the time lag, this study divided the research process into the natural operation stage and the management feedback stage based on the driving forces, pressures, state, impacts, responses, management (DPSIRM) framework model and DEA theory, so as to effectively overcome the above shortcomings...
May 7, 2024: Environmental Management
https://read.qxmd.com/read/38713411/the-comparison-of-visibility-of-the-maxillary-sinus-septa-between-cone-beam-computed-tomography-scans-and-panoramic-radiograph-images-as-dependent-on-the-cortical-bone-thickness-a-retrospective-comparative-study
#35
COMPARATIVE STUDY
Ali Reza Ketabi, Stefan Hassfeld, Hans-Christoph Lauer, Andree Piwowarczyk
PURPOSE: To analyze the visibility of the maxillary sinus septa (MSS) in panoramic radiography (PR) versus cone beam computed tomography (CBCT) and to investigate whether the buccal cortical bone thickness (BT) or the septa dimensions influence their visibility. METHODS: Corresponding PR and CBCT images of 355 patients were selected and examined for MSS visibility. The septa dimensions (width, height, depth) and the BT were measured. Results were analysed statistically...
May 7, 2024: International Journal of Implant Dentistry
https://read.qxmd.com/read/38713384/cdh1-methylation-analysis-in-invasive-lobular-breast-carcinomas-with-and-without-gene-mutation
#36
JOURNAL ARTICLE
Silvia González-Martínez, Viera Horvathova Kajabova, Belén Pérez-Mies, Irene Carretero-Barrio, Tamara Caniego-Casas, David Sarrió, Gema Moreno-Bueno, María Gión, José Perez-García, Javier Cortés, Bozena Smolkova, José Palacios
The proposed role of CDH1 (E-cadherin gene) methylation as a mechanism of gene inactivation in invasive lobular carcinoma (ILC) remains inconclusive. For many years, CDH1 promoter hypermethylation has been regarded as a mechanism for gene inactivation in ILC. However, this assumption has primarily relied on non-quantitative assays, which have reported CDH1 methylation frequencies ranging from 26 to 93% at CpG sites within the island region. Few studies employing quantitative methods and covering CpG island shores, regions of relatively low CpG density situated proximal to conventional promoter CpGs, have been conducted, revealing lower percentages of methylation ranging from 0 to 51%...
May 7, 2024: Virchows Archiv: An International Journal of Pathology
https://read.qxmd.com/read/38713383/a-comparison-between-full-length-16s-rrna-oxford-nanopore-sequencing-and-illumina-v3-v4-16s-rrna-sequencing-in-head-and-neck-cancer-tissues
#37
COMPARATIVE STUDY
Kenny Yeo, James Connell, George Bouras, Eric Smith, William Murphy, John-Charles Hodge, Suren Krishnan, Peter-John Wormald, Rowan Valentine, Alkis James Psaltis, Sarah Vreugde, Kevin Aaron Fenix
Describing the microbial community within the tumour has been a key aspect in understanding the pathophysiology of the tumour microenvironment. In head and neck cancer (HNC), most studies on tissue samples have only performed 16S rRNA short-read sequencing (SRS) on V3-V5 region. SRS is mostly limited to genus level identification. In this study, we compared full-length 16S rRNA long-read sequencing (FL-ONT) from Oxford Nanopore Technology (ONT) to V3-V4 Illumina SRS (V3V4-Illumina) in 26 HNC tumour tissues...
May 7, 2024: Archives of Microbiology
https://read.qxmd.com/read/38713376/surgery-versus-endovascular-treatment-for-spinal-dural-arteriovenous-fistulas-a-multicenter-experience-and-systematic-literature-review
#38
MULTICENTER STUDY
Luca Zanin, Rina Di Bonaventura, Edoardo Agosti, Lodovico Terzi di Bergamo, Dino Daniele, Giorgio Saraceno, Anna Maria Auricchio, Carmelo Lucio Sturiale, Mauro Bergui, Dikran Mardighian, Guido Stura, Alessandro Pedicelli, Ettore Bresciani, Karol Migliorati, Alexander Yohan, Enrico Marchese, Alessio Albanese, Roberto Gasparotti, Anne Laure Bernat, Emmanuel Houdart, Alessandro Olivi, Sebastian Froelich, Damien Bresson, Marco Maria Fontanella, Francesco Doglietto
Surgery and endovascular therapy are the primary treatment options for spinal dural arteriovenous fistula (SDAVF). Due to the absence of a consensus regarding which therapy yields a superior outcome, we conducted a comparative analysis of the surgical and endovascular treatment of SDAVF through a multicenter case series and a systematic literature review. Patients with SDAVF, surgically or endovascularly treated at four neurosurgical centers from January 2001 to December 2021, were included in this study. Level of SDAVF, primary treatment modality, baseline and post-procedural neurological status were collected...
May 7, 2024: Neurosurgical Review
https://read.qxmd.com/read/38713353/determination-of-ecological-statuses-of-streams-in-the-ceyhan-river-basin-using-composition-and-ecological-characteristics-of-diatoms
#39
JOURNAL ARTICLE
Ömer Lekesiz, Abuzer Çelekli, Mehmet Yavuzatmaca, Muzaffer Dügel
The present study aimed to evaluate the interactions between diatoms and ecological factors in various streams and to test the suitability of diatom indices to evaluate the ecological status of 44 streams in the Ceyhan River Basin during the spring and autumn periods of 2021 and the summer of 2022. Canonical correspondence analysis indicated the significant effects of electrical conductivity (EC), dissolved oxygen, biological oxygen demand (BOD5 ), total phosphorus (TP), and total nitrogen (TN) on the distribution of diatom species of streams in the Ceyhan River Basin...
May 7, 2024: Environmental Science and Pollution Research International
https://read.qxmd.com/read/38713342/global-burden-and-trends-of-primary-liver-cancer-attributable-to-comorbid-type-2-diabetes-mellitus-among-people-living-with-hepatitis-b-an-observational-trend-study-from-1990-to-2019
#40
JOURNAL ARTICLE
Jinzhao Xie, Xiao Lin, Xiaoyan Fan, Xu Wang, Deng Pan, Jinghua Li, Yuantao Hao, Yusheng Jie, Lei Zhang, Jing Gu
BACKGROUND: Type 2 diabetes mellitus (T2DM) increases the risk of liver cancer among people living with hepatitis B virus (HBV). Our study aimed to estimate the global burden and trends of liver cancer attributable to comorbid T2DM among people living with HBV from 1990 to 2019. METHODS: We calculated the population attributable fractions (PAFs) of liver cancer attributable to comorbid T2DM among the burden of HBV-related liver cancer. We applied the PAFs to the burden of HBV-related liver cancer derived from the Global Burden of Disease (GBD) 2019 database to obtain the burden of liver cancer attributable to HBV-T2DM comorbidity...
May 7, 2024: Journal of Epidemiology and Global Health
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