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https://www.readbyqxmd.com/read/28694498/analysis-of-positive-and-negative-allosteric-modulation-in-metabotropic-glutamate-receptors-4-and-5-with-a-dual-ligand
#1
James A R Dalton, Jean-Philippe Pin, Jesús Giraldo
As class C GPCRs and regulators of synaptic activity, human metabotropic glutamate receptors (mGluRs) 4 and 5 are prime targets for allosteric modulation, with mGlu5 inhibition or mGlu4 stimulation potentially treating conditions like chronic pain and Parkinson's disease. As an allosteric modulator that can bind both receptors, 2-Methyl-6-(phenylethynyl)pyridine (MPEP) is able to negatively modulate mGlu5 or positively modulate mGlu4. At a structural level, how it elicits these responses and how mGluRs undergo activation is unclear...
July 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28679637/mechanism-based-inactivator-of-isocitrate-lyases-1-and-2-from-mycobacterium-tuberculosis
#2
Truc V Pham, Andrew S Murkin, Margaret M Moynihan, Lawrence Harris, Peter C Tyler, Nishant Shetty, James C Sacchettini, Hsiao-Ling Huang, Thomas D Meek
Isocitrate lyase (ICL, types 1 and 2) is the first enzyme of the glyoxylate shunt, an essential pathway for Mycobacterium tuberculosis (Mtb) during the persistent phase of human TB infection. Here, we report 2-vinyl-d-isocitrate (2-VIC) as a mechanism-based inactivator of Mtb ICL1 and ICL2. The enzyme-catalyzed retro-aldol cleavage of 2-VIC unmasks a Michael substrate, 2-vinylglyoxylate, which then forms a slowly reversible, covalent adduct with the thiolate form of active-site Cys191 2-VIC displayed kinetic properties consistent with covalent, mechanism-based inactivation of ICL1 and ICL2 with high efficiency (partition ratio, <1)...
July 18, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28581512/structural-basis-for-the-cooperative-allosteric-activation-of-the-free-fatty-acid-receptor-gpr40
#3
Jun Lu, Noel Byrne, John Wang, Gerard Bricogne, Frank K Brown, Harry R Chobanian, Steven L Colletti, Jerry Di Salvo, Brande Thomas-Fowlkes, Yan Guo, Dawn L Hall, Jennifer Hadix, Nicholas B Hastings, Jeffrey D Hermes, Thu Ho, Andrew D Howard, Hubert Josien, Maria Kornienko, Kevin J Lumb, Michael W Miller, Sangita B Patel, Barbara Pio, Christopher W Plummer, Bradley S Sherborne, Payal Sheth, Sarah Souza, Srivanya Tummala, Clemens Vonrhein, Maria Webb, Samantha J Allen, Jennifer M Johnston, Adam B Weinglass, Sujata Sharma, Stephen M Soisson
Clinical studies indicate that partial agonists of the G-protein-coupled, free fatty acid receptor 1 GPR40 enhance glucose-dependent insulin secretion and represent a potential mechanism for the treatment of type 2 diabetes mellitus. Full allosteric agonists (AgoPAMs) of GPR40 bind to a site distinct from partial agonists and can provide additional efficacy. We report the 3.2-Å crystal structure of human GPR40 (hGPR40) in complex with both the partial agonist MK-8666 and an AgoPAM, which exposes a novel lipid-facing AgoPAM-binding pocket outside the transmembrane helical bundle...
July 2017: Nature Structural & Molecular Biology
https://www.readbyqxmd.com/read/28336329/an-aromatic-amino-acid-within-intracellular-loop-2-of-the-prostaglandin-ep2-receptor-is-a-prerequisite-for-selective-association-and-activation-of-g%C3%AE-s
#4
Akiko Yano, Yuko Takahashi, Hiromi Moriguchi, Tomoaki Inazumi, Tomoaki Koga, Akira Otaka, Yukihiko Sugimoto
We previously demonstrated that the aromatic moiety of Tyr(143) within the intracellular loop 2 (ICL2) region of the prostaglandin EP2 receptor plays a crucial role in Gs coupling. Here we investigated whether the ICL2 of the EP2 receptor directly binds to Gαs and whether an aromatic moiety affects this interaction. In Chinese hamster ovary cells, mutations of Tyr(143) reduced the ability of the EP2 receptor to interact with G proteins as demonstrated by GTPγS sensitivity, as well as the ability of agonist-induced cAMP formation, with the rank order of Phe>Tyr (wild-type)=Trp>Leu>Ala (=0)...
June 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/28256674/piperazine-functionalized-c60-and-diiodine-or-iodine-monochloride-as-components-in-forming-supramolecular-assemblies
#5
Amineh Aghabali, Sharon Jun, Marilyn M Olmstead, Alan L Balch
The reaction of the piperazine mono-adduct, N(CH2CH2)2NC60, with diiodine produced well ordered, black crystals of (I2N(CH2CH2)2NI2)C60·2.884(C6H6)·0.116I2, which contains two nearly linear N-I-I units. Reaction of N(CH2CH2)2NC60 with iodine monochloride produced two materials: the dihalogen adduct, (ClIN(CH2CH2)2NICl)C60·2.3(CS2)·0.7(CH2Cl2), when crystallization occurred rapidly from carbon disulfide/dichloromethane solution or the salt, [(N(CH2CH2)2NH)C60(+)][ICl2(-)]·CS2, when crystallization happened more slowly from toluene/dichloromethane solution where hydrolysis of the iodine monochloride by adventitious water presumably occurred...
March 14, 2017: Dalton Transactions: An International Journal of Inorganic Chemistry
https://www.readbyqxmd.com/read/28213525/conformational-profiling-of-the-at1-angiotensin-ii-receptor-reflects-biased-agonism-g-protein-coupling-and-cellular-context
#6
Dominic Devost, Rory Sleno, Darlaine Pétrin, Alice Zhang, Yuji Shinjo, Rakan Okde, Junken Aoki, Asuka Inoue, Terence E Hébert
Here, we report the design and use of G protein-coupled receptor-based biosensors to monitor ligand-mediated conformational changes in receptors in intact cells. These biosensors use bioluminescence resonance energy transfer with Renilla luciferase (RlucII) as an energy donor, placed at the distal end of the receptor C-tail, and the small fluorescent molecule FlAsH as an energy acceptor, its binding site inserted at different positions throughout the intracellular loops and C-terminal tail of the angiotensin II type I receptor...
March 31, 2017: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/28041939/involvement-of-the-coatomer-protein-complex-i-in-the-intracellular-traffic-of-the-delta-opioid-receptor
#7
Étienne St-Louis, Jade Degrandmaison, Sébastien Grastilleur, Samuel Génier, Véronique Blais, Christine Lavoie, Jean-Luc Parent, Louis Gendron
The delta opioid receptor (DOPr) is known to be mainly expressed in intracellular compartments. It remains unknown why DOPr is barely exported to the cell surface, but it seems that a substantial proportion of the immature receptor is trapped within the endoplasmic reticulum (ER) and the Golgi network. In the present study, we performed LC-MS/MS analysis to identify putative protein partners involved in the retention of DOPr. Analysis of the proteins co-immunoprecipitating with Flag-DOPr in transfected HEK293 cells revealed the presence of numerous subunits of the coatomer protein complex I (COPI), a vesicle-coating complex involved in recycling resident proteins from the Golgi back to the ER...
December 30, 2016: Molecular and Cellular Neurosciences
https://www.readbyqxmd.com/read/27897283/identification-of-photofragmentation-patterns-in-trihalide-anions-by-global-analysis-of-vibrational-wavepacket-dynamics-in-broadband-transient-absorption-data
#8
Sebastian Schott, Lea Ress, Jan Hrušák, Patrick Nuernberger, Tobias Brixner
Trihalide anions are linear molecules that can be photodissociated with ultraviolet (UV) light. Whereas deep-UV excitation leads to three-body dissociation, for near-UV excitation just one molecular bond is cleaved, which notionally opens up the possibility for different fragmentation patterns. Here, we explore whether the dihalide fragment is formed as an anionic or neutral species and whether heteronuclear trihalides can lead to two different dihalides. The analysis is based on pronounced wavepacket dynamics induced by femtosecond UV pulses and associated both with the initial trihalide and the nascent dihalide species...
December 7, 2016: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/27801588/conformational-heterogeneity-of-intracellular-loop-3-of-the-%C3%AE-opioid-g-protein-coupled-receptor
#9
Jing Huang, Sirish Kaushik Lakkaraju, Andrew Coop, Alexander D MacKerell
G-protein coupled receptors (GPCRs), including the μ-opioid receptor, interact with G-proteins and other proteins via their intracellular face as required for signal transduction. However, characterization of the structure of the intracellular face of GPCRs is complicated by the experimental methods used for structural characterization. In the present study we undertook a series of long-time molecular dynamics (MD) simulations, ranging from 1 to 5 μs, on the μ-opioid receptor in both the dimeric and monomeric states...
November 23, 2016: Journal of Physical Chemistry. B
https://www.readbyqxmd.com/read/26964814/nested-reverse-transcriptase-polymerase-chain-reactions-targeting-the-messenger-rna-of-icl2-hspx-and-rrnap1-genes-to-detect-viable-mycobacterium-tuberculosis-directly-from-clinical-specimens
#10
Dhanurekha Lakshmipathy, Lily Therese Kulandai, Gayathri Ramasubban, Madhavan Hajib Narahari Rao, Sridhar Rathinam, Meenakshi Narasimhan
There is an urgent need for a rapid and reliable test to detect actively multiplying Mycobacterium tuberculosis directly from clinical specimens for an early initiation of the appropriate antituberculous treatment. This study was aimed at the optimization and application of nested reverse transcriptase-PCR (nRT-PCR) targeting the messenger RNA of the icl2, hspx, and rRNAP1 genes directly from sputum specimens, and their evaluation against the culture by the BACTEC MicroMGIT mycobacterial culture system. 203 Sputum samples from clinically suspected tuberculosis patients and 30 control specimens (clinically proven viral or bacterial infections other than tuberculosis) were included in this study...
December 2015: International Journal of Mycobacteriology
https://www.readbyqxmd.com/read/26717821/a-novel-vortex-assisted-liquid-liquid-microextraction-approach-using-auxiliary-solvent-determination-of-iodide-in-mineral-water-samples
#11
Serhii Zaruba, Andriy B Vishnikin, Vasil Andruch
A novel vortex-assisted liquid-liquid microextraction (VA-LLME) for determination of iodide was developed. The method includes the oxidation of iodide with iodate in the presence of hydrochloric acid followed by VA-LLME of the ion-pair formed between ICl2(-) and Astra Phloxine reagent (AP) and subsequent absorbance measurement at 555nm. The appropriate experimental conditions were investigated and found to be: 5mL of sample, 0.27molL(-)(1) HCl, 0.027mmolL(-1) KIO3 as the oxidation agent, 250μL of extraction mixture containing amyl acetate as the extraction solvent and carbon tetrachloride as the auxiliary solvent (1:1, v/v), 0...
2016: Talanta
https://www.readbyqxmd.com/read/26708364/electrochemistry-of-iodide-iodine-and-iodine-monochloride-in-chloride-containing-nonhaloaluminate-ionic-liquids
#12
Cameron L Bentley, Alan M Bond, Anthony F Hollenkamp, Peter J Mahon, Jie Zhang
The electrochemical behavior of iodine remains a contemporary research interest due to the integral role of the I(-)/I3(-) couple in dye-sensitized solar cell technology. The neutral (I2) and positive (I(+)) oxidation states of iodine are known to be strongly electrophilic, and thus the I(-)/I2/I(+) redox processes are sensitive to the presence of nucleophilic chloride or bromide, which are both commonly present as impurities in nonhaloaluminate room temperature ionic liquids (ILs). In this study, the electrochemistry of I(-), I2, and ICl has been investigated by cyclic voltammetry at a platinum macrodisk electrode in a binary IL mixture composed of 1-butyl-3-methylimidazolium chloride ([C4mim]Cl) and 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([C2mim][NTf2])...
February 2, 2016: Analytical Chemistry
https://www.readbyqxmd.com/read/26254469/the-ribosome-sec61-translocon-complex-forms-a-cytosolically-restricted-environment-for-early-polytopic-membrane-protein-folding
#13
Melissa A Patterson, Anannya Bandyopadhyay, Prasanna K Devaraneni, Josha Woodward, LeeAnn Rooney, Zhongying Yang, William R Skach
Transmembrane topology of polytopic membrane proteins (PMPs) is established in the endoplasmic reticulum (ER) by the ribosome Sec61-translocon complex (RTC) through iterative cycles of translocation initiation and termination. It remains unknown, however, whether tertiary folding of transmembrane domains begins after the nascent polypeptide integrates into the lipid bilayer or within a proteinaceous environment proximal to translocon components. To address this question, we used cysteine scanning mutagenesis to monitor aqueous accessibility of stalled translation intermediates to determine when, during biogenesis, hydrophilic peptide loops of the aquaporin-4 (AQP4) water channel are delivered to cytosolic and lumenal compartments...
November 27, 2015: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/26080355/studying-the-binding-interactions-of-allosteric-agonists-and-antagonists-of-the-cxcr4-receptor
#14
COMPARATIVE STUDY
Jesús M Planesas, Violeta I Pérez-Nueno, José I Borrell, Jordi Teixidó
Several examples of allosteric modulators of GPCRs have been reported recently in the literature, but understanding their molecular mechanism presents a new challenge for medicinal chemistry. For the specific case of the cellular receptor CXCR4, it is known that pepducins (lipidated fragments of intracellular GPCR loops) such as ATI-2341 modulate CXCR4 activity agonistically via an allosteric mechanism. Moreover, there are also examples of small organic molecules such as AMD11070 and GSK812397 which may also act as allosteric antagonists...
July 2015: Journal of Molecular Graphics & Modelling
https://www.readbyqxmd.com/read/25987565/the-transmission-interfaces-contribute-asymmetrically-to-the-assembly-and-activity-of-human-p-glycoprotein
#15
Tip W Loo, David M Clarke
P-glycoprotein (P-gp; ABCB1) is an ABC drug pump that protects us from toxic compounds. It is clinically important because it confers multidrug resistance. The homologous halves of P-gp each contain a transmembrane (TM) domain (TMD) with 6 TM segments followed by a nucleotide-binding domain (NBD). The drug- and ATP-binding sites reside at the interface between the TMDs and NBDs, respectively. Each NBD is connected to the TMDs by a transmission interface involving a pair of intracellular loops (ICLs) that form ball-and-socket joints...
July 3, 2015: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/25955696/expression-and-properties-of-the-glyoxysomal-and-cytosolic-forms-of-isocitrate-lyase-in-amaranthus-caudatus-l
#16
Alexander T Eprintsev, Dmitry N Fedorin, Alexei V Salnikov, Abir U Igamberdiev
Isocitrate lyase (EC 4.1.3.1) catalyzes the reversible conversion of d-isocitrate to succinate and glyoxylate. It is usually associated with the glyoxylate cycle in glyoxysomes, although the non-glyoxysomal form has been reported and its relation to interconversion of organic acids outside the glyoxylate cycle suggested. We investigated the expression of two isocitrate lyase genes and activities of the glyoxysomal (ICL1) and cytosolic (ICL2) forms of isocitrate lyase in amaranth (Amaranthus caudatus L.) seedlings...
June 1, 2015: Journal of Plant Physiology
https://www.readbyqxmd.com/read/25640670/on-the-interactions-between-nucleotide-binding-domains-and-membrane-spanning-domains-in-cystic-fibrosis-transmembrane-regulator-a-molecular-dynamic-study
#17
Luca Belmonte, Oscar Moran
The Cystic Fibrosis Transmembrane Regulator (CFTR) is a membrane protein whose mutations cause cystic fibrosis, a lethal genetic disease. We performed a molecular dynamic (MD) study of the properties of the nucleotide binding domains (NBD) whose conformational changes, upon ATP binding, are the direct responsible of the gating mechanisms of CFTR. This study was done for the wild type (WT) CFTR and for the two most common mutations, ΔF508, that produces a traffic defect of the protein, and the mutation G551D, that causes a gating defect on CFTR...
April 2015: Biochimie
https://www.readbyqxmd.com/read/25494239/understanding-the-conformation-transition-in-the-activation-pathway-of-%C3%AE-2-adrenergic-receptor-via-a-targeted-molecular-dynamics-simulation
#18
Xiuchan Xiao, Xiaojun Zeng, Yuan Yuan, Nan Gao, Yanzhi Guo, Xuemei Pu, Menglong Li
G protein coupled receptors (GPCRs) play a crucial role in regulating signal recognition and transduction through their activation. The conformation transition in the activation pathway is of particular importance for their function. However, it has been poorly elucidated due to experimental difficulties in determining the conformations and the time limitation of conventional molecular dynamics (CMD) simulation. Thus, in this work, we employed a targeted molecular dynamic (TMD) simulation to study the activation process from an inactive structure to a fully active one for β2 adrenergic receptor (β2AR)...
January 28, 2015: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/25437250/a-2-2-bipyridine-coordination-complex-of-icl%C3%A2-%C3%A2-%C2%BA
#19
Andrew J M Shaw, Robert Corbo, David J D Wilson, Jason L Dutton
The formation of a new class of I(III) compound is reported; an N,N' chelated iodine cation ([bpy-ICl2](+); bpy = 2,2'-bipyridine). The complex is obtained as an [ICl4](-) salt and is formed via simple reaction of bpy with ICl3. The compound is relatively unstable, but may be stored as a solid and is shown to be competent in the oxidative chlorination of Au(I)-NHC complexes.
September 14, 2015: Dalton Transactions: An International Journal of Inorganic Chemistry
https://www.readbyqxmd.com/read/25314362/a-functional-selectivity-mechanism-at-the-serotonin-2a-gpcr-involves-ligand-dependent-conformations-of-intracellular-loop-2
#20
Jose Manuel Perez-Aguilar, Jufang Shan, Michael V LeVine, George Khelashvili, Harel Weinstein
With recent progress in determination of G protein-coupled receptor (GPCR) structure with crystallography, a variety of other experimental approaches (e.g., NMR spectroscopy, fluorescent-based assays, mass spectrometry techniques) are also being used to characterize state-specific and ligand-specific conformational states. MD simulations offer a powerful complementary approach to elucidate the dynamic features associated with ligand-specific GPCR conformations. To shed light on the conformational elements and dynamics of the important aspect of GPCR functional selectivity, we carried out unbiased microsecond-length MD simulations of the human serotonin 2A receptor (5-HT(2A)R) in the absence of ligand and bound to four distinct serotonergic agonists...
November 12, 2014: Journal of the American Chemical Society
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