keyword
https://read.qxmd.com/read/38601600/from-genes-to-ecosystems-decoding-plant-tolerance-mechanisms-to-arsenic-stress
#1
REVIEW
Celeste Gracia-Rodriguez, Carlos Lopez-Ortiz, Gerardo Flores-Iga, Lizbeth Ibarra-Muñoz, Padma Nimmakayala, Umesh K Reddy, Nagamani Balagurusamy
Arsenic (As), a metalloid of considerable toxicity, has become increasingly bioavailable through anthropogenic activities, raising As contamination levels in groundwater and agricultural soils worldwide. This bioavailability has profound implications for plant biology and farming systems. As can detrimentally affect crop yield and pose risks of bioaccumulation and subsequent entry into the food chain. Upon exposure to As, plants initiate a multifaceted molecular response involving crucial signaling pathways, such as those mediated by calcium, mitogen-activated protein kinases, and various phytohormones (e...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38565306/strigolactones-alleviate-alcl-3-stress-by-vacuolar-compartmentalization-and-cell-wall-blocking-in-apple
#2
JOURNAL ARTICLE
Yong Zhang, Jianyu Li, Kexin Guo, Tianchao Wang, Lijie Gao, Zhijuan Sun, Changqing Ma, Caihong Wang, Yike Tian, Xiaodong Zheng
Poor management and excess fertilization of apple (Malus domestica Borkh.) orchards are causing increasingly serious soil acidification, resulting in Al toxicity and direct poisoning of roots. Strigolactones (SLs) are reported to be involved in plant responses to abiotic stress, but their role and mechanism under AlCl3 stress remain unknown. Here, we found that applying 1 μm GR24 (an SL analoge) significantly alleviated AlCl3 stress of M26 apple rootstock, mainly by blocking the movement of Al through cell wall and by vacuolar compartmentalization of Al...
April 2, 2024: Plant Journal
https://read.qxmd.com/read/38557611/mgfmirnaloc-predicting-mirna-subcellular-localization-using-molecular-graph-feature-and-convolutional-block-attention-module
#3
JOURNAL ARTICLE
Ying Liang, Xiya You, Zequn Zhang, Shi Qiu, Suhui Li, Lianlian Fu
MiRNA has distinct physiological functions at various cellular locations. However, few effective computational methods for predicting the subcellular location of miRNA exist, thereby leaving considerable room for improvement. Accordingly, our study proposes the MGFmiRNAloc simplified molecular input line entry system (SMILES) format as a new approach for predicting the subcellular localization of miRNA. Additionally, the graphical convolutional network (GCN) technique was employed to extract the atomic nodes and topological structure of a single base, thereby constructing RNA sequence molecular map features...
April 1, 2024: IEEE/ACM Transactions on Computational Biology and Bioinformatics
https://read.qxmd.com/read/38551589/patient-out-of-pocket-costs-for-biologic-drugs-after-biosimilar-competition
#4
JOURNAL ARTICLE
Kimberly Feng, Massimiliano Russo, Luca Maini, Aaron S Kesselheim, Benjamin N Rome
IMPORTANCE: Biologic drugs account for a growing share of US pharmaceutical spending. Competition from follow-on biosimilar products (subsequent versions that have no clinically meaningful differences from the original biologic) has led to modest reductions in US health care spending, but these savings may not translate to lower out-of-pocket (OOP) costs for patients. OBJECTIVE: To investigate whether biosimilar competition is associated with lower OOP spending for patients using biologics...
March 1, 2024: JAMA health forum
https://read.qxmd.com/read/38543079/trpv4-activation-during-guinea-pig-airway-smooth-muscle-contraction-promotes-ca-2-and-na-influx
#5
JOURNAL ARTICLE
Luis M Montaño, Abril Carbajal-García, María F Casas-Hernández, David Arredondo-Zamarripa, Jorge Reyes-García
Airway smooth muscle (ASM) contraction is determined by the increase in intracellular Ca2+ concentration ([Ca2+ ]i ) caused by its release from the sarcoplasmic reticulum (SR) or by extracellular Ca2+ influx. Major channels involved in Ca2+ influx in ASM cells are L-type voltage-dependent Ca2+ channels (L-VDCCs) and nonselective cation channels (NSCCs). Transient receptor potential vanilloid 4 (TRPV4) is an NSCC recently studied in ASM. Mechanical stimuli, such as contraction, can activate TRPV4. We investigated the possible activation of TRPV4 by histamine (His)- or carbachol (CCh)-induced contraction in guinea pig ASM...
February 24, 2024: Pharmaceuticals
https://read.qxmd.com/read/38524870/tibial-cortex-transverse-transport-regulates-orai1-stim1-mediated-no-release-and-improve-the-migration-and-proliferation-of-vessels-via-increasing-osteopontin-expression
#6
JOURNAL ARTICLE
Lingchao Kong, Yangyang Li, Zhongfang Deng, Xiaoyu Chen, Yin Xia, Bing Shen, Rende Ning, Lesha Zhang, Zongsheng Yin
BACKGROUND: Diabetic foot is a major complication of diabetes. The bone transverse transport method could be applied in clinics for treatment, which could improve the metabolism of the tissues via lasting distraction forces. However, the process' specific regulating mechanism is still unknown. METHODS: Based on the notion that the healing of bones involves the recruitment of calcium ions, in this study, we established the model of tibial cortex transverse transport (TTT) on rats and then used tissue immunologic detection, such as the double fluorescent staining to explore the expression of the calcium channels' calcium release-activated calcium modulator 1 (Orai1)/stromal interaction molecule 1 (STIM1), which belong to the store-operated calcium entry (SOCE) signaling pathways on the tissues around the bone transport area...
March 2024: Journal of Orthopaedic Translation
https://read.qxmd.com/read/38514841/ace2-dependent-and-independent-sars-cov-2-entries-dictate-viral-replication-and-inflammatory-response-during-infection
#7
JOURNAL ARTICLE
Tianhao Duan, Changsheng Xing, Junjun Chu, Xiangxue Deng, Yang Du, Xin Liu, Yuzhou Hu, Chen Qian, Bingnan Yin, Helen Y Wang, Rong-Fu Wang
Excessive inflammation is the primary cause of mortality in patients with severe COVID-19, yet the underlying mechanisms remain poorly understood. Our study reveals that ACE2-dependent and -independent entries of SARS-CoV-2 in epithelial cells versus myeloid cells dictate viral replication and inflammatory responses. Mechanistically, SARS-CoV-2 NSP14 potently enhances NF-κB signalling by promoting IKK phosphorylation, while SARS-CoV-2 ORF6 exerts an opposing effect. In epithelial cells, ACE2-dependent SARS-CoV-2 entry enables viral replication, with translated ORF6 suppressing NF-κB signalling...
March 21, 2024: Nature Cell Biology
https://read.qxmd.com/read/38478523/spatial-resolution-of-hiv-1-post-entry-steps-in-resting-cd4-t%C3%A2-cells
#8
JOURNAL ARTICLE
Swetha Ananth, Ina Ambiel, Sandra Schifferdecker, Thorsten G Müller, Paul R Wratil, Ernesto Mejias-Perez, Hans-Georg Kräusslich, Barbara Müller, Oliver T Keppler, Oliver T Fackler
Resting CD4 T cells resist productive HIV-1 infection. The HIV-2/simian immunodeficiency virus protein viral accessory protein X (Vpx) renders these cells permissive to infection, presumably by alleviating blocks at cytoplasmic reverse transcription and subsequent nuclear import of reverse-transcription/pre-integration complexes (RTC/PICs). Here, spatial analyses using quantitative virus imaging techniques reveal that HIV-1 capsids containing RTC/PICs are readily imported into the nucleus, recruit the host dependency factor CPSF6, and translocate to nuclear speckles in resting CD4 T cells...
March 12, 2024: Cell Reports
https://read.qxmd.com/read/38474014/targeting-atr-pathway-in-solid-tumors-evidence-of-improving-therapeutic-outcomes
#9
REVIEW
Dimitra Mavroeidi, Anastasia Georganta, Emmanouil Panagiotou, Konstantinos Syrigos, Vassilis L Souliotis
The DNA damage response (DDR) system is a complicated network of signaling pathways that detects and repairs DNA damage or induces apoptosis. Critical regulators of the DDR network include the DNA damage kinases ataxia telangiectasia mutated Rad3-related kinase (ATR) and ataxia-telangiectasia mutated (ATM). The ATR pathway coordinates processes such as replication stress response, stabilization of replication forks, cell cycle arrest, and DNA repair. ATR inhibition disrupts these functions, causing a reduction of DNA repair, accumulation of DNA damage, replication fork collapse, inappropriate mitotic entry, and mitotic catastrophe...
February 27, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38467094/transcriptome-analysis-of-the-synergistic-mechanisms-between-two-strains-of-potato-virus-y-in-solanum-tuberosum-l
#10
JOURNAL ARTICLE
Liping Xu, Wei Zhang, Shangwu Liu, Yanling Gao, Yuanju Huang, Xianzhou Nie, Yanju Bai
Many viruses employ a process known as superinfection exclusion (SIE) to block subsequent entry or replication of the same or closely related viruses in the cells they occupy. SIE is also referred to as Cross-protection refers to the situation where a host plant infected by a mild strain of a virus or viroid gains immunity against a more severe strain closely related to the initial infectant. The mechanisms underlying cross-protection are not fully understood. In this study, we performed a comparative transcriptomic analysis of potato (Solanum tuberosum L...
March 6, 2024: Virology
https://read.qxmd.com/read/38453961/comprehensive-multi-omics-analysis-reveals-wee1-as-a-synergistic-lethal-target-with-hyperthermia-through-cdk1-super-activation
#11
JOURNAL ARTICLE
Xiaohang Yang, Xingyuan Hu, Jingjing Yin, Wenting Li, Yu Fu, Bin Yang, Junpeng Fan, Funian Lu, Tianyu Qin, Xiaoyan Kang, Xucui Zhuang, Fuxia Li, Rourou Xiao, Tingyan Shi, Kun Song, Jing Li, Gang Chen, Chaoyang Sun
Hyperthermic intraperitoneal chemotherapy's role in ovarian cancer remains controversial, hindered by limited understanding of hyperthermia-induced tumor cellular changes. This limits developing potent combinatory strategies anchored in hyperthermic intraperitoneal therapy (HIPET). Here, we perform a comprehensive multi-omics study on ovarian cancer cells under hyperthermia, unveiling a distinct molecular panorama, primarily characterized by rapid protein phosphorylation changes. Based on the phospho-signature, we pinpoint CDK1 kinase is hyperactivated during hyperthermia, influencing the global signaling landscape...
March 7, 2024: Nature Communications
https://read.qxmd.com/read/38417382/the-discovery-of-inhibitors-of-the-sars-cov-2-s-protein-through-computational-drug-repurposing
#12
JOURNAL ARTICLE
Ana Isabel Avilés-Alía, Joao Zulaica, Juan J Perez, Jaime Rubio-Martínez, Ron Geller, José M Granadino-Roldán
SARS-CoV-2 must bind its principal receptor, ACE2, on the target cell to initiate infection. This interaction is largely driven by the receptor binding domain (RBD) of the viral Spike (S) protein. Accordingly, antiviral compounds that can block RBD/ACE2 interactions can constitute promising antiviral agents. To identify such molecules, we performed a virtual screening of the Selleck FDA approved drugs and the Selleck database of Natural Products using a multistep computational procedure. An initial set of candidates was identified from an ensemble docking process using representative structures determined from the analysis of four 3 μ s molecular dynamics trajectories of the RBD/ACE2 complex...
February 14, 2024: Computers in Biology and Medicine
https://read.qxmd.com/read/38396738/hydroxypropyl-beta-cyclodextrin-barrier-prevents-respiratory-viral-infections-a-preclinical-study
#13
JOURNAL ARTICLE
Angela Lu, Brandon Ebright, Aditya Naik, Hui L Tan, Noam A Cohen, Jean-Marie C Bouteiller, Gianluca Lazzi, Stan G Louie, Mark S Humayun, Isaac Asante
The emergence and mutation of pathogenic viruses have been occurring at an unprecedented rate in recent decades. The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has developed into a global public health crisis due to extensive viral transmission. In situ RNA mapping has revealed angiotensin-converting enzyme 2 (ACE2) expression to be highest in the nose and lower in the lung, pointing to nasal susceptibility as a predominant route for infection and the cause of subsequent pulmonary effects...
February 8, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38389573/mitochondrial-related-hub-genes-in-dermatomyositis-muscle-and-skin-datasets-based-identification-and-in-vivo-validation
#14
JOURNAL ARTICLE
Shuo Wang, Yiping Tang, Xixi Chen, Siyuan Song, Xi Chen, Qiao Zhou, Li Zeng
Background: Mitochondrial dysfunction has been implicated in the pathogenesis of dermatomyositis (DM), a rare autoimmune disease affecting the skin and muscles. However, the genetic basis underlying dysfunctional mitochondria and the development of DM remains incomplete. Methods: The datasets of DM muscle and skin tissues were retrieved from the Gene Expression Omnibus database. The mitochondrial related genes (MRGs) were retrieved from MitoCarta. DM-related modules in muscle and skin tissues were identified with the analysis of weighted gene co-expression network (WGCNA), and then compared with the MRGs to obtain the overlapping mitochondrial related module genes (mito-MGs)...
2024: Frontiers in Genetics
https://read.qxmd.com/read/38379785/organic-crystal-structure-prediction-via-coupled-generative-adversarial-networks-and-graph-convolutional-networks
#15
JOURNAL ARTICLE
Zhuyifan Ye, Nannan Wang, Jiantao Zhou, Defang Ouyang
Organic crystal structures exert a profound impact on the physicochemical properties and biological effects of organic compounds. Quantum mechanics (QM)-based crystal structure predictions (CSPs) have somewhat alleviated the dilemma that experimental crystal structure investigations struggle to conduct complete polymorphism studies, but the high computing cost poses a challenge to its widespread application. The present study aims to construct DeepCSP, a feasible pure machine learning framework for minute-scale rapid organic CSP...
March 4, 2024: The innovation
https://read.qxmd.com/read/38378890/increases-in-cyclin-a-cdk-activity-and-in-pp2a-b55-inhibition-by-fam122a-are-key-mitosis-inducing-events
#16
JOURNAL ARTICLE
Benjamin Lacroix, Suzanne Vigneron, Jean Claude Labbé, Lionel Pintard, Corinne Lionne, Gilles Labesse, Anna Castro, Thierry Lorca
Entry into mitosis has been classically attributed to the activation of a cyclin B/Cdk1 amplification loop via a partial pool of this kinase becoming active at the end of G2 phase. However, how this initial pool is activated is still unknown. Here we discovered a new role of the recently identified PP2A-B55 inhibitor FAM122A in triggering mitotic entry. Accordingly, depletion of the orthologue of FAM122A in C. elegans prevents entry into mitosis in germline stem cells. Moreover, data from Xenopus egg extracts strongly suggest that FAM122A-dependent inhibition of PP2A-B55 could be the initial event promoting mitotic entry...
February 20, 2024: EMBO Journal
https://read.qxmd.com/read/38377825/design-synthesis-and-biological-evaluation-of-novel-1-2-4a-5-tetrahydro-4h-benzo-b-1-4-oxazino-4-3-d-1-4-oxazine-based-aak1-inhibitors-with-anti-viral-property-against-sars-cov-2
#17
JOURNAL ARTICLE
Nian-Dong Mao, Yueying Xu, Hao Che, Xia Yao, Yuan Gao, Chenchen Wang, Haowen Deng, Zi Hui, Hang Zhang, Xiang-Yang Ye
Coronavirus entry into host cells hinges on the interaction between the spike glycoprotein of the virus and the cell-surface receptor angiotensin-converting enzyme 2 (ACE2), initiating the subsequent clathrin-mediated endocytosis (CME) pathway. AP-2-associated protein kinase 1 (AAK1) holds a pivotal role in this pathway, regulating CME by modulating the phosphorylation of the μ subunit of adaptor protein 2 (AP2M1). Herein, we report a series of novel AAK1 inhibitors based on previously reported 1,2,4a,5-tetrahydro-4H-benzo[b] [1,4]oxazino[4,3-d] [1,4]oxazine scaffold...
February 12, 2024: European Journal of Medicinal Chemistry
https://read.qxmd.com/read/38368366/interferon-stimulated-gene-pvrl4-broadly-suppresses-viral-entry-by-inhibiting-viral-cellular-membrane-fusion
#18
JOURNAL ARTICLE
Qiaomei Cai, Nina Sun, Yurui Zhang, Jingfeng Wang, Chaohu Pan, Yu Chen, Lili Li, Xiaorong Li, Wancheng Liu, Saba R Aliyari, Heng Yang, Genhong Cheng
BACKGROUND: Viral infection elicits the type I interferon (IFN-I) response in host cells and subsequently inhibits viral infection through inducing hundreds of IFN-stimulated genes (ISGs) that counteract many steps in the virus life cycle. However, most of ISGs have unclear functions and mechanisms in viral infection. Thus, more work is required to elucidate the role and mechanisms of individual ISGs against different types of viruses. RESULTS: Herein, we demonstrate that poliovirus receptor-like protein4 (PVRL4) is an ISG strongly induced by IFN-I stimulation and various viral infections...
February 17, 2024: Cell & Bioscience
https://read.qxmd.com/read/38310198/comprehensive-analysis-and-experimental-validation-of-the-parkinson-s-disease-lysosomal-gene-acp2-and-pan-cancer
#19
JOURNAL ARTICLE
Yu Liang, Guangshang Zhong, Yangyang Li, Mingxin Ren, Ao Wang, Mengjiao Ying, Changqing Liu, Yu Guo, Ding Zhang
The pivotal role of lysosomal function in preserving neuronal homeostasis is recognized, with its dysfunction being implicated in neurodegenerative processes, notably in Parkinson's disease (PD). Yet, the molecular underpinnings of lysosome-related genes (LRGs) in the context of PD remain partially elucidated. We collected RNA-seq data from the brain substantia nigra of 30 PD patients and 20 normal subjects from the GEO database. We obtained molecular classification clusters from the screened lysosomal expression patterns...
February 3, 2024: Biochemical Genetics
https://read.qxmd.com/read/38307332/benzopyrene-elimination-from-the-environment-using-graphitic-carbon-nitride-sns-nanocomposites
#20
JOURNAL ARTICLE
Devaraj Bharathi, Jintae Lee, Yamini Vinayagam, Manosi Banerjee, Gnanasambandan Ramanathan, Mysoon M Al-Ansari, Ganesh Venkatraman, Devi Rajeswari V
Benzopyrene (BaP) stands as a potent polycyclic aromatic hydrocarbon (PAH) molecule, boasting five fused aromatic rings, making its way into the human food chain through soil contamination. The persistent environmental presence of PAHs in soil, attributed to industrial exposure, is primarily due to their low molecular weight and hydrophobic nature. To preemptively address the entry of BaP into the food chain, the application of nanocomposites was identified as an effective remediation strategy. Post-synthesis, comprehensive characterization tests employing techniques such as UV-DRS, XRD, SEM-EDX, FTIR, and DLS unveiled the distinctive features of the g-C3 N4 -SnS nanocomposites...
January 31, 2024: Chemosphere
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