keyword
MENU ▼
Read by QxMD icon Read
search

Stochastic modeling

keyword
https://www.readbyqxmd.com/read/28922380/the-warburg-effect-as-an-adaptation-of-cancer-cells-to-rapid-fluctuations-in-energy-demand
#1
Tamir Epstein, Robert A Gatenby, Joel S Brown
To maintain optimal fitness, a cell must balance the risk of inadequate energy reserve for response to a potentially fatal perturbation against the long-term cost of maintaining high concentrations of ATP to meet occasional spikes in demand. Here we apply a game theoretic approach to address the dynamics of energy production and expenditure in eukaryotic cells. Conventionally, glucose metabolism is viewed as a function of oxygen concentrations in which the more efficient oxidation of glucose to CO2 and H2O produces all or nearly all ATP except under hypoxic conditions when less efficient (2 ATP/ glucose vs...
2017: PloS One
https://www.readbyqxmd.com/read/28921997/simulating-drinking-in-social-networks-to-inform-alcohol-prevention-and-treatment-efforts
#2
Kevin A Hallgren, Barbara S McCrady, Thomas P Caudell, Katie Witkiewitz, J Scott Tonigan
Adolescent drinking influences, and is influenced by, peer alcohol use. Several efficacious adolescent alcohol interventions include elements aimed at reducing susceptibility to peer influence. Modeling these interventions within dynamically changing social networks may improve our understanding of how such interventions work and for whom they work best. We used stochastic actor-based models to simulate longitudinal drinking and friendship formation within social networks using parameters obtained from a meta-analysis of real-world 10th grade adolescent social networks...
September 18, 2017: Psychology of Addictive Behaviors: Journal of the Society of Psychologists in Addictive Behaviors
https://www.readbyqxmd.com/read/28920611/an-efficient-algorithm-for-extracting-the-magnitude-of-the-measurement-error-for-fractional-dynamics
#3
G Sikora, E Kepten, A Weron, M Balcerek, K Burnecki
Modern live-imaging fluorescent microscopy techniques following the stochastic motion of labeled tracer particles, i.e. single particle tracking (SPT) experiments, have uncovered significant deviations from the laws of Brownian motion in a variety of biological systems. Accurately characterizing the anomalous diffusion for SPT experiments has become a central issue in biophysics. However, measurement errors raise difficulty in the analysis of single trajectories. In this paper, we introduce a novel surface calibration method based on a fractionally integrated moving average (FIMA) process as an effective tool for extracting both the magnitude of the measurement error and the anomalous exponent for autocorrelated processes of various origins...
September 18, 2017: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/28919397/inferring-within-host-bottleneck-size-a-bayesian-approach
#4
R Dybowski, O Restif, D J Price, P Mastroeni
Recent technical developments in microbiology have led to new discoveries on the within-host dynamics of bacterial infections in laboratory animals. In particular, they have highlighted the importance of stochastic bottlenecks at the onset of invasive disease. A number of approaches exist for bottleneck-size estimation with respect to within-host bacterial infections; however, some are more appropriate than others under certain circumstances. A Bayesian comparison of several approaches is made in terms of the availability of isogenic multitype bacteria (e...
September 14, 2017: Journal of Theoretical Biology
https://www.readbyqxmd.com/read/28916757/muscle-pathology-from-stochastic-low-level-dux4-expression-in-an-fshd-mouse-model
#5
Darko Bosnakovski, Sunny S K Chan, Olivia O Recht, Lynn M Hartweck, Collin J Gustafson, Laura L Athman, Dawn A Lowe, Michael Kyba
Facioscapulohumeral muscular dystrophy is a slowly progressive but devastating myopathy caused by loss of repression of the transcription factor DUX4; however, DUX4 expression is very low, and protein has not been detected directly in patient biopsies. Efforts to model DUX4 myopathy in mice have foundered either in being too severe, or in lacking muscle phenotypes. Here we show that the endogenous facioscapulohumeral muscular dystrophy-specific DUX4 polyadenylation signal is surprisingly inefficient, and use this finding to develop an facioscapulohumeral muscular dystrophy mouse model with muscle-specific doxycycline-regulated DUX4 expression...
September 15, 2017: Nature Communications
https://www.readbyqxmd.com/read/28915892/modelling-the-impact-of-the-long-term-use-of-insecticide-treated-bed-nets-on-anopheles-mosquito-biting-time
#6
Claudia P Ferreira, Silas P Lyra, Franciane Azevedo, David Greenhalgh, Eduardo Massad
BACKGROUND: Evidence of changing in biting and resting behaviour of the main malaria vectors has been mounting up in recent years as a result of selective pressure by the widespread and long-term use of insecticide-treated bed nets (ITNs), and indoor residual spraying. The impact of resistance behaviour on malaria intervention efficacy has important implications for the epidemiology and malaria control programmes. In this context, a theoretical framework is presented to understand the mechanisms determining the evolution of feeding behaviour under the pressure of use of ITNs...
September 15, 2017: Malaria Journal
https://www.readbyqxmd.com/read/28914350/a-stochastic-model-for-speciation-by-mating-preferences
#7
Camille Coron, Manon Costa, Hélène Leman, Charline Smadi
Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial points of view, and differ only by their mating preference: two individuals with the same genotype have a higher probability to mate and produce a viable offspring. The population is subdivided in several patches and individuals may migrate between them. We show that mating preferences by themselves, even if they are very small, are enough to entail reproductive isolation between patches, and we provide the time needed for this isolation to occur as a function of the carrying capacity...
September 15, 2017: Journal of Mathematical Biology
https://www.readbyqxmd.com/read/28913925/a-cascade-of-destabilizations-combining-wolbachia-and-allee-effects-to-eradicate-insect-pests
#8
Julie C Blackwood, Roger Vargas, Xavier Fauvergue
1.The management of insect pests has long been dominated by the use of chemical insecticides, with the aim of instantaneously killing enough individuals to limit their damage. To minimize unwanted consequences, environmentally friendly approaches have been proposed that utilize biological control and take advantage of intrinsic demographic processes to reduce pest populations. 2.We address the feasibility of a novel pest management strategy based on the release of insects infected with Wolbachia, which causes cytoplasmic incompatibilities in its host population, into a population with a pre-existing Allee effect...
September 15, 2017: Journal of Animal Ecology
https://www.readbyqxmd.com/read/28913341/assessing-the-risk-of-a-canine-rabies-incursion-in-northern-australia
#9
Emily G Hudson, Victoria J Brookes, Michael P Ward
Rabies is a globally distributed virus that causes approximately 60,00 human deaths annually with >99% of cases caused by dog bites. Australia is currently canine rabies free. However, the recent eastward spread of rabies in the Indonesian archipelago has increased the probability of rabies entry into northern Australian communities. In addition, many northern Australian communities have large populations of free-roaming dogs, capable of maintaining rabies should an incursion occur. A risk assessment of rabies entry and transmission into these communities is needed to target control and surveillance measures...
2017: Frontiers in Veterinary Science
https://www.readbyqxmd.com/read/28912579/interference-exact-radiative-transfer-equation
#10
Mikko Partanen, Teppo Häyrynen, Jani Oksanen
The Purcell effect, i.e., the modification of the spontaneous emission rate by optical interference, profoundly affects the light-matter coupling in optical resonators. Fully describing the optical absorption, emission, and interference of light hence conventionally requires combining the full Maxwell's equations with stochastic or quantum optical source terms accounting for the quantum nature of light. We show that both the nonlocal wave and local particle features associated with interference and emission of propagating fields in stratified geometries can be fully captured by local damping and scattering coefficients derived from the recently introduced quantized fluctuational electrodynamics (QFED) framework...
September 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28911269/applicability-of-two-dimensional-surface-model-in-bacterial-biosorption-system-an-advanced-approach-in-bioremediation-of-metal-ions
#11
Vishal Mishra
The surface of Bacillus VMSDCM accession no. HQ108109 has been characterized at various pH values of the experimental solution. The boundary values of conditional parameter were used to develop a mathematical six lumped stochastic model for studying the surface chemistry of the bacterium cells. The results of the model were statistically analyzed to understand the strength of the proposed model. The simulation of the model was performed in Turbo C++ interface. The convergence values of the model were recorded and all the asymptotic points were neglected...
September 15, 2017: Environmental Technology
https://www.readbyqxmd.com/read/28910283/stochastic-principles-governing-alternative-splicing-of-rna
#12
Jianfei Hu, Eli Boritz, William Wylie, Daniel C Douek
The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the physical AS process and found that it can be modeled by a stochastic minimization process, which causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme value distribution. Surprisingly, we also found a simple equation to describe the median frequency of transcript isoforms of different dominance...
September 14, 2017: PLoS Computational Biology
https://www.readbyqxmd.com/read/28905916/hardware-efficient-variational-quantum-eigensolver-for-small-molecules-and-quantum-magnets
#13
Abhinav Kandala, Antonio Mezzacapo, Kristan Temme, Maika Takita, Markus Brink, Jerry M Chow, Jay M Gambetta
Quantum computers can be used to address electronic-structure problems and problems in materials science and condensed matter physics that can be formulated as interacting fermionic problems, problems which stretch the limits of existing high-performance computers. Finding exact solutions to such problems numerically has a computational cost that scales exponentially with the size of the system, and Monte Carlo methods are unsuitable owing to the fermionic sign problem. These limitations of classical computational methods have made solving even few-atom electronic-structure problems interesting for implementation using medium-sized quantum computers...
September 13, 2017: Nature
https://www.readbyqxmd.com/read/28903881/factors-affecting-the-cost-effectiveness-of-on-farm-culture-prior-to-the-treatment-of-clinical-mastitis-in-dairy-cows
#14
P M Down, A J Bradley, J E Breen, M J Green
The objective of this study was to use probabilistic sensitivity analysis to evaluate the cost-effectiveness of using an on-farm culture (OFC) approach to the treatment of clinical mastitis in dairy cows and compare this to a 'standard' treatment approach. A specific aim was to identify the herd circumstances under which an OFC approach would be most likely to be cost-effective. A stochastic Monte Carlo model was developed to simulate 5000 cases of clinical mastitis at the cow level and to calculate the associated costs simultaneously when treated according to 2 different treatment protocols; i) a 'conventional' approach (3 tubes of intramammary antibiotic) and ii) an OFC programme, whereby cows are treated according to the results of OFC...
September 15, 2017: Preventive Veterinary Medicine
https://www.readbyqxmd.com/read/28903875/risk-assessment-of-the-entry-of-canine-rabies-into-papua-new-guinea-via-sea-and-land-routes
#15
Victoria J Brookes, Andy Keponge-Yombo, David Thomson, Michael P Ward
Canine-rabies is endemic in parts of Indonesia and continues to spread eastwards through the Indonesian archipelago. Papua New Guinea (PNG) has a land border with Papua Province, Indonesia, as well as logging and fishing industry connections throughout Asia. PNG has a Human Development Index of 0.505; therefore, an incursion of canine-rabies could have devastating impacts on human (7.5 million) and animal populations. Given the known difficulties of rabies elimination in resource-scarce environments, an incursion of rabies into PNG would also likely compromise the campaign for global elimination of rabies...
September 15, 2017: Preventive Veterinary Medicine
https://www.readbyqxmd.com/read/28903865/economic-evaluation-of-the-eradication-program-for-bovine-viral-diarrhea-in-the-swiss-dairy-sector
#16
B Thomann, A Tschopp, I Magouras, M Meylan, G Schüpbach-Regula, B Häsler
Since 2008, the Swiss veterinary service has been running a mandatory eradication program for Bovine Viral Diarrhea (BVD) that is focused on detecting and eliminating persistently infected (PI) animals. Detection was initially based on antigen testing from ear tag samples of the entire cattle population, followed by antigen testing of all newborn calves until 2012. Since then, bulk milk serology (dairy herds) and blood sample serology (beef herds) have been used for the surveillance of disease-free herds. From 2008 to 2012, the proportion of newborn PI calves decreased from 1...
September 15, 2017: Preventive Veterinary Medicine
https://www.readbyqxmd.com/read/28903749/modelling-the-effects-of-booster-dose-vaccination-schedules-and-recommendations-for-public-health-immunization-programs-the-case-of-haemophilus-influenzae-serotype-b
#17
Nadia A Charania, Seyed M Moghadas
BACKGROUND: Haemophilus influenzae serotype b (Hib) has yet to be eliminated despite the implementation of routine infant immunization programs. There is no consensus regarding the number of primary vaccine doses and an optimal schedule for the booster dose. We sought to evaluate the effect of a booster dose after receiving the primary series on the long-term disease incidence. METHODS: A stochastic model of Hib transmission dynamics was constructed to compare the long-term impact of a booster vaccination and different booster schedules after receiving the primary series on the incidence of carriage and symptomatic disease...
September 13, 2017: BMC Public Health
https://www.readbyqxmd.com/read/28900922/tissue-specificity-the-role-of-organellar-membrane-nanojunctions-in-smooth-muscle-ca-2-signaling
#18
Nicola Fameli, A Mark Evans, Cornelis van Breemen
In this chapter we examine the importance of cytoplasmic nanojunctions-nanometer scale appositions between organellar membranes including the molecular transporters therein-to the cell signaling machinery, with specific reference to Ca(2+) transport and signaling in vascular smooth muscle and endothelial cells. More specifically, we will consider the extent to which quantitative modeling may aid in the development of our understanding of these processes. Testament to the requirement for such approaches lies in the fact that recent studies have provided evermore convincing evidence in support of the view that cytoplasmic nanospaces may be as significant to the process of Ca(2+) signaling as the Ca(2+) transporters, release channels, and Ca(2+)-storing organelles themselves...
2017: Advances in Experimental Medicine and Biology
https://www.readbyqxmd.com/read/28900751/effect-of-wavelength-and-beam-width-on-penetration-in-light-tissue-interaction-using-computational-methods
#19
Caerwyn Ash, Michael Dubec, Kelvin Donne, Tim Bashford
Penetration depth of ultraviolet, visible light and infrared radiation in biological tissue has not previously been adequately measured. Risk assessment of typical intense pulsed light and laser intensities, spectral characteristics and the subsequent chemical, physiological and psychological effects of such outputs on vital organs as consequence of inappropriate output use are examined. This technical note focuses on wavelength, illumination geometry and skin tone and their effect on the energy density (fluence) distribution within tissue...
September 12, 2017: Lasers in Medical Science
https://www.readbyqxmd.com/read/28900224/magnetoelectric-oxide-based-stochastic-spin-device-towards-solving-combinatorial-optimization-problems
#20
Saima Sharmin, Yong Shim, Kaushik Roy
Solving combinatorial optimization problems is challenging. Mapping onto the ground-state search problem of the Ising Hamiltonian is a promising approach in this field, where the components of the optimization set are modeled as artificial spin units. The search for a suitable physical system to realize these spin units is an active area of research. In this work, we have demonstrated a scheme to model the Ising Hamiltonian with multiferroic oxide/nanomagnet units. Although nanomagnet-based implementation has been shown before, we have utilized the magnetoelectric effect of the multiferroics to make voltagecontrolled spin units with less current flow in the network...
September 12, 2017: Scientific Reports
keyword
keyword
115013
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"