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Transfer entropy

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https://www.readbyqxmd.com/read/28430108/a-network-physiology-approach-to-the-assessment-of-the-link-between-sinoatrial-and-ventricular-cardiac-controls
#1
Alberto Porta, Vlasta Bari, Beatrice De Maria, Mathias Baumert
A network physiology approach to evaluate the strength of the directed interactions among cardiac controls at sinoatrial and ventricular levels and respiration (R) is proposed. The network is composed of three nodes (i.e. sinoatrial and ventricular cardiac controls and R) and their activity is exemplified by the variability of heart period (HP), the variability of the duration of the electrical activity of the heart approximated as the temporal distance between Q-wave onset and T-wave end or apex (i.e. QTe or QTa) and thoracic movements respectively...
April 21, 2017: Physiological Measurement
https://www.readbyqxmd.com/read/28415203/transfer-entropy-in-continuous-time-with-applications-to-jump-and-neural-spiking-processes
#2
Richard E Spinney, Mikhail Prokopenko, Joseph T Lizier
Transfer entropy has been used to quantify the directed flow of information between source and target variables in many complex systems. While transfer entropy was originally formulated in discrete time, in this paper we provide a framework for considering transfer entropy in continuous time systems, based on Radon-Nikodym derivatives between measures of complete path realizations. To describe the information dynamics of individual path realizations, we introduce the pathwise transfer entropy, the expectation of which is the transfer entropy accumulated over a finite time interval...
March 2017: Physical Review. E
https://www.readbyqxmd.com/read/28402867/functional-connectivity-and-network-analysis-during-hypoactive-delirium-and-recovery-from-anesthesia
#3
Tianne Numan, Arjen J C Slooter, Arendina W van der Kooi, Annemieke M L Hoekman, Willem J L Suyker, Cornelis J Stam, Edwin van Dellen
OBJECTIVE: To gain insight in the underlying mechanism of reduced levels of consciousness due to hypoactive delirium versus recovery from anesthesia, we studied functional connectivity and network topology using electroencephalography (EEG). METHODS: EEG recordings were performed in age and sex-matched patients with hypoactive delirium (n=18), patients recovering from anesthesia (n=20), and non-delirious control patients (n=20), all after cardiac surgery. Functional and directed connectivity were studied with phase lag index and directed phase transfer entropy...
March 6, 2017: Clinical Neurophysiology: Official Journal of the International Federation of Clinical Neurophysiology
https://www.readbyqxmd.com/read/28401525/new-world-tryptamine-hallucinogens-and-the-neuroscience-of-ayahuasca
#4
Dennis McKenna, Jordi Riba
New World indigenous peoples are noted for their sophisticated use of psychedelic plants in shamanic and ethnomedical practices. The use of psychedelic plant preparations among New World tribes is far more prevalent than in the Old World. Yet, although these preparations are botanically diverse, almost all are chemically similar in that their active principles are tryptamine derivatives, either DMT or related constituents. Part 1 of this paper provides an ethnopharmacological overview of the major tryptamine-containing New World hallucinogens...
April 2, 2017: Current Topics in Behavioral Neurosciences
https://www.readbyqxmd.com/read/28392760/accelerated-recovery-of-consciousness-after-general-anesthesia-is-associated-with-increased-functional-brain-connectivity-in-the-high-gamma-bandwidth
#5
Duan Li, Viviane S Hambrecht-Wiedbusch, George A Mashour
Recent data from our laboratory demonstrate that high-frequency gamma connectivity across the cortex is present during consciousness and depressed during unconsciousness. However, these data were derived from static and well-defined states of arousal rather than during transitions that would suggest functional relevance. We also recently found that subanesthetic ketamine administered during isoflurane anesthesia accelerates recovery upon discontinuation of the primary anesthetic and increases gamma power during emergence...
2017: Frontiers in Systems Neuroscience
https://www.readbyqxmd.com/read/28378705/comparison-of-connectivity-analyses-for-resting-state-eeg-data
#6
Elzbieta Olejarczyk, Laura Marzetti, Vittorio Pizzella, Filippo Zappasodi
OBJECTIVE: In the present work, a nonlinear measure (transfer entropy, TE) was used in a multivariate approach for the analysis of effective connectivity in high density resting state EEG data in eyes open and eyes closed. Advantages of the multivariate approach in comparison to the bivariate one were tested. Moreover, the multivariate TE was compared to an effective linear measure, i.e. directed transfer function (DTF). Finally, the existence of a relationship between the information transfer and the level of brain synchronization as measured by phase synchronization value (PLV) was investigated...
April 5, 2017: Journal of Neural Engineering
https://www.readbyqxmd.com/read/28372376/a-versatile-approach-to-vacuum-injection-casting-for-materials-research-and-development
#7
Donghua Xu, Yifan Xu
Vacuum injection casting (VIC) is important for research and development (R&D) of materials that are prone to oxidation at high temperatures, particularly metals and metallic alloys (e.g., metallic glasses and high entropy alloys). VIC in R&D laboratories often involves initial melting/alloying in a prior step, transporting the sample to a dedicated vacuum chamber, re-melting the sample in a quartz tube, and finally injecting the melt with an inert gas to a dedicated mold. Here we present a new approach to laboratory VIC that requires no sample transfer (for a variety of materials), no dedicated vacuum chamber/space nor dedicated mold, and hence provides more versatility and higher efficiency and yet lowers the capital equipment cost...
March 2017: Review of Scientific Instruments
https://www.readbyqxmd.com/read/28372065/end-correction-model-for-the-transfer-impedance-of-microperforated-panels-using-viscothermal-wave-theory
#8
Xianhui Li
Microperforated panels (MPPs) are efficient sound absorbers featuring microperforations with low porosity. Sound absorption occurs inside the perforations and their vicinity as well, which is represented with an end correction in the transfer impedance of the MPPs. Many empirical models for the end correction were derived from experiment or numerical simulation data. In order to validate these models, this paper presents an analytical solution of the end correction for sharp-edged circular perforations using viscothermal wave theory...
March 2017: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/28365435/a-dft-b3lyp-study-of-the-mechanisms-of-the-o2-formation-reaction-catalyzed-by-the-terpy-h2o-mn-iii-o-2mn-iv-oh2-terpy-no3-3-complex-a-paradigm-for-photosystem-ii
#9
Eduardo M Sproviero
We present a theoretical study of the reaction pathway for dioxygen molecular formation catalyzed by the [(terpy)(H2O)Mn(III)(O)2Mn(IV)(OH2) (terpy)](NO3)3 (terpy=2,2':6',2″-terpyridine) complex based on DFT-B3LYP calculations. In the initial state of the reaction, a partial oxido radical (0.44 spins) is formed ligated to Mn. This radical is involved in a nucleophylic attack by bulk water in the OO bond reaction formation step, in which the oxido fractional unpaired electron is delocalized toward the outermost Mn of the μ-oxo bridge, instead of the ligated Mn center...
February 20, 2017: Journal of Inorganic Biochemistry
https://www.readbyqxmd.com/read/28358850/adaptive-feature-selection-using-v-shaped-binary-particle-swarm-optimization
#10
Xuyang Teng, Hongbin Dong, Xiurong Zhou
Feature selection is an important preprocessing method in machine learning and data mining. This process can be used not only to reduce the amount of data to be analyzed but also to build models with stronger interpretability based on fewer features. Traditional feature selection methods evaluate the dependency and redundancy of features separately, which leads to a lack of measurement of their combined effect. Moreover, a greedy search considers only the optimization of the current round and thus cannot be a global search...
2017: PloS One
https://www.readbyqxmd.com/read/28355158/study-on-the-interaction-of-6-2-morpholin-4-yl-ethyl-6h-indolo-2-3-b-quinoxaline-hydrochloride-with-human-serum-albumin-by-fluorescence-spectroscopy
#11
A Yegorova, I Leonenko, Yu Scrypynets, G Maltsev, V Antonovich
Under physiological conditions, in vitro interaction between the bio-active substance 6-(2-morpholin-4-yl-ethyl)-6H-indolo[2,3-b]quinoxaline hydrochloride (MIQ) and human serum albumin (HSA) was investigated at an excitation wavelength 260 nm and at different temperatures (298 K, 308 K and 313 K) by fluorescence emission spectroscopy. From spectral analysis, MIQ showed a strong ability to quench the intrinsic fluorescence of HSA through a static quenching procedure. The binding constant is estimated asK A   =  2...
September 14, 2016: Methods and Applications in Fluorescence
https://www.readbyqxmd.com/read/28327718/can-charged-colloidal-particles-increase-the-thermoelectric-energy-conversion-efficiency
#12
Thomas J Salez, Bo Tao Huang, Maud Rietjens, Marco Bonetti, Cécile Wiertel-Gasquet, Michel Roger, Cleber Lopes Filomeno, Emmanuelle Dubois, Régine Perzynski, Sawako Nakamae
Currently, liquid thermocells are receiving increasing attention as an inexpensive alternative to conventional solid-state thermoelectrics for low-grade waste heat recovery applications. Here we present a novel path to increase the Seebeck coefficient of liquid thermoelectric materials using charged colloidal suspensions; namely, ionically stabilized magnetic nanoparticles (ferrofluids) dispersed in aqueous potassium ferro-/ferri-cyanide electrolytes. The dependency of thermoelectric potential on experimental parameters such as nanoparticle concentration and types of solute ions (lithium citrate and tetrabutylammonium citrate) is examined to reveal the relative contributions from the thermogalvanic potential of redox couples and the entropy of transfer of nanoparticles and ions...
March 22, 2017: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/28289373/reentrant-information-flow-in-electrophysiological-rat-default-mode-network
#13
Wei Jing, Daqing Guo, Yunxiang Zhang, Fengru Guo, Pedro A Valdés-Sosa, Yang Xia, Dezhong Yao
Functional MRI (fMRI) studies have demonstrated that the rodent brain shows a default mode network (DMN) activity similar to that in humans, offering a potential preclinical model both for physiological and pathophysiological studies. However, the neuronal mechanism underlying rodent DMN remains poorly understood. Here, we used electrophysiological data to analyze the power spectrum and estimate the directed phase transfer entropy (dPTE) within rat DMN across three vigilance states: wakeful rest (WR), slow-wave sleep (SWS), and rapid-eye-movement sleep (REMS)...
2017: Frontiers in Neuroscience
https://www.readbyqxmd.com/read/28289188/ligand-induced-allostery-in-the-interaction-of-the-pseudomonas-aeruginosa-heme-binding-protein-with-heme-oxygenase
#14
Daniel J Deredge, Weiliang Huang, Colleen Hui, Hirotoshi Matsumura, Zhi Yue, Pierre Moënne-Loccoz, Jana Shen, Patrick L Wintrode, Angela Wilks
A heme-dependent conformational rearrangement of the C-terminal domain of heme binding protein (PhuS) is required for interaction with the iron-regulated heme oxygenase (HemO). Herein, we further investigate the underlying mechanism of this conformational rearrangement and its implications for heme transfer via site-directed mutagenesis, resonance Raman (RR), hydrogen-deuterium exchange MS (HDX-MS) methods, and molecular dynamics (MD). HDX-MS revealed that the apo-PhuS C-terminal α6/α7/α8-helices are largely unstructured, whereas the apo-PhuS H212R variant showed an increase in structure within these regions...
March 28, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28269698/localizing-seizure-onset-zone-by-convolutional-transfer-entropy-from-ieeg
#15
Kang Lin, Yueming Wang, Kedi Xu, Junming Zhu, Jianmin Zhang, Xiaoxiang Zheng
Automatic localization of the seizure onset zone (SOZ) is able to output an objective result and help clinical doctors greatly in epilepsy therapy. Transfer entropy is one of the most frequently used measures based on information theory to localize the SOZ. However, if only using transfer entropy to localize the SOZ, different results can be obtained during different periods, thus humans still need to identify which one is most reasonable. This paper proposes a new method to output only a few (e.g. 1 or 2) results along a long time slot...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28269504/synchronization-of-brain-activity-during-induction-of-propofol-anesthesia-comparison-of-methods
#16
Tarmo Lipping, Jaanika Saareleht, Elzbieta Olejarczyk, Eila Sonkajarvi, Tuomo Ylinen, Ville Jantti
Synchrony patterns between the EEG measured from the subthalamic nucleus and scalp are analyzed during induction of propofol anesthesia. Various methods such as Coherence, Phase Locking Value, Partial Directed Coherence, Mutual Information, and Transfer Entropy are applied. The results indicate that, in general, the synchrony patterns seen in the depth-scalp electrode pair are similar to those seen between two scalp electrodes of opposite hemispheres. A clear change of state is revealed at about 10 minutes before burst suppression; this event is revealed by linear (Coherence) as well as nonlinear (Phase Locking Value) and information theoretic (Mutual Information and Transfer Entropy) measures...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28269284/cross-frequency-information-transfer-from-eeg-to-emg-in-grasping
#17
Winnie K Y So, Lingling Yang, Beth Jelfs, Qi She, Savio W H Wong, Joseph N Mak, Rosa H M Chan
This paper presents an investigation into the cortico-muscular relationship during a grasping task by evaluating the information transfer between EEG and EMG signals. Information transfer was computed via a non-linear model-free measure, transfer entropy (TE). To examine the cross-frequency interaction, TEs were computed after the times series were decomposed into various frequency ranges via wavelet transform. Our results demonstrate the capability of TE to capture the direct interaction between EEG and EMG...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28268929/cardiovascular-interactions-assessed-via-conditional-joint-transfer-entropy-in-patients-developing-atrial-fibrillation-after-coronary-artery-bypass-graft-surgery
#18
Vlasta Bari, Marco Ranucci, Andrea Marchi, Beatrice De Maria, Valeria Pistuddi, Alberto Porta
Assigned the universe of knowledge Ω as composed by one target and two exogenous signals, the conditional joint transfer entropy (CJTE), assessing the amount of information jointly transferred from the two sources to the target that can be uniquely linked to one of the two sources, was found useful to study cardiovascular control. We propose the assessment of CJTE from systolic arterial pressure (SAP) and respiration (R) to heart period (HP) conditioned on R (CJTESAP, R→HP|R) along the baroreflex, and from HP and R to SAP conditioned on R (CJTEHP, R→SAP|R) along the feedforward mechanical pathway, in 134 patients undergoing coronary artery bypass graft surgery before (PRE) and after (POST) the induction of general anesthesia...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28245206/cerebrovascular-and-cardiovascular-variability-interactions-investigated-through-conditional-joint-transfer-entropy-in-subjects-prone-to-postural-syncope
#19
Vlasta Bari, Beatrice De Maria, Claudio Enrico Mazzucco, Gianluca Rossato, Davide Tonon, Giandomenico Nollo, Luca Faes, Alberto Porta
A model-based conditional transfer entropy approach was exploited to quantify the information transfer in cerebrovascular (CBV) and cardiovascular (CV) systems in subjects prone to develop postural syncope. Spontaneous beat-to-beat variations of mean cerebral blood flow velocity (MCBFV) derived from a transcranial Doppler device, heart period (HP) derived from surface electrocardiogram, mean arterial pressure (MAP) and systolic arterial pressure (SAP) derived from finger plethysmographic arterial pressure device were monitored at rest in supine position (REST) and during 60° head-up tilt (TILT) in 13 individuals (age mean±standard deviation: 28±9 years, min-max range: 18-44 years, 5 males) with a history of recurrent episodes of syncope (SYNC) and in 13 age- and gender-matched controls (NonSYNC)...
February 28, 2017: Physiological Measurement
https://www.readbyqxmd.com/read/28241380/causality-transfer-entropy-and-allosteric-communication-landscapes-in-proteins-with-harmonic-interactions
#20
Aysima Hacisuleyman, Burak Erman
A fast and approximate method of generating allosteric communication landscapes in proteins is presented by using Schreiber's entropy transfer concept in combination with the Gaussian Network Model of proteins. Predictions of the model and the allosteric communication landscapes generated show that information transfer in proteins does not necessarily take place along a single path, but an ensemble of pathways is possible. The model emphasizes that knowledge of entropy only is not sufficient for determining allosteric communication and additional information based on time delayed correlations should be introduced, which leads to the presence of causality in proteins...
February 27, 2017: Proteins
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