keyword
https://read.qxmd.com/read/38459225/a-bird-s-eye-view-on-the-use-of-whole-exome-sequencing-in-rare-congenital-ophthalmic-diseases
#1
JOURNAL ARTICLE
Jessica Zucco, Federica Baldan, Lorenzo Allegri, Elisa Bregant, Nadia Passon, Alessandra Franzoni, Angela Valentina D'Elia, Flavio Faletra, Giuseppe Damante, Catia Mio
Phenotypic and genotypic heterogeneity in congenital ocular diseases, especially in anterior segment dysgenesis (ASD), have created challenges for proper diagnosis and classification of diseases. Over the last decade, genomic research has indeed boosted our understanding in the molecular basis of ASD and genes associated with both autosomal dominant and recessive patterns of inheritance have been described with a wide range of expressivity. Here we describe the molecular characterization of a cohort of 162 patients displaying isolated or syndromic congenital ocular dysgenesis...
March 8, 2024: Journal of Human Genetics
https://read.qxmd.com/read/38130930/differentially-expressed-genes-in-orbital-adipose-connective-tissue-of-thyroid-associated-orbitopathy
#2
JOURNAL ARTICLE
Yan Wang, Yanqiu Liu, Jiping Cai, Tianyi Zong, Ziyin Zhang, Tianhua Xie, Tong Mu, Meili Wu, Qian Yang, Yangningzhi Wang, Xiaolu Wang, Yong Yao
BACKGROUND: Thyroid-associated orbitopathy (TAO) is a disease associated with autoimmune thyroid disorders and it can lead to proptosis, diplopia, and vision-threatening compressive optic neuropathy. To comprehensively understand the molecular mechanisms underlying orbital adipogenesis in TAO, we characterize the intrinsic molecular properties of orbital adipose/connective tissue from patients with TAO and control individuals. METHODS: RNA sequencing analysis (RNA-seq) was performed to measure the gene expression of orbital adipose/connective tissues of TAO patients...
2023: PeerJ
https://read.qxmd.com/read/37808736/synchronized-long-read-genome-methylome-epigenome-and-transcriptome-for-resolving-a-mendelian-condition
#3
Mitchell R Vollger, Jonas Korlach, Kiara C Eldred, Elliott Swanson, Jason G Underwood, Yong-Han H Cheng, Jane Ranchalis, Yizi Mao, Elizabeth E Blue, Ulrike Schwarze, Katherine M Munson, Christopher T Saunders, Aaron M Wenger, Aimee Allworth, Sirisak Chanprasert, Brittney L Duerden, Ian Glass, Martha Horike-Pyne, Michelle Kim, Kathleen A Leppig, Ian J McLaughlin, Jessica Ogawa, Elisabeth A Rosenthal, Sam Sheppeard, Stephanie M Sherman, Samuel Strohbehn, Amy L Yuen, Thomas A Reh, Peter H Byers, Michael J Bamshad, Fuki M Hisama, Gail P Jarvik, Yasemin Sancak, Katrina M Dipple, Andrew B Stergachis
Resolving the molecular basis of a Mendelian condition (MC) remains challenging owing to the diverse mechanisms by which genetic variants cause disease. To address this, we developed a synchronized long-read genome, methylome, epigenome, and transcriptome sequencing approach, which enables accurate single-nucleotide, insertion-deletion, and structural variant calling and diploid de novo genome assembly, and permits the simultaneous elucidation of haplotype-resolved CpG methylation, chromatin accessibility, and full-length transcript information in a single long-read sequencing run...
September 27, 2023: bioRxiv
https://read.qxmd.com/read/37750449/external-genitalia-phenotypes-of-a-mab21l1-null-mouse-model-for-cerebellar-ocular-craniofacial-and-genital-cofg-syndrome
#4
JOURNAL ARTICLE
Watcharapon Promsut, Ryuichi Yamada, Shohei Takami, Nanae Miyazaki, Mami Uemura, Ryuji Hiramatsu, Naoki Takahashi, Yoshiakira Kanai
The cerebellar, ocular, craniofacial, and genital (COFG) syndrome is a human genetic disease that is caused by MAB21L1 mutations. A COFG mouse model with Mab21l1-null mutation causes severe microphthalmia and fontanelle dysosteogenesis, similar to the symptoms in human patients. One of the typical symptoms is scrotal agenesis in male infants, while male Mab21l1-null mice show hypoplastic preputial glands, a rodent-specific derivative of the cranial scrotal fold. However, it is still unclear where and how MAB21Ll acts in the external genitalia in both mice and humans...
September 26, 2023: Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology
https://read.qxmd.com/read/36892533/missense-mutations-in-mab21l1-causation-of-novel-autosomal-dominant-ocular-bamd-syndrome
#5
JOURNAL ARTICLE
Panfeng Wang, Pengsen Wu, Junwen Wang, Yiyan Zeng, Yi Jiang, Yingwei Wang, Shiqiang Li, Xueshan Xiao, Qingjiong Zhang
PURPOSE: Biallelic MAB21L1 variants have been reported to cause autosomal recessive cerebellar, ocular, craniofacial, and genital syndrome (COFG), whereas only five heterozygous pathogenic variants have been suspected to cause autosomal dominant (AD) microphthalmia and aniridia in eight families. This study aimed to report an AD ocular syndrome (blepharophimosis plus anterior segment and macular dysgenesis [BAMD]) syndrome based on clinical and genetic findings from patients with monoallelic MAB21L1 pathogenic variants in our cohort and reported cases...
March 1, 2023: Investigative Ophthalmology & Visual Science
https://read.qxmd.com/read/36446583/single-amino-acid-variation-in-mab21l1-is-dominantly-associated-with-congenital-eye-defects
#6
JOURNAL ARTICLE
Fanlei Meng, Xin Li, Jinlu Zhang, Zhiyang Gao, Xue Yang, Ziqi Liu, Yajie Liu, Tong Guo, Likun Wang, Liping Yang, Zhaohui Wang
BACKGROUND: Diagnosis of a genetic disease and determination of the causative molecular lesion rely on the availability of the disease-associated pedigrees. Microphthalmia is a congenital eye defect due to an insufficiently developed visual system; its prevalence is 1-3 in 10 000 live births. OBJECTIVE: We analysed a pedigree exhibiting autosomal dominant inheritance of microphthalmia to determine the genetic lesion; used AlphaFold2 to predict the changes in the protein's 3-Dimensional structure; and compared wild-type and variant proteins in cultured cells or Drosophila model was used to explore the cellular or developmental function of the encoded product...
November 29, 2022: Journal of Medical Genetics
https://read.qxmd.com/read/36413568/monoallelic-variants-resulting-in-substitutions-of-mab21l1-arg51-cause-aniridia-and-microphthalmia
#7
JOURNAL ARTICLE
Hildegard Nikki Hall, Hemant Bengani, Robert B Hufnagel, Giuseppe Damante, Morad Ansari, Joseph A Marsh, Graeme R Grimes, Alex von Kriegsheim, David Moore, Lisa McKie, Jamalia Rahmat, Catia Mio, Moira Blyth, Wee Teik Keng, Lily Islam, Meriel McEntargart, Marcel M Mannens, Veronica Van Heyningen, Joe Rainger, Brian P Brooks, David R FitzPatrick
Classical aniridia is a congenital and progressive panocular disorder almost exclusively caused by heterozygous loss-of-function variants at the PAX6 locus. We report nine individuals from five families with severe aniridia and/or microphthalmia (with no detectable PAX6 mutation) with ultrarare monoallelic missense variants altering the Arg51 codon of MAB21L1. These mutations occurred de novo in 3/5 families, with the remaining families being compatible with autosomal dominant inheritance. Mice engineered to carry the p...
2022: PloS One
https://read.qxmd.com/read/35951367/mab21l1-promotes-survival-of-lens-epithelial-cells-through-control-of-%C3%AE-b-crystallin-and-atr-chk1-p53-pathway
#8
JOURNAL ARTICLE
Yuan Xiao, Jia-Wen Xiang, Qian Gao, Yue-Yue Bai, Zhao-Xia Huang, Xiao-Hui Hu, Ling Wang, David Wan-Cheng Li
The male abnormal gene family 21 ( mab21 ), was initially identified in C. elegans . Since its identification, studies from different groups have shown that it regulates development of ocular tissues, brain, heart and liver. However, its functional mechanism remains largely unknown. Here, we demonstrate that Mab21L1 promotes survival of lens epithelial cells. Mechanistically, Mab21L1 upregulates expression of αB-crystallin. Moreover, our results show that αB-crystallin prevents stress-induced phosphorylation of p53 at S-20 and S-37 through abrogating the activation of the upstream kinases, ATR and CHK1...
August 10, 2022: Aging
https://read.qxmd.com/read/34967033/anisodamine-affects-the-pigmentation-mineral-density-craniofacial-area-and-eye-development-in-zebrafish-embryos
#9
JOURNAL ARTICLE
Binjie Wang, Tianyi Chen, Anli Wang, Jiakai Fang, Jiye Wang, Weixuan Yao, Yuanzhao Wu
Anisodamine is one of the major components of the tropine alkaloid family and is widely used in the treatment of pain, motion sickness, pupil dilatation, and detoxification of organophosphorus poisoning. As a muscarinic receptor antagonist, the low toxicity and moderate drug effect of anisodamine often result in high doses for clinical use, making it important to fully investigate its toxicity. In this study, zebrafish embryos were exposed to 1.3-, 2.6-, and 5.2-mM anisodamine for 7 days to study the toxic effects of drug exposure on pigmentation, mineral density, craniofacial area, and eye development...
June 2022: Journal of Applied Toxicology: JAT
https://read.qxmd.com/read/34779479/mab21l1-modulates-gene-expression-and-dna-metabolic-processes-in-the-lens-placode
#10
JOURNAL ARTICLE
Ryuichi Yamada, Akira Oguri, Katsunori Fujiki, Katsuhiko Shirahige, Yoshikazu Hirate, Masami Kanai-Azuma, Hirotaka Takezoe, Yoshihiro Akimoto, Naoki Takahashi, Yoshiakira Kanai
Mutations in human MAB21L1 cause aberrations in lens ectoderm morphogenesis and lead to congenital cerebellar, ocular, craniofacial and genital (COFG) syndrome. Murine Mab21l1-null mutations cause severe cell-autonomous defects in lens formation, leading to microphthalmia; therefore, Mab21l1-null mice are used as a mouse model for COFG syndrome. In this study, we investigated the early-onset single-cell-level phenotypes of murine Mab21l1-null lens ectoderms using electron microscopy and single-cell RNA sequencing (scRNA-seq)...
December 1, 2021: Disease Models & Mechanisms
https://read.qxmd.com/read/34573300/13q-deletion-syndrome-involving-rb1-characterization-of-a-new-minimal-critical-region-for-psychomotor-delay
#11
JOURNAL ARTICLE
Flavia Privitera, Arianna Calonaci, Gabriella Doddato, Filomena Tiziana Papa, Margherita Baldassarri, Anna Maria Pinto, Francesca Mari, Ilaria Longo, Mauro Caini, Daniela Galimberti, Theodora Hadjistilianou, Sonia De Francesco, Alessandra Renieri, Francesca Ariani
Retinoblastoma (RB) is an ocular tumor of the pediatric age caused by biallelic inactivation of the RB1 gene (13q14). About 10% of cases are due to gross-sized molecular deletions. The deletions can involve the surrounding genes delineating a contiguous gene syndrome characterized by RB, developmental anomalies, and peculiar facial dysmorphisms. Overlapping deletions previously found by traditional and/or molecular cytogenetic analysis allowed to define some critical regions for intellectual disability (ID) and multiple congenital anomalies, with key candidate genes...
August 26, 2021: Genes
https://read.qxmd.com/read/33973683/identification-of-missense-mab21l1-variants-in-microphthalmia-and-aniridia
#12
JOURNAL ARTICLE
Sarah E Seese, Linda M Reis, Brett Deml, Christopher Griffith, Adi Reich, Robyn V Jamieson, Elena V Semina
Microphthalmia, coloboma, and aniridia are congenital ocular phenotypes with a strong genetic component but often unknown cause. We present a likely causative novel variant in MAB21L1, c.152G>T p.(Arg51Leu), in two family members with microphthalmia and aniridia, as well as novel or rare compound heterozygous variants of uncertain significance, c.184C>T p.(Arg62Cys)/c.-68T>C, and c.658G>C p.(Gly220Arg)/c.*529A>G, in two additional probands with microphthalmia, coloboma and/or cataracts. All variants were predicted damaging by in silico programs...
May 11, 2021: Human Mutation
https://read.qxmd.com/read/33570754/genetic-disruption-of-zebrafish-mab21l1-reveals-a-conserved-role-in-eye-development-and-affected-pathways
#13
JOURNAL ARTICLE
Sarah E Seese, Brett Deml, Sanaa Muheisen, Elena Sorokina, Elena V Semina
BACKGROUND: The male-abnormal 21 like (MAB21L) genes are important in human ocular development. Homozygous loss of MAB21L1 leads to corneal dystrophy in all affected individuals along with cataracts and buphthalmos in some. The molecular function and downstream pathways of MAB21L factors are largely undefined. RESULTS: We generated the first mab21l1 zebrafish mutant carrying a putative loss-of-function allele, c.107delA p.(Lys36Argfs*7). At the final stages of embryonic development, homozygous mab21l1c...
August 2021: Developmental Dynamics
https://read.qxmd.com/read/32824035/genome-wide-assessment-of-runs-of-homozygosity-in-chinese-wagyu-beef-cattle
#14
JOURNAL ARTICLE
Guoyao Zhao, Tianliu Zhang, Yuqiang Liu, Zezhao Wang, Lei Xu, Bo Zhu, Xue Gao, Lupei Zhang, Huijiang Gao, George E Liu, Junya Li, Lingyang Xu
Runs of homozygosity (ROH) are continuous homozygous regions that generally exist in the DNA sequence of diploid organisms. Identifications of ROH leading to reduction in performance can provide valuable insight into the genetic architecture of complex traits. Here, we evaluated genome-wide patterns of homozygosity and their association with important traits in Chinese Wagyu beef cattle. We identified a total of 29,271 ROH segments from 462 animals. Within each animal, an average number of ROH was 63.36 while an average length was 62...
August 14, 2020: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/31593902/cgas-and-cd-ntase-enzymes-structure-mechanism-and-evolution
#15
REVIEW
Philip J Kranzusch
Cyclic GMP-AMP synthase (cGAS) is a signaling enzyme in human cells that controls immune-sensing of cytosolic DNA. The recent discoveries of diverse structural homologs of cGAS in animals and bacteria reveal that cGAS-like signaling is surprisingly ancient and widespread in biology. Together with the Vibrio cholerae protein dinucleotide cyclase in Vibrio (DncV), cGAS and DncV homologs comprise a family of cGAS/DncV-like nucleotidyltransferase (CD-NTase) enzymes that synthesize noncanonical RNA signals including cyclic dinucleotides, cyclic trinucleotides, and linear oligonucleotides...
December 2019: Current Opinion in Structural Biology
https://read.qxmd.com/read/31174021/induced-chromosomal-aneuploidy-results-in-global-and-consistent-deregulation-of-the-transcriptome-of-cancer-cells
#16
JOURNAL ARTICLE
Darawalee Wangsa, Rüdiger Braun, Christina H Stuelten, Markus Brown, Kerry M Bauer, Georg Emons, Leigh A Weston, Yue Hu, Howard H Yang, Maria Vila-Casadesús, Maxwell P Lee, Philip Brauer, Lidia Warner, Madhvi Upender, Amanda B Hummon, Jordi Camps, Thomas Ried
Chromosomal aneuploidy is a defining feature of epithelial cancers. The pattern of aneuploidies is cancer-type specific. For instance, the gain of chromosome 13 occurs almost exclusively in colorectal cancer. We used microcell-mediated chromosome transfer to generate gains of chromosome 13 in the diploid human colorectal cancer cell line DLD-1. Extra copies of chromosome 13 resulted in a significant and reproducible up-regulation of transcript levels of genes on chromosome 13 (P = .0004, FDR = 0.01) and a genome-wide transcriptional deregulation in all 8 independent clones generated...
July 2019: Neoplasia: An International Journal for Oncology Research
https://read.qxmd.com/read/30487245/mab21l1-loss-of-function-causes-a-syndromic-neurodevelopmental-disorder-with-distinctive-c-erebellar-o-cular-cranio-f-acial-and-g-enital-features-cofg-syndrome
#17
JOURNAL ARTICLE
Abolfazl Rad, Umut Altunoglu, Rebecca Miller, Reza Maroofian, Kiely N James, Ahmet Okay Çağlayan, Maryam Najafi, Valentina Stanley, Rose-Mary Boustany, Gözde Yeşil, Afsaneh Sahebzamani, Gülhan Ercan-Sencicek, Kolsoum Saeidi, Kaman Wu, Peter Bauer, Zeineb Bakey, Joseph G Gleeson, Natalie Hauser, Murat Gunel, Hulya Kayserili, Miriam Schmidts
BACKGROUND: Putative nucleotidyltransferase MAB21L1 is a member of an evolutionarily well-conserved family of the male abnormal 21 (MAB21)-like proteins. Little is known about the biochemical function of the protein; however, prior studies have shown essential roles for several aspects of embryonic development including the eye, midbrain, neural tube and reproductive organs. OBJECTIVE: A homozygous truncating variant in MAB21L1 has recently been described in a male affected by intellectual disability, scrotal agenesis, ophthalmological anomalies, cerebellar hypoplasia and facial dysmorphism...
May 2019: Journal of Medical Genetics
https://read.qxmd.com/read/29156428/involvement-of-the-mab21l1-gene-in-calvarial-osteogenesis
#18
JOURNAL ARTICLE
Dan Nguyen, Ryuichi Yamada, Nodoka Yoshimitsu, Akira Oguri, Takuya Kojima, Naoki Takahashi
The Mab-21 gene family is crucial for animal development. A deficiency in the Mab-21 genes associates with several defects, including skeletal malformation in mice and humans. In this study, we observed that mice lacking Mab21l1 displayed an unclosed fontanelle, suggesting impaired calvarial bone development. Cells isolated from the calvaria of these mice showed a greater osteoblast differentiation potential as evidenced by the abundance of mineralized bone nodules and higher expression levels of osteogenic markers than wild-type cells...
November 2017: Differentiation; Research in Biological Diversity
https://read.qxmd.com/read/27558071/the-male-abnormal-gene-family-21-mab21-members-regulate-eye-development
#19
REVIEW
Z-X Huang, J-W Xiang, L Zhou, Q Nie, L Wang, Z-G Chen, X-H Hu, Y Xiao, W-J Qing, Y-F Liu, Q Sun, X-C Tang, F-Y Liu, Z-W Luo, W-B Liu, D W-C Li
The male abnormal gene family contains 3 members, named mab21l1, mab21l2 and mab21l3. Since their first discovery in C. elegans, homologues of mab21l1 and mab21l2 have been found in Drosophila, Zebrafish, Xenopus, chicken, mouse and human. A number of studies have revealed that mab21 gene family members, mab21l1 and mab21l2, play important roles in regulating eye development. Here, we review the functions of the mab genes in regulating ocular development.
2016: Current Molecular Medicine
https://read.qxmd.com/read/27271801/structural-and-biochemical-characterization-of-the-cell-fate-determining-nucleotidyltransferase-fold-protein-mab21l1
#20
JOURNAL ARTICLE
Carina C de Oliveira Mann, Reiner Kiefersauer, Gregor Witte, Karl-Peter Hopfner
The exceptionally conserved metazoan MAB21 proteins are implicated in cell fate decisions and share considerable sequence homology with the cyclic GMP-AMP synthase. cGAS is the major innate immune sensor for cytosolic DNA and produces the second messenger 2'-5', 3'-5' cyclic GMP-AMP. Little is known about the structure and biochemical function of other proteins of the cGAS-MAB21 subfamily, such as MAB21L1, MAB21L2 and MAB21L3. We have determined the crystal structure of human full-length MAB21L1. Our analysis reveals high structural conservation between MAB21L1 and cGAS but also uncovers important differences...
June 8, 2016: Scientific Reports
keyword
keyword
115884
1
2
Fetch more papers »
Fetching more papers... Fetching...
Remove bar
Read by QxMD icon Read
×

Save your favorite articles in one place with a free QxMD account.

×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"

We want to hear from doctors like you!

Take a second to answer a survey question.